Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0570100 |
| Transcript ID | LotjaGi1g1v0570100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyol transporter; TAIR: AT3G18830.1 polyol/monosaccharide transporter 5; Swiss-Prot: sp|Q8VZ80|PLT5_ARATH Polyol transporter 5; TrEMBL-Plants: tr|G7J6H8|G7J6H8_MEDTR Polyol/monosaccharide transporter 1; Found in the gene: LotjaGi1g1v0570100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110309961..110311884) extracted from Lotus japonicus Gifu genome v1.2.
ATCACATTCATAAATGTACACCATAACAGTAACAACCCTCATATACAACATTTTTTTTTCTATCTTATTTTTCAAATCAC ATCACATCCATATTATATTTATCACTTATCTCTCTGTTCACAAACACGAAACATTTTAGAACTATTATATAGAATATCAC CATTTCAGTGCAATATAGCATGCATTGTTCTAAACCATCAACAACCTCCACTCTCTGTTGTGTTGCACAGTGGATGCTGT TATGTAATACACTATATAAAAACTGAGTGGCACAGTGGATGCTGTTATGTTGCAGATATTGGAGTGATGAGCGGAGCAGT GATATACATAAAACGAGACCTCAAATTATCAGACGTGCAAATCGAAATCCTCGTCGGCATCATCAACCTCCACTCTCTGG TAGGCTCATGCCTCGCCGGCAGAACCTCCGACTGGATCGGACGCCGTTACACAATCGTCCTCGCTGGAGGCATCTTCTTC ACCGGCGCCCTCCTCATGGGATTCTCCCCCAACTACTCTTTCCTAATGTTCGCACGCTTCATAGCCGGCATCGGCATTGG CTACGCCCTCATGATCGCCCCCGTTTACACCGCCGAAGTCTCCCCCGCTTCCTCTCGTGGCTTCCTCACCTCCTTCCCCG AAGTAACTAACTAACTAACTAACTCCTCCACCTACATTTTGTTGGTACCCGAACACGCAGCGAAAAGTTAGAGCACAAAA ACTCCTCTTACTTGTGAGAACAGTGCTCATAACTTTCCGCGCTGCATGCTCTGGTACCAACACATTCATCGATTAATTAA CCAAATTAATTCTAATTATCAGCTAATCACCCTTAATTATGCAGGTTTTCATCAATGGAGGGATCTTACTTGGATACATT TCAAACTACGGATTTTCAAAGCTTTCACTAAGCTTAGGATGGAGGTTGATGCTCGGAATCGGGGCGGTTCCGTCGGTGAT TCTGGCAGTCGGAGTTTTAGCCATGCCGGAGTCACCTCGCTGGCTCGTAATGAAGGGGAGGCTTGGAGAAGCAACGAAAG TCCTCAACAGAACCTCCGATTCAAAGGAAGAAGCTCAGCTCAGGCTCGCCGAAATCAAAGCCGCCGCCGGAATCCCCGAA TCCTGCACCGACGACGTTGTTCACATCACCAAGAACAGCCACGGCGGCGGTGGCAGCGGCGGCGAAGTGTGGAAGGAGCT GTTCCTTCATCCAACACCGGCGGTGCGTCACATCCTCATCGCGGCTCTCGGGATCCACTTCTTCCAGCAAGCATCGGGAA TCGACGCCGTCGTTTTGTACAGTCCCACCATCTTCCGCAAGGCGGGGATCGAATCCGACACGGAGCAGCTCCTCGCCACC GTGGCCGTCGGATTCTGCAAGACGTTCTTCATCCTGGTGGCGACGTTTTTGCTGGACCGGGTCGGGCGTCGGCCGCTGCT GCTAACGAGCGTGGGCGGCATGGTGATCTCGCTTTTCACGCTCGCGGCGAGCCTAACCGTCATTGATCACGCAAACCACG GGAAGGTGATGTGGGCCGTTGGATTAAGCATCGCAACGGTTTTGTCCTACGTGGCAACTTTCTCCATTGGTGCGGGCCCC ATTGCGTGGGTGTATAGCTCGGAGATTTTCCCGTTGAGGCTGCGCGCTCAGGGTGCGGCGGTGGGAGTGGTGGTGAACAG AGTCACCAGTGGGGTGATCTCAATGACGTTTTTGTCCCTGTCAAATAAGATCACCATTGGTGGAGCTTTCTTCCTCTTCG GTGGAATCGCCACGTGTGGGTGGATCTTCTTCTATATCCTGCTCCCTGAAACACAGGGGAAGACCCTAGAGGAAATGGAA GGGTCTTTTGGTAAAATATTTGGAGTGAAATCCAGCGCCAAGAGTGTGGGAAATGATAATGGCGGGATTCAGTTAGCCAA TTAG
CDS sequence (LotjaGi1g1v0570100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGGAGCAGTGATATACATAAAACGAGACCTCAAATTATCAGACGTGCAAATCGAAATCCTCGTCGGCATCATCAA CCTCCACTCTCTGGTAGGCTCATGCCTCGCCGGCAGAACCTCCGACTGGATCGGACGCCGTTACACAATCGTCCTCGCTG GAGGCATCTTCTTCACCGGCGCCCTCCTCATGGGATTCTCCCCCAACTACTCTTTCCTAATGTTCGCACGCTTCATAGCC GGCATCGGCATTGGCTACGCCCTCATGATCGCCCCCGTTTACACCGCCGAAGTCTCCCCCGCTTCCTCTCGTGGCTTCCT CACCTCCTTCCCCGAAGTTTTCATCAATGGAGGGATCTTACTTGGATACATTTCAAACTACGGATTTTCAAAGCTTTCAC TAAGCTTAGGATGGAGGTTGATGCTCGGAATCGGGGCGGTTCCGTCGGTGATTCTGGCAGTCGGAGTTTTAGCCATGCCG GAGTCACCTCGCTGGCTCGTAATGAAGGGGAGGCTTGGAGAAGCAACGAAAGTCCTCAACAGAACCTCCGATTCAAAGGA AGAAGCTCAGCTCAGGCTCGCCGAAATCAAAGCCGCCGCCGGAATCCCCGAATCCTGCACCGACGACGTTGTTCACATCA CCAAGAACAGCCACGGCGGCGGTGGCAGCGGCGGCGAAGTGTGGAAGGAGCTGTTCCTTCATCCAACACCGGCGGTGCGT CACATCCTCATCGCGGCTCTCGGGATCCACTTCTTCCAGCAAGCATCGGGAATCGACGCCGTCGTTTTGTACAGTCCCAC CATCTTCCGCAAGGCGGGGATCGAATCCGACACGGAGCAGCTCCTCGCCACCGTGGCCGTCGGATTCTGCAAGACGTTCT TCATCCTGGTGGCGACGTTTTTGCTGGACCGGGTCGGGCGTCGGCCGCTGCTGCTAACGAGCGTGGGCGGCATGGTGATC TCGCTTTTCACGCTCGCGGCGAGCCTAACCGTCATTGATCACGCAAACCACGGGAAGGTGATGTGGGCCGTTGGATTAAG CATCGCAACGGTTTTGTCCTACGTGGCAACTTTCTCCATTGGTGCGGGCCCCATTGCGTGGGTGTATAGCTCGGAGATTT TCCCGTTGAGGCTGCGCGCTCAGGGTGCGGCGGTGGGAGTGGTGGTGAACAGAGTCACCAGTGGGGTGATCTCAATGACG TTTTTGTCCCTGTCAAATAAGATCACCATTGGTGGAGCTTTCTTCCTCTTCGGTGGAATCGCCACGTGTGGGTGGATCTT CTTCTATATCCTGCTCCCTGAAACACAGGGGAAGACCCTAGAGGAAATGGAAGGGTCTTTTGGTAAAATATTTGGAGTGA AATCCAGCGCCAAGAGTGTGGGAAATGATAATGGCGGGATTCAGTTAGCCAATTAG
Protein sequence (LotjaGi1g1v0570100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAVIYIKRDLKLSDVQIEILVGIINLHSLVGSCLAGRTSDWIGRRYTIVLAGGIFFTGALLMGFSPNYSFLMFARFIA GIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNYGFSKLSLSLGWRLMLGIGAVPSVILAVGVLAMP ESPRWLVMKGRLGEATKVLNRTSDSKEEAQLRLAEIKAAAGIPESCTDDVVHITKNSHGGGGSGGEVWKELFLHPTPAVR HILIAALGIHFFQQASGIDAVVLYSPTIFRKAGIESDTEQLLATVAVGFCKTFFILVATFLLDRVGRRPLLLTSVGGMVI SLFTLAASLTVIDHANHGKVMWAVGLSIATVLSYVATFSIGAGPIAWVYSSEIFPLRLRAQGAAVGVVVNRVTSGVISMT FLSLSNKITIGGAFFLFGGIATCGWIFFYILLPETQGKTLEEMEGSFGKIFGVKSSAKSVGNDNGGIQLAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| Gene3D | 1 | 450 | 450 | 4.6E-119 | – | |
| PANTHER | 1 | 467 | 467 | 7.7E-263 | – | |
| ProSiteProfiles | 1 | 436 | 436 | 45.853 | ||
| PANTHER | 1 | 467 | 467 | 7.7E-263 | – | |
| CDD | 1 | 443 | 443 | 0.0 | – | |
| SUPERFAMILY | 2 | 444 | 443 | 1.96E-62 | ||
| Pfam | 13 | 445 | 433 | 1.2E-101 | ||
| TIGRFAM | 14 | 443 | 430 | 1.6E-93 | ||
| Phobius | 17 | 36 | 20 | - | – | |
| TMHMM | 21 | 40 | 20 | - | – | |
| ProSitePatterns | 37 | 54 | 18 | - | ||
| Phobius | 37 | 47 | 11 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 48 | 66 | 19 | - | – | |
| Phobius | 67 | 71 | 5 | - | – | |
| Phobius | 72 | 94 | 23 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| PRINTS | 74 | 93 | 20 | 3.5E-17 | ||
| ProSitePatterns | 79 | 104 | 26 | - | ||
| Phobius | 95 | 105 | 11 | - | – | |
| Phobius | 106 | 124 | 19 | - | – | |
| TMHMM | 110 | 129 | 20 | - | – | |
| Phobius | 125 | 135 | 11 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 136 | 159 | 24 | - | – | |
| Phobius | 160 | 241 | 82 | - | – | |
| Coils | 179 | 199 | 21 | - | – | |
| Phobius | 242 | 269 | 28 | - | – | |
| PRINTS | 253 | 263 | 11 | 3.5E-17 | ||
| Phobius | 270 | 280 | 11 | - | – | |
| Phobius | 281 | 302 | 22 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 303 | 308 | 6 | - | – | |
| Phobius | 309 | 332 | 24 | - | – | |
| TMHMM | 310 | 332 | 23 | - | – | |
| Phobius | 333 | 343 | 11 | - | – | |
| Phobius | 344 | 370 | 27 | - | – | |
| TMHMM | 347 | 369 | 23 | - | – | |
| PRINTS | 348 | 369 | 22 | 3.5E-17 | ||
| Phobius | 371 | 381 | 11 | - | – | |
| PRINTS | 371 | 383 | 13 | 3.5E-17 | ||
| Phobius | 382 | 402 | 21 | - | – | |
| TMHMM | 382 | 404 | 23 | - | – | |
| Phobius | 403 | 407 | 5 | - | – | |
| Phobius | 408 | 432 | 25 | - | – | |
| TMHMM | 408 | 430 | 23 | - | – | |
| Phobius | 433 | 471 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0570100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…