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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF48452
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 999 results. Now displaying 1 of 20 with 50 rows per page. This search has taken 0.158s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0005979.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] gi|356519887|ref|XP_003528600.1| chr0 2253785 2256561 +
2 domain predictions
1 GO term
Lj0g3v0015749.1
n.a. binding protein [Arabidopsis lyrata subsp]. lyrata] gi|297819316|ref|XP_002877541.1| chr0 6127509 6129344 +
2 domain predictions
1 GO term
Lj0g3v0022159.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Glycine max] gi|356577724|ref|XP_003556973.1| chr0 8957448 8959485 -
2 domain predictions
1 GO term
Lj0g3v0040249.1
n.a. Alpha-soluble NSF attachment protein [Medicago truncatula] gi|357461465|ref|XP_003601014.1| chr0 13047875 13052552 +
2 domain predictions
1 GO term
Lj0g3v0040249.2
n.a. Alpha-soluble NSF attachment protein [Medicago truncatula] gi|357461465|ref|XP_003601014.1| chr0 13048048 13052552 +
2 domain predictions
1 GO term
Lj0g3v0048379.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| chr0 16286813 16288438 +
2 domain predictions
1 GO term
Lj0g3v0048509.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502217|ref|XP_003621397.1| chr0 16331390 16340624 +
2 domain predictions
1 GO term
Lj0g3v0054639.1
n.a. Alpha-soluble NSF attachment protein [Medicago truncatula] gi|357492899|ref|XP_003616738.1| chr0 17550728 17554719 +
2 domain predictions
1 GO term
Lj0g3v0059929.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532365|ref|XP_003534744.1| chr0 19910883 19913101 +
2 domain predictions
1 GO term
Lj0g3v0059959.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19917774 19920509 +
2 domain predictions
1 GO term
Lj0g3v0065959.2
n.a. Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508708726|gb|EOY00623.1| chr0 23064132 23069081 -
2 domain predictions
1 GO term
Lj0g3v0069469.1
n.a. PREDICTED: tetratricopeptide repeat protein 33-like [Cicer arietinum] gi|502124029|ref|XP_004498353.1| chr0 25119143 25122855 -
2 domain predictions
1 GO term
Lj0g3v0071309.1
n.a. PREDICTED: tetratricopeptide repeat protein 4 homolog [Glycine max] gi|356545912|ref|XP_003541377.1| chr0 26106771 26112108 +
2 domain predictions
1 GO term
Lj0g3v0072739.1
n.a. PREDICTED: mitochondrial import receptor subunit TOM20-like [Cicer arietinum] gi|502091745|ref|XP_004489624.1| chr0 27096379 27097666 +
2 domain predictions
1 GO term
Lj0g3v0072739.2
n.a. PREDICTED: mitochondrial import receptor subunit TOM20-like [Cicer arietinum] gi|502091745|ref|XP_004489624.1| chr0 27096379 27102020 +
2 domain predictions
1 GO term
Lj0g3v0072739.3
n.a. PREDICTED: mitochondrial import receptor subunit TOM20-like [Cicer arietinum] gi|502091745|ref|XP_004489624.1| chr0 27096379 27102020 +
2 domain predictions
1 GO term
Lj0g3v0078579.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max] gi|356540339|ref|XP_003538647.1| chr0 30265408 30267641 -
2 domain predictions
1 GO term
Lj0g3v0079039.1
n.a. 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao] gi|508709931|gb|EOY01828.1| chr0 30486903 30489419 +
2 domain predictions
1 GO term
Lj0g3v0079559.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 30771688 30776777 +
2 domain predictions
1 GO term
Lj0g3v0084729.1
n.a. PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like isoform 1 [Glycine max] gi|356549136|ref|XP_003542953.1| chr0 33772350 33779773 +
2 domain predictions
1 GO term
Lj0g3v0087729.1
n.a. PREDICTED: E3 ubiquitin-protein ligase CHIP-like [Glycine max] gi|356558963|ref|XP_003547771.1| chr0 35709696 35710276 +
2 domain predictions
1 GO term
Lj0g3v0089599.1
n.a. PREDICTED: ethylene-overproduction protein 1-like [Glycine max] gi|356541801|ref|XP_003539361.1| chr0 36791674 36793456 -
2 domain predictions
1 GO term
Lj0g3v0089839.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357468161|ref|XP_003604365.1| chr0 36933734 36936494 -
2 domain predictions
1 GO term
Lj0g3v0091679.1
n.a. PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Glycine max] gi|356504332|ref|XP_003520950.1| chr0 37995719 38008484 +
2 domain predictions
1 GO term
Lj0g3v0094889.1
n.a. PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like [Glycine max] gi|356512940|ref|XP_003525172.1| chr0 39929297 39932963 -
2 domain predictions
1 GO term
Lj0g3v0096099.1
n.a. PREDICTED: anaphase-promoting complex subunit 6-like [Cicer arietinum] gi|502169527|ref|XP_004514627.1| chr0 40478236 40487538 -
2 domain predictions
1 GO term
Lj0g3v0101829.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] gi|356540844|ref|XP_003538894.1| chr0 43238167 43241619 -
2 domain predictions
1 GO term
Lj0g3v0103599.1
n.a. n.a. chr0 44176646 44180628 +
2 domain predictions
1 GO term
Lj0g3v0105529.1
n.a. PREDICTED: protein SGT1 homolog B-like [Glycine max] gi|356559728|ref|XP_003548149.1| chr0 45284779 45289521 +
2 domain predictions
1 GO term
Lj0g3v0107959.1
n.a. PREDICTED: probable serine/threonine-protein kinase At4g35230-like [Glycine max] gi|356511538|ref|XP_003524482.1| chr0 46596198 46602084 -
2 domain predictions
1 GO term
Lj0g3v0109429.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Cicer arietinum] gi|502104041|ref|XP_004492420.1| chr0 47392331 47394515 -
2 domain predictions
1 GO term
Lj0g3v0109449.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Cicer arietinum] gi|502104041|ref|XP_004492420.1| chr0 47397077 47401012 -
2 domain predictions
1 GO term
Lj0g3v0111659.1
n.a. Lupus brain antigen 1-like protein [Aegilops tauschii] gi|475599628|gb|EMT24290.1| chr0 48516215 48521869 +
2 domain predictions
1 GO term
Lj0g3v0112789.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357480561|ref|XP_003610566.1| chr0 49220312 49223359 +
2 domain predictions
1 GO term
Lj0g3v0114629.1
n.a. PREDICTED: clustered mitochondria protein-like isoform X1 [Cicer arietinum] gi|502170858|ref|XP_004514933.1| chr0 50267301 50282465 +
2 domain predictions
1 GO term
Lj0g3v0117999.1
n.a. Kinesin light chain [Medicago truncatula] gi|357461993|ref|XP_003601278.1| chr0 52145145 52146634 +
2 domain predictions
1 GO term
Lj0g3v0118009.1
n.a. Kinesin light chain [Medicago truncatula] gi|357461993|ref|XP_003601278.1| chr0 52146581 52148402 +
2 domain predictions
1 GO term
Lj0g3v0119429.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cicer arietinum] gi|502176643|ref|XP_004515908.1| chr0 52863102 52865149 +
2 domain predictions
1 GO term
Lj0g3v0121109.1
n.a. PREDICTED: cell division cycle protein 27 homolog B-like, partial [Cucumis sativus] gi|449518364|ref|XP_004166212.1| chr0 53951300 53952775 -
2 domain predictions
1 GO term
Lj0g3v0121319.1
n.a. PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like [Cicer arietinum] gi|502091797|ref|XP_004489637.1| chr0 54115469 54120441 -
2 domain predictions
1 GO term
Lj0g3v0134189.1
n.a. Small glutamine-rich tetratricopeptide repeat-containing protein [Medicago truncatula] gi|357489549|ref|XP_003615062.1| chr0 61446624 61450396 -
2 domain predictions
1 GO term
Lj0g3v0162819.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cicer arietinum] gi|502140202|ref|XP_004504106.1| chr0 76866303 76869162 +
2 domain predictions
1 GO term
Lj0g3v0167769.1
n.a. Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508698909|gb|EOX90805.1| chr0 79865918 79868056 -
2 domain predictions
1 GO term
Lj0g3v0169649.1
n.a. PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Cicer arietinum] gi|502123470|ref|XP_004498123.1| chr0 80999973 81003313 +
2 domain predictions
1 GO term
Lj0g3v0169899.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi|356544498|ref|XP_003540687.1| chr0 81246788 81247432 -
2 domain predictions
1 GO term
Lj0g3v0173949.1
n.a. PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like [Cicer arietinum] gi|502091797|ref|XP_004489637.1| chr0 83817980 83822881 -
2 domain predictions
1 GO term
Lj0g3v0174949.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357455473|ref|XP_003598017.1| chr0 84438641 84440032 -
2 domain predictions
1 GO term
Lj0g3v0175019.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein [Theobroma cacao] gi|508783988|gb|EOY31244.1| chr0 84473202 84476019 +
2 domain predictions
1 GO term
Lj0g3v0179289.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 87021075 87022871 +
2 domain predictions
1 GO term
Lj0g3v0197889.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like [Cicer arietinum] gi|502123856|ref|XP_004498286.1| chr0 96420388 96420928 +
2 domain predictions
1 GO term