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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0585000 |
| Transcript ID | LotjaGi1g1v0585000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT5G48850.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GXU5|SDI1_ARATH Protein SULFUR DEFICIENCY-INDUCED 1; TrEMBL-Plants: tr|I1KZB5|I1KZB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0585000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112437889..112440271) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGAAGTGTCAACAAACAGAGCTCAAAAGGGAAGAAAGAAGACCTATATCATGTTATTCATAAGGTTCCTTATGG AGATAGTCCTTATGTCAAAGCCAAGCACGCTCAGGTATATATGTCTATGCCTGCGTTTTCAATTTCAGCACACTTTGAAT TTGTTTGCTTTTTCAAGTTTGACTTAAACTGTGATTTGGTATCTGAAAGTGCTATTGAAATTGAATAGAATTTCACATCG ACTAAAGATATAAAGATATGACAGTCAGAATTGTCTTTATAAAAGATAGAGTAGTCTTTACTGCTAAACTAATTTTTGGG TTAAGTTAAGCTCAAATCATATATATCCTTATATTATCAAAATTGTGCTAATTGCACCATCTTCTTATTCTTCATCTCTT TTTCTCTCTTAATTTTATGTTTGGTTCAAATGAATGGTTTGAGTTGAGTGATGCAGTTTACAAAAGAATTGTATATAATT CACTATACTTTAAGTCTAGTTCTCAAATCTCTGACAGTTGAATTATTTTCTTTATAATAATGAATAATCATTGATACTAT TTTTTATTTTTATATTATTTTTGGAAATTAAATTAACAAATTAATAATGCATATATGAATTGATCAGTTGGTCGAGAAAG ACCCAGAAGCAGCTATAGTGTTGTTTTGGAAGGCAATTAATGCTGGAGACAAAGTAGATAGTGCCTTGAAAGACATGGCT GTTGTGATGAAGCAATTAGATAGAACTGAAGAAGCTATTGAAGCCATCAAATCTTTTAGAGGCCTCTGCTCCAAACACTC CCAAGAGTCTCTTGATAATGTGCTTCTTGATCTTTATAAGGTAGGAGTATATTACAAGTGTCTTTTAAACAACTTCAAAA ATCAAAAGGATGCTCCATCATGTACATATATATGATCTTATTTTGATTCTATTCATTACTTAATTATTATTGTATCATTG CTGTCAAAAGTTAGAAAGAGTGCCGAAATGGGTTGGCACACCTAGCCCTTAGAACCCAAATTTCAGCGATTATCTCTCAA GAGTGTGCAAATCCATATTCATGAAGATCTCATTGCAGCATGTCACTAGAGTGGCCTTGTGCCAGCCCCCACAAGGGTAA TACTTTACCCGTTGGAGATCCTGAGTATGTCATTGATACTCTGTCTAGTATAGGTATAGAGGTGACTCCATTTGTATTAA AAAAAAAGTTAGAATGGGGAGTATTTTTTATTAGATTTAGTTAATTAAACAGTTATATGATCAATCTAATTTAGTATTCC GGAAAAATTCACAGAAATGTGGAAGAGTGGAAGAGCAAATTGAATTATTAAAACGAAAGCTAAGATTAATCTACCAAGGT GAGGCCTTTAATGGAAGGACCACAAAAACTGCTCGATCTCATGGCAAGAAGTTCCAAGTTTCCATCAAGCAAGAAACTGC ACGATTATTGGTACTTAAACCTTTTACTTTGTTTACATCGTTCTCAACACCTTTTCTTTTCTATTCTTTTCAATCTTAAT TTTATTGAAACTTCAACAATAATTAAAACATGCCGTGAAACATTCAATCAGAGTTCATTGTGCATGTTTGAATACAAAAT GAAAAAATCACAATGGACAACTTTAAAAGTTAACAATCATTATTATTGTTTATTGTAACTGACTCATTTTAATTTTCCAC TTATATCTAATCATGCACTTATATATGCATGTGAATTTCCTTCAAAATAAAAGAGATATCTAATAGAGTTTTTTATTGTT AATATTCCACCAACTTATGTTTAGATACCTGTTAACTTTAGTGCTAATGAGTAGGTAAAAGTTAACAGAACTCTTCTTAT AAACTAGAATTAGGATGATGGCGTTAATTGTTAACATAGCAAACACACATTTTATTCACAATGGAATTCAGATTTTAGTT TTATTTTTTTCCTTTTTGAAAATTCATAATTTTAGTATATTGATTAATTAAAGATGTGCAGGGAAACTTGGGCTGGGCCT ACATGCAAAAATCAAACTACATGATGGCTGAGGTGGTGCTGAAAAAGGCTCAAATGATAGACACAGACGCCAATAAGGCT TGCAACCTGGGCTTATGCCTTATGAGACAACATCGTTATGAGGAAGCTTATTTCATTCTTGAACAAGTATTGCAATGCAA GGTTCCAGGTTCAGATGAAATGAAGTCCAGAAATAGAGCTGAAGAATTGGTGGCAGAATTGAATGCTAACCTTCCCCAAC CTGAGTTCTTGGATGCTTTGGGCCTTGATGATGACTTGGTCAAAGGGATTGATGATTTGTTAAATGCATGGGGCACCAAT AGAGCAAGAAGGCTTCCCATCTTTGAGGAAATCTCTTCTTTTAGAGATCAACTAGCTTGTTAA
CDS sequence (LotjaGi1g1v0585000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAAGTGTCAACAAACAGAGCTCAAAAGGGAAGAAAGAAGACCTATATCATGTTATTCATAAGGTTCCTTATGG AGATAGTCCTTATGTCAAAGCCAAGCACGCTCAGTTGGTCGAGAAAGACCCAGAAGCAGCTATAGTGTTGTTTTGGAAGG CAATTAATGCTGGAGACAAAGTAGATAGTGCCTTGAAAGACATGGCTGTTGTGATGAAGCAATTAGATAGAACTGAAGAA GCTATTGAAGCCATCAAATCTTTTAGAGGCCTCTGCTCCAAACACTCCCAAGAGTCTCTTGATAATGTGCTTCTTGATCT TTATAAGAAATGTGGAAGAGTGGAAGAGCAAATTGAATTATTAAAACGAAAGCTAAGATTAATCTACCAAGGTGAGGCCT TTAATGGAAGGACCACAAAAACTGCTCGATCTCATGGCAAGAAGTTCCAAGTTTCCATCAAGCAAGAAACTGCACGATTA TTGGGAAACTTGGGCTGGGCCTACATGCAAAAATCAAACTACATGATGGCTGAGGTGGTGCTGAAAAAGGCTCAAATGAT AGACACAGACGCCAATAAGGCTTGCAACCTGGGCTTATGCCTTATGAGACAACATCGTTATGAGGAAGCTTATTTCATTC TTGAACAAGTATTGCAATGCAAGGTTCCAGGTTCAGATGAAATGAAGTCCAGAAATAGAGCTGAAGAATTGGTGGCAGAA TTGAATGCTAACCTTCCCCAACCTGAGTTCTTGGATGCTTTGGGCCTTGATGATGACTTGGTCAAAGGGATTGATGATTT GTTAAATGCATGGGGCACCAATAGAGCAAGAAGGCTTCCCATCTTTGAGGAAATCTCTTCTTTTAGAGATCAACTAGCTT GTTAA
Protein sequence (LotjaGi1g1v0585000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSVNKQSSKGKKEDLYHVIHKVPYGDSPYVKAKHAQLVEKDPEAAIVLFWKAINAGDKVDSALKDMAVVMKQLDRTEE AIEAIKSFRGLCSKHSQESLDNVLLDLYKKCGRVEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVSIKQETARL LGNLGWAYMQKSNYMMAEVVLKKAQMIDTDANKACNLGLCLMRQHRYEEAYFILEQVLQCKVPGSDEMKSRNRAEELVAE LNANLPQPEFLDALGLDDDLVKGIDDLLNAWGTNRARRLPIFEEISSFRDQLAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 294 | 289 | 3.1E-190 | – | |
| PANTHER | 6 | 294 | 289 | 3.1E-190 | – | |
| Gene3D | 6 | 128 | 123 | 2.1E-6 | ||
| SUPERFAMILY | 39 | 220 | 182 | 6.83E-12 | ||
| Coils | 104 | 124 | 21 | - | – | |
| Gene3D | 132 | 245 | 114 | 7.2E-11 | ||
| Pfam | 158 | 188 | 31 | 0.08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0585000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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