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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0680000 |
| Transcript ID | LotjaGi1g1v0680000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase-like protein; TAIR: AT3G44750.1 histone deacetylase 3; Swiss-Prot: sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1; TrEMBL-Plants: tr|I3T597|I3T597_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124733942..124738470) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGATGATCAAACTGTCCCTCATTTCCTTATTAGTCTGTTGAAAGATAATGAAAATCTTCCCTTAGACTATCTTAGTT TTGTTTTTTTGGGTGTCAGACCCTCCAAATTATCAAAAAAAAAAAAAAACGTGGCAAAATAAGATAGGTTATTCGTATAA CACTAGGAGTATAAATAAAAATCCTGTAAGCAATTTCACAATATTGTATTGCGAGCACTCAGCGCTCTTCTCTCACTCTC ACCGCTCTCGCTCTCGCTCTCGCTCTCGCTGCAGCAACCATGGAGTTTTGGGGTAACACTGCTCTCTCTCTCTTCTCCCC TCTTCCCCTAACCCTAACCCTAACCCTACTCGTATCTCTCATCGTTTACCTTCTGTATGTTGATTTTCCCTTTTTTCACT GTGAAATCATTTCAACTAGTACTAATCGTTGATCGTTCGTTTTATGGGAGCGAAGTTTCTGTTTGCATGTGTTGTTGAAC TCGTGCTTTTGCTGTGTCTATTACATTACCCTGTCTCTTCACCATGGATATTTCGATTTTCGATTTTGTGTATGGTTTTT CTGCATGATTAATGTCATTAGGTTTTGTGAATTTTGGTTTATGGAGAAAATTTGCGGAATTACGATATGGTTAGGGTTTT GGTCACAATTATCATCACCAACGATCCTGCTTGTTATTTAGCACCACCACCATGTAGTAATTGTTTGTTGACTGAAACAA CATTGTTGTCTTTTGCATCCTCGTAGATATATAGTTTTTCACTTCACAGGTCTGTCATCAAGTGATGGAGTTTGTGAACA AATTCATCACAGTACCAAAATTTGAGGGATATTGAAGGATACTTCTATTTGAATGTGTCTTCCTTTAAAATATTTGAATC TCAAGTTTCTGTTGTAGTTTAGATACAATGTAGTACAGTATTTTATATCAACTTTTGATAATGAGGTTTTTAGGGTGGTT CTTGAATCTTGAGCAGTTGCAAAATTAGTTCATTTGTTTTGCTGTTTGGTTTTTTGCATCCTGTTCATTACAGTATCAAA CCATGGTTGTATGATAGAAGCACAGATTTTGATACCAAATTTCCGTAGAGATTTGTATTGATGTTACATTCCAGGGTGAT ATTGATACTTGATACCCTAACAGGCATTTATAACTTAACATCGGATGTCTATTATCCTTTATAGGTGTTGAGGTGAAAAG TGGAGAATCTCTCAAGGTTGATCCGGAAGATGACAAGATTGTCCACCTTTCAATGGTATATGCTTTGATTAATGACACAT CAGCATTGATTCATTCTTCTTACTTGAAACTGATAATGGTTTTGTTGACATGATTAATTCTCATGTGACAGGCATGTCTG GGCGATGTCAGTAAGGATAAAGGGAGTGAAGCTGTATCCGTCTACGTGAAGTTTGGTGACCAGAAGCTTGCACTCGGAAC ACTCTCTGCTGATAAGTACCCTCAGATATCTTATGATTTGATATTTGAGAAGGAATTCGAGCTATCCCATAACTGGAAAC ATGGCAGTGTCTTCTTTACTGGATTTAAAGCTGAATCTCAGGCTGTATCATATCCTTTTTAATGCTATTTTACTTTGATA GGAGATTAAATATTGTCTTAGCAGTTAATATTAGTGCATTTTATGTCTCAGTTCTCACATAAATACTTTATATCCTTGAC TTCATTCTTCTTCTATCATTACTGACGGTGACGATGAAGATTCTGATGGTGAGATACTCTTCCTGATATAGTTTTATTAT TATTTTACCATTTACTTGCCTCTCAACTAATTCTATCACCTTTATTGTAGATTCTGATGGTGAAGATATCCCAATTAGTG TTTCCAATGGTAAATATACCCATCTTGTGTAGTTCTATTTTCTTAAAGCAGTTTATTTGAGGGGCACAGTCCCCTTACCC TAAACCAAAAAAAGCAGTTTCTATAGTTTATATTTTGAACATTTATGTAGGGAAACCTGAGATTGAGGTGAAGAATAGTG CCAAGCCTAATGCAAATGAGGCTAAACAAAAGGAGAAGATAACAGATCTGAAAAAGAATGAGAACAATAAGGGAAAAGCT GCAATTGCTGAAGATGAAGAAGATTCTTCTGGATCTGACACTGATAATACTAGTGAAGATGAGGTATTCATATAATCTAG AACGTGATTTATAATATTTAATGGATTGTTAATTGTCTGAAAGTTTATTATGTGAATAGATGCTGATGCACAGATTTGTT TGATAGGATCTAATCTTCCAGCTGCTATTATTGAATGAAATTAATTGCTTTGACAAAACTGGTGATTAGTCAGAAAAGGC AGAATACTCAGTTTTTGTGCCAAAAATGCATGGCTATGCCGTTGCTAGATATATGAGAGAAACTTTATCCTTTACAACTA AAGCATTCCTGTGATGATTCCTTTGGTTGGAACCGCATACAAGCATTAAGCATGCACAAAGTCATTACTTGTGCACATTC CCGCATATAAGAGGATTTGGTTTTCACATGTATTTTTGCTCTTGTTTTTATTCCCGTTAGTTGTATTCTCTCATGCTATT AGATCAGTTTGTGACAATAGAGTTTATGCATAATTATTATAGTTCGGATTGGTTAGCGGTTGTTCAACTTTTCCCCAGAA TCCCTTACTCATGAGTCTGCTGCTCTGTCATGATAATAGTCCTCAACTGCGTGTTCCAAGTTTGATTTTAAAATATGCTT GTCTGTCCTATGTGTTTGTAATTTGAATGATCAAATCTAGTAACCAAAACAATTGAATGATCAAATCTGCTGGCCTATCA TGATAACAGTCCTCAACAGCCATAATTCTGATCAGTGATTTAGATTATAGGATATTTTAAATTACTGGTATTTATGTTTG TTTTGTTAATTATTGCTGTCTTTTCCTATAATGTATTGTTTAGCCAATGCCAAATGGTGGGGTAGATAGTAGTGAAGATG ATGATGATAGCGATGACGACGATGATGAAGACGATGATGAGGATGAGGATGATGACGACGATGATGAGGAAACACCCAAG AAGGTAAAGAGGGACTATACTTTGCTTCATATTTGTTGTTGATTTTGAATTTAACTTTTGTTTTGTTATAGGCTGAAGGG AGCAAGAAGCGGGTCCTTGATTCTCCTAAGAACACCCCTGTTCCTGTGAAGAAAGCGAAATTTGTTACTCCTCAGAAGAC TGGTCAGTTTTTTGTTTTTGGGTACTCATTCTTGTGTGAGATTTGTTTTTGTGAATTGTAGATTATGTTTTTCACCCCCA TGTGCAGCATTTTATTGGATACATATGTTCATTTTGGGCATGTTAAATTGGATATGGATGCTCATATTTGGGCACGCTAA ACTGGAGACAATTATTAACATGTGAATAATGTCATCTAGCAAGTTACAATTAAGATGTGTGAATAATGCTCATATGTATA AGGTATCAGAGTAGAGCGGTAGCTAATAACTACATTTTGTTTTGGTACTTGGTATCACGGTATCATGGCACCTAGTTTGT CCCAAGAATGTGCTACTTACCAAGTTACATTTTCCTGGAGCTGGCATTTGCAGTAGGTTAAAGTTAAACTACCTTGTGAT TTATGATTCACGGTATAACTTATTTGGGCTAAAGTACGGTTAAACCACATTTTCTCCAACTCGTGGACAATTAAAGTTGG TAGTCATAATTTGGTTTTTTGGTTGGATTAATAAAATGAAACAAAACTGGAGGACAGAAGTACCATTACCATTAGGAAAC AAAACAAATCTGGGATTGCTAGTTTAACCACGTTTCACTTGTCTTTCTGCGCATGAATGTTTGCTGTTAACACAGTAAAA TTGTAATGACATTGATGATAATTTATGATCTGTTTTCAGATAGCAAGAATGTTGCCCATGTTGCAACTCCTTACCCTAAG CAGGCTGGTAAGGCATCTGCAAGCACTAAGCAGCCAGCGAAGCCGCAGACTCCAAAGTCAGGTGGAGAATACAGCTGCAA GCCTTGTAACAGGTGATTGGAATTGTCTTCTTCTCATATTTATTAGGCTTCTTATTCCCCTTTCCTTTTTATCCTTCTAA ATAATCTGGTTCGTATTGGTTGACTCAAATTTTATATTTCCTTGCAGGTCATTTAAGACTGAAGATGCCTTAGGTTCTCA TAACAAGGCCAAGCACAGTGCAGCTAAGTGAAGGGTTGATTGTCAGCTTTTGACCTGAATAGTGAGCATGTCAATGTTTT TGAATTTCCGATGACTGAAAAAACAGTTTAGGTGATTTGGGAAAGCTAGACTAGTAGTTTTGGTTTTGTTGAGGTTATTA TTCAACTTGGATTTATCAAATTTGAAAACGAATCTATTTTCTGGCTACATTTTCCGTTCCCCTCCGTTTACGCATACAAA TGCTTGCTCTAGTATGGTTATATTAAACTGTGCTCGAGTAATAAATTCAGAACGAGTGTTACGTAATGGAATTGGAAACA TCTGTTTCTATAAGAGACTTGAGAACAATCATACATAGTAATAACAAAG
CDS sequence (LotjaGi1g1v0680000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGAAGATGACAAGATTGTCCACCTTTC AATGGCATGTCTGGGCGATGTCAGTAAGGATAAAGGGAGTGAAGCTGTATCCGTCTACGTGAAGTTTGGTGACCAGAAGC TTGCACTCGGAACACTCTCTGCTGATAAGTACCCTCAGATATCTTATGATTTGATATTTGAGAAGGAATTCGAGCTATCC CATAACTGGAAACATGGCAGTGTCTTCTTTACTGGATTTAAAGCTGAATCTCAGGCTGTATCATATCCTTTTTAA
Protein sequence (LotjaGi1g1v0680000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFWGVEVKSGESLKVDPEDDKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTLSADKYPQISYDLIFEKEFELS HNWKHGSVFFTGFKAESQAVSYPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 97 | 97 | 8.1E-39 | – | |
| Gene3D | 1 | 101 | 101 | 1.4E-7 | – | |
| PANTHER | 1 | 97 | 97 | 8.1E-39 | – | |
| SUPERFAMILY | 3 | 74 | 72 | 5.76E-6 | ||
| Pfam | 3 | 93 | 91 | 2.0E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0680000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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