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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011990
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1969 results. Now displaying 1 of 40 with 50 rows per page. This search has taken 5.891s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000719.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 312103 314781 +
2 domain predictions
1 GO term
Lj0g3v0002149.1
n.a. n.a. chr0 681944 688099 -
2 domain predictions
1 GO term
Lj0g3v0005979.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] gi|356519887|ref|XP_003528600.1| chr0 2253785 2256561 +
3 domain predictions
1 GO term
Lj0g3v0015519.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357487221|ref|XP_003613898.1| chr0 6048263 6049099 +
2 domain predictions
1 GO term
Lj0g3v0015749.1
n.a. binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297819316|ref|XP_002877541.1| chr0 6127509 6129344 +
3 domain predictions
1 GO term
Lj0g3v0019219.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 7603327 7605574 +
2 domain predictions
1 GO term
Lj0g3v0020909.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] gi|356523586|ref|XP_003530418.1| chr0 8414081 8416209 -
2 domain predictions
1 GO term
Lj0g3v0022159.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Glycine max] gi|356577724|ref|XP_003556973.1| chr0 8957448 8959485 -
3 domain predictions
1 GO term
Lj0g3v0023469.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g14470-like [Glycine max] gi|356498922|ref|XP_003518295.1| chr0 9368133 9373652 +
2 domain predictions
1 GO term
Lj0g3v0040249.1
n.a. Alpha-soluble NSF attachment protein [Medicago truncatula] gi|357461465|ref|XP_003601014.1| chr0 13047875 13052552 +
3 domain predictions
1 GO term
Lj0g3v0040249.2
n.a. Alpha-soluble NSF attachment protein [Medicago truncatula] gi|357461465|ref|XP_003601014.1| chr0 13048048 13052552 +
3 domain predictions
1 GO term
Lj0g3v0047089.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| chr0 15709276 15711861 -
2 domain predictions
1 GO term
Lj0g3v0048379.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 16286813 16288438 +
3 domain predictions
1 GO term
Lj0g3v0048509.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| chr0 16331390 16340624 +
3 domain predictions
1 GO term
Lj0g3v0048609.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Fragaria vesca subsp]. vesca] gi|470113906|ref|XP_004293160.1| chr0 16406487 16410053 +
2 domain predictions
1 GO term
Lj0g3v0054639.1
n.a. Alpha-soluble NSF attachment protein [Medicago truncatula] gi|357492899|ref|XP_003616738.1| chr0 17550728 17554719 +
3 domain predictions
1 GO term
Lj0g3v0056049.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like isoform X1 [Cicer arietinum] gi|502165572|ref|XP_004513623.1| chr0 18190422 18194425 +
2 domain predictions
1 GO term
Lj0g3v0057569.1
n.a. PREDICTED: F-box protein At1g67340-like [Glycine max] gi|356525160|ref|XP_003531195.1| chr0 18890823 18891709 -
2 domain predictions
1 GO term
Lj0g3v0058699.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Glycine max] gi|356569756|ref|XP_003553062.1| chr0 19316312 19319713 +
2 domain predictions
1 GO term
Lj0g3v0059929.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532365|ref|XP_003534744.1| chr0 19910883 19913101 +
3 domain predictions
1 GO term
Lj0g3v0059939.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19914329 19916280 +
2 domain predictions
1 GO term
Lj0g3v0059959.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19917774 19920509 +
3 domain predictions
1 GO term
Lj0g3v0065959.2
n.a. Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508708726|gb|EOY00623.1| chr0 23064132 23069081 -
3 domain predictions
1 GO term
Lj0g3v0067129.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Glycine max] gi|356508382|ref|XP_003522936.1| chr0 23760356 23763066 +
2 domain predictions
1 GO term
Lj0g3v0069469.1
n.a. PREDICTED: tetratricopeptide repeat protein 33-like [Cicer arietinum] gi|502124029|ref|XP_004498353.1| chr0 25119143 25122855 -
3 domain predictions
1 GO term
Lj0g3v0070249.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Cicer arietinum] gi|502078188|ref|XP_004485865.1| chr0 25582162 25585824 +
2 domain predictions
1 GO term
Lj0g3v0071309.1
n.a. PREDICTED: tetratricopeptide repeat protein 4 homolog [Glycine max] gi|356545912|ref|XP_003541377.1| chr0 26106771 26112108 +
3 domain predictions
1 GO term
Lj0g3v0071389.1
n.a. pentatricopeptide (PPR) repeat-containing protein [Cucumis melo subsp]. melo] gi|307136045|gb|ADN33897.1| chr0 26168404 26169740 +
2 domain predictions
1 GO term
Lj0g3v0072739.1
n.a. PREDICTED: mitochondrial import receptor subunit TOM20-like [Cicer arietinum] gi|502091745|ref|XP_004489624.1| chr0 27096379 27097666 +
3 domain predictions
1 GO term
Lj0g3v0072739.2
n.a. PREDICTED: mitochondrial import receptor subunit TOM20-like [Cicer arietinum] gi|502091745|ref|XP_004489624.1| chr0 27096379 27102020 +
3 domain predictions
1 GO term
Lj0g3v0072739.3
n.a. PREDICTED: mitochondrial import receptor subunit TOM20-like [Cicer arietinum] gi|502091745|ref|XP_004489624.1| chr0 27096379 27102020 +
3 domain predictions
1 GO term
Lj0g3v0075399.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| chr0 28602106 28602550 +
2 domain predictions
1 GO term
Lj0g3v0076569.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cicer arietinum] gi|502096635|ref|XP_004490797.1| chr0 29218756 29228567 -
2 domain predictions
1 GO term
Lj0g3v0076569.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cicer arietinum] gi|502096635|ref|XP_004490797.1| chr0 29225527 29228567 -
2 domain predictions
1 GO term
Lj0g3v0078539.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like isoform X1 [Cicer arietinum] gi|502153966|ref|XP_004509525.1| chr0 30232657 30234882 +
2 domain predictions
1 GO term
Lj0g3v0078579.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max] gi|356540339|ref|XP_003538647.1| chr0 30265408 30267641 -
3 domain predictions
1 GO term
Lj0g3v0079039.1
n.a. 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao] gi|508709931|gb|EOY01828.1| chr0 30486903 30489419 +
3 domain predictions
1 GO term
Lj0g3v0079559.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 30771688 30776777 +
3 domain predictions
1 GO term
Lj0g3v0082099.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Glycine max] gi|356516061|ref|XP_003526715.1| chr0 32190736 32192974 +
2 domain predictions
1 GO term
Lj0g3v0084729.1
n.a. PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like isoform 1 [Glycine max] gi|356549136|ref|XP_003542953.1| chr0 33772350 33779773 +
3 domain predictions
1 GO term
Lj0g3v0084789.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g49740-like [Cicer arietinum] gi|502165633|ref|XP_004513641.1| chr0 33825648 33828377 +
2 domain predictions
1 GO term
Lj0g3v0087729.1
n.a. PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Glycine max] gi|356558963|ref|XP_003547771.1| chr0 35709696 35710276 +
4 domain predictions
1 GO term
Lj0g3v0088099.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 35933615 35935806 -
2 domain predictions
1 GO term
Lj0g3v0089599.1
n.a. PREDICTED: ethylene-overproduction protein 1-like [Glycine max] gi|356541801|ref|XP_003539361.1| chr0 36791674 36793456 -
3 domain predictions
1 GO term
Lj0g3v0089599.2
n.a. PREDICTED: ethylene-overproduction protein 1-like [Glycine max] gi|356566016|ref|XP_003551231.1| chr0 36791674 36796392 -
2 domain predictions
1 GO term
Lj0g3v0089839.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357468161|ref|XP_003604365.1| chr0 36933734 36936494 -
3 domain predictions
1 GO term
Lj0g3v0090229.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Glycine max] gi|356510940|ref|XP_003524191.1| chr0 37116461 37119826 -
2 domain predictions
1 GO term
Lj0g3v0091679.1
n.a. PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Glycine max] gi|356504332|ref|XP_003520950.1| chr0 37995719 38008484 +
3 domain predictions
1 GO term
Lj0g3v0094889.1
n.a. PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like [Glycine max] gi|356512940|ref|XP_003525172.1| chr0 39929297 39932963 -
3 domain predictions
1 GO term
Lj0g3v0096099.1
n.a. PREDICTED: anaphase-promoting complex subunit 6-like [Cicer arietinum] gi|502169527|ref|XP_004514627.1| chr0 40478236 40487538 -
3 domain predictions
1 GO term