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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0595700 |
| Transcript ID | LotjaGi1g1v0595700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly(A)-specific ribonuclease PARN-like; TAIR: AT3G25430.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8W4C3|PARNL_ARATH Poly(A)-specific ribonuclease PARN-like; TrEMBL-Plants: tr|A0A151SIG1|A0A151SIG1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0595700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113537953..113540079) extracted from Lotus japonicus Gifu genome v1.2.
GGCATATCATATCTATCCAGAGCACAAGAGTCATTAGCTAAAATTCGTATTGGGACTGCTTCTCCTTCTCATAATGTAAT GAAATCATCTTCGCCCCCTACTGTTGCTGATAAAATATTTGTTGAGAGGATTAGATCACGGATTAGACATTGGAGAAAGA CATGTAAAAGCTCGGGCACAAACTCAAGCAAAGATGGTATGAAAATCTTTAGCAAACTCTTTGTGCAATTAGGTTTTTCT TAGGTCTTTCTGTTGTTACTAAATTCTCATTTTTGTGTAGAAGAACTTATCAACTCTCTTAGGAGTATTGTCCTGGGTAG TGAACAGTTCAGATCAAGACCTTCCTTGACTATAGATGTTTGTAGTGAACGTCAAGCGCAGCTAATTTTGGAGGTAATGC ACCAATTAACTCTTAAATTGTTCTGATTTGAATGTGACAACCTTGATGGCCTCACTGTTGGTGTAACTGAATGAATCTTT TTCCTTTCTTTTATTGTTCTCTGGTTTGTCTGTTTGTAGATGTTGGTAGACTTCGCAGATGACCTTCTTCCTTTGCCAGT CCCTGCAAAGAGTGGGAGTGGGACCACCCAGGCAGTACGTATTGTTTTGGCAAATTCAAAAGAAGACAAGGATTTGTTGG AGGTAATGAGAGACTATCGCTTTTTGCTTGTTCCTCTTAGGGATTTTCTTTGGAAATGATTGTGGTTTTGTGCTGCAGAA AGAGCTTCAAAGTTTTGAAGAGGAGGAGAACAAGAAAATTCGTGGATTTCGAGAGGTGATCGATTTGATCTCTGCTTCAC AGAAACCTGTTATCTCCCACAATTCCCTTAATGGTGTATCTCTTAAATGGAAATTTCTCAACTTGTTTAAGCATATTGAT TTGGTCTACTTTCCTCAGTATATTAACTTTTTGATGGTTTATGCAGATTGTACACTTGTTCATTCAAAATTCATTGCACC CCTTCCACCACAAGTAGATGAGTTCATTAGCTCCTTGTGCACGGCTTTCCCCAAAGTGCTTGACCTGAATTATTTGATGA AGAAAATTGGATCCACGAGAAAACTCAGTGGCATACCTAGTGCTATATCCTACTTGAATAATAATTTCTATGCACCTGTA GATTTGGAAATTCCTGACCGAGGTCAGTCACTGTTAAGTCCCCAACATTTTAGTTTCACATCCAAATTACAAAAGCATGC TTATTACATGATTTGAGCCATTTTATCATGATAGTTTTGTGGAAAGCTTCATGATTAGTCCTTGTACTTCTTGCATTCTT AGCTTTACAACATGCAGAGTTTGTTTGTATTCCTTTTATACTTGAAACAAAATACTGGAAGGCTGGTTTTAATTTCATGA CTGGTAGCTTAGTCTTCTTTTTATTTCATTTCTGGTTTATACAGATACAGTAAACAAAGGCAGGATTCATGGACTTAATG CATTGAGGCTATGCTATTTATTTATGAAGCTCTGCTCTATACTGAAAATTTCTCCAATTGTTACGGAATATGGCAAGAAG CACTTGGCCCCTGAGCTTGAAAACGCTACCAACGTCTTCCATCCATGCTCAACAAGTATCCAAGAATCATGTAATGGGGA TATTAATGTGTGGACCCATAATACAAGGAAAGTCAGTTGTGAAAATGTGGTTTTCTTGTGGGGATTTAAATTTGGCACGA CAGCTGGAATGCTGAAGAACGTACTTCGTTCATCCCACGATATCTTTTCAGGAGAGTTTGATGTTAAATTGGTGGATAAG AGTTGTGCCATTGTTGTTTTCTGGCAGCAAGGGTTATCAAAAGATTTTCTAGATGTAATGAATAGTGAAGAAATTAGTGG AGACTTAAAGGAGTTAGTGTCAGATGGTGTGAGGGTAACTTGCTATGATACCTACAAGACAATGTGTAGGCTAGGTTTGT GGGAGATGGATCTTGCAGAGTCCTTAGAAAGAGCCTTGGAAAGTTCTCGCTATGATACAAAGATTAATGGTGAAAGACAT TCTTCTGAGATTCATTGGTATAATGACAATGTAATTAACTTCGATGATCTTTAAAGCTGTCTTTGAGCTATTTATATTTC TATCAATATCTTTCACTGATTGCAAGGAAACATGACTTTTTATGGGA
CDS sequence (LotjaGi1g1v0595700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCATCTTCGCCCCCTACTGTTGCTGATAAAATATTTGTTGAGAGGATTAGATCACGGATTAGACATTGGAGAAA GACATGTAAAAGCTCGGGCACAAACTCAAGCAAAGATGAACTTATCAACTCTCTTAGGAGTATTGTCCTGGGTAGTGAAC AGTTCAGATCAAGACCTTCCTTGACTATAGATGTTTGTAGTGAACGTCAAGCGCAGCTAATTTTGGAGATGTTGGTAGAC TTCGCAGATGACCTTCTTCCTTTGCCAGTCCCTGCAAAGAGTGGGAGTGGGACCACCCAGGCAGTACGTATTGTTTTGGC AAATTCAAAAGAAGACAAGGATTTGTTGGAGAAAGAGCTTCAAAGTTTTGAAGAGGAGGAGAACAAGAAAATTCGTGGAT TTCGAGAGGTGATCGATTTGATCTCTGCTTCACAGAAACCTGTTATCTCCCACAATTCCCTTAATGGTGTATCTCTTAAA TGGAAATTTCTCAACTTGTTTAAGCATATTGATTTGGTCTACTTTCCTCAGTATATTAACTTTTTGATGGTTTATGCAGA TTGTACACTTGTTCATTCAAAATTCATTGCACCCCTTCCACCACAAGTAGATGAGTTCATTAGCTCCTTGTGCACGGCTT TCCCCAAAGTGCTTGACCTGAATTATTTGATGAAGAAAATTGGATCCACGAGAAAACTCAGTGGCATACCTAGTGCTATA TCCTACTTGAATAATAATTTCTATGCACCTGTAGATTTGGAAATTCCTGACCGAGATACAGTAAACAAAGGCAGGATTCA TGGACTTAATGCATTGAGGCTATGCTATTTATTTATGAAGCTCTGCTCTATACTGAAAATTTCTCCAATTGTTACGGAAT ATGGCAAGAAGCACTTGGCCCCTGAGCTTGAAAACGCTACCAACGTCTTCCATCCATGCTCAACAAGTATCCAAGAATCA TGTAATGGGGATATTAATGTGTGGACCCATAATACAAGGAAAGTCAGTTGTGAAAATGTGGTTTTCTTGTGGGGATTTAA ATTTGGCACGACAGCTGGAATGCTGAAGAACGTACTTCGTTCATCCCACGATATCTTTTCAGGAGAGTTTGATGTTAAAT TGGTGGATAAGAGTTGTGCCATTGTTGTTTTCTGGCAGCAAGGGTTATCAAAAGATTTTCTAGATGTAATGAATAGTGAA GAAATTAGTGGAGACTTAAAGGAGTTAGTGTCAGATGGTGTGAGGGTAACTTGCTATGATACCTACAAGACAATGTGTAG GCTAGGTTTGTGGGAGATGGATCTTGCAGAGTCCTTAGAAAGAGCCTTGGAAAGTTCTCGCTATGATACAAAGATTAATG GTGAAAGACATTCTTCTGAGATTCATTGGTATAATGACAATGTAATTAACTTCGATGATCTTTAA
Protein sequence (LotjaGi1g1v0595700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSSSPPTVADKIFVERIRSRIRHWRKTCKSSGTNSSKDELINSLRSIVLGSEQFRSRPSLTIDVCSERQAQLILEMLVD FADDLLPLPVPAKSGSGTTQAVRIVLANSKEDKDLLEKELQSFEEEENKKIRGFREVIDLISASQKPVISHNSLNGVSLK WKFLNLFKHIDLVYFPQYINFLMVYADCTLVHSKFIAPLPPQVDEFISSLCTAFPKVLDLNYLMKKIGSTRKLSGIPSAI SYLNNNFYAPVDLEIPDRDTVNKGRIHGLNALRLCYLFMKLCSILKISPIVTEYGKKHLAPELENATNVFHPCSTSIQES CNGDINVWTHNTRKVSCENVVFLWGFKFGTTAGMLKNVLRSSHDIFSGEFDVKLVDKSCAIVVFWQQGLSKDFLDVMNSE EISGDLKELVSDGVRVTCYDTYKTMCRLGLWEMDLAESLERALESSRYDTKINGERHSSEIHWYNDNVINFDDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 159 | 158 | 3.2E-176 | – | |
| PANTHER | 2 | 159 | 158 | 3.2E-176 | – | |
| Gene3D | 31 | 109 | 79 | 1.6E-8 | ||
| Pfam | 62 | 154 | 93 | 1.8E-6 | ||
| Coils | 106 | 126 | 21 | - | – | |
| Gene3D | 110 | 154 | 45 | 1.6E-8 | ||
| Gene3D | 182 | 321 | 140 | 9.3E-7 | ||
| SUPERFAMILY | 185 | 285 | 101 | 3.19E-7 | ||
| Pfam | 185 | 246 | 62 | 1.0E-7 | ||
| PANTHER | 186 | 472 | 287 | 3.2E-176 | – | |
| PANTHER | 186 | 472 | 287 | 3.2E-176 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0595700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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