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IPR036824 is a Nucleoplasmin core domain superfamily.
<p>This entry represents the core structural domain superfamily for the nucleoplasmin (Np) family of histone chaperone proteins. This core domain is formed by an 8-stranded β barrel [[cite:PUB00032376]].</p> <p>The three branches of the Np family, including nucleophosmin (NO38/B23), nucleoplasmin (Np), and nucleoplasmin-like proteins (NLP), bind core histones and assemble nucleosomes<i>in vitro</i>assays. Even though they have different histone preferences, it has been suggested that Np family members may share a general mechanism for binding histones [[cite:PUB00032376]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Histone deacetylase-like protein; TAIR: AT3G44750.1 histone deacetylase 3; Swiss-Prot: sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1; TrEMBL-Plants: tr|I3T597|I3T597_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680000 | 7 | ||
| – | Peptidylprolyl isomerase; TAIR: AT4G25340.1 FK506 BINDING PROTEIN 53; Swiss-Prot: sp|Q93ZG9|FKB53_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53; TrEMBL-Plants: tr|A0A151SCX5|A0A151SCX5_CAJCA Peptidylprolyl isomerase; Found in the gene: LotjaGi2g1v0445300 | 16 | ||
| – | Peptidylprolyl isomerase; TAIR: AT4G25340.1 FK506 BINDING PROTEIN 53; Swiss-Prot: sp|Q93ZG9|FKB53_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53; TrEMBL-Plants: tr|A0A151SCX5|A0A151SCX5_CAJCA Peptidylprolyl isomerase; Found in the gene: LotjaGi2g1v0445300 | 14 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 33.33 |