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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR041232
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.809s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0680000.1
n.a. Histone deacetylase-like protein; TAIR: AT3G44750.1 histone deacetylase 3; Swiss-Prot: sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1; TrEMBL-Plants: tr|I3T597|I3T597_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680000 LjG1.1_chr1 124733942 124738470 +
2 domain predictions
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LotjaGi1g1v0680000.2
n.a. Histone deacetylase-like protein; TAIR: AT5G03740.1 histone deacetylase 2C; Swiss-Prot: sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1; TrEMBL-Plants: tr|I3T597|I3T597_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680000 LjG1.1_chr1 124734134 124738487 +
2 domain predictions
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LotjaGi2g1v0025700_LC.1
n.a. Peptidylprolyl isomerase; TAIR: AT3G12340.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|F4J9Q6|FKB43_ARATH Peptidyl-prolyl cis-trans isomerase FKBP43; TrEMBL-Plants: tr|I3SNR8|I3SNR8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0025700_LC LjG1.1_chr2 8729301 8734907 -
2 domain predictions
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LotjaGi2g1v0025700_LC.5
n.a. Peptidylprolyl isomerase; TAIR: AT3G12340.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|F4J9Q6|FKB43_ARATH Peptidyl-prolyl cis-trans isomerase FKBP43; TrEMBL-Plants: tr|I3SNR8|I3SNR8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0025700_LC LjG1.1_chr2 8730285 8734856 -
2 domain predictions
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LotjaGi2g1v0025700_LC.6
n.a. Peptidylprolyl isomerase; TAIR: AT3G12340.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|F4J9Q6|FKB43_ARATH Peptidyl-prolyl cis-trans isomerase FKBP43; TrEMBL-Plants: tr|I3SNR8|I3SNR8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0025700_LC LjG1.1_chr2 8730354 8734834 -
2 domain predictions
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LotjaGi2g1v0026800.1
n.a. Peptidylprolyl isomerase; TAIR: AT4G25340.1 FK506 BINDING PROTEIN 53; Swiss-Prot: sp|Q93ZG9|FKB53_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53; TrEMBL-Plants: tr|A0A072UIJ4|A0A072UIJ4_MEDTR Peptidylprolyl isomerase; Found in the gene: LotjaGi2g1v0026800 LjG1.1_chr2 9034592 9040620 +
2 domain predictions
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LotjaGi2g1v0026800.2
n.a. Peptidylprolyl isomerase; TAIR: AT4G25340.1 FK506 BINDING PROTEIN 53; Swiss-Prot: sp|Q93ZG9|FKB53_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53; TrEMBL-Plants: tr|A0A072UIJ4|A0A072UIJ4_MEDTR Peptidylprolyl isomerase; Found in the gene: LotjaGi2g1v0026800 LjG1.1_chr2 9034592 9040620 +
2 domain predictions
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LotjaGi2g1v0445300.1
n.a. Peptidylprolyl isomerase; TAIR: AT4G25340.1 FK506 BINDING PROTEIN 53; Swiss-Prot: sp|Q93ZG9|FKB53_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53; TrEMBL-Plants: tr|A0A151SCX5|A0A151SCX5_CAJCA Peptidylprolyl isomerase; Found in the gene: LotjaGi2g1v0445300 LjG1.1_chr2 94050675 94054981 -
2 domain predictions
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LotjaGi2g1v0445300.2
n.a. Peptidylprolyl isomerase; TAIR: AT4G25340.1 FK506 BINDING PROTEIN 53; Swiss-Prot: sp|Q93ZG9|FKB53_ARATH Peptidyl-prolyl cis-trans isomerase FKBP53; TrEMBL-Plants: tr|A0A151SCX5|A0A151SCX5_CAJCA Peptidylprolyl isomerase; Found in the gene: LotjaGi2g1v0445300 LjG1.1_chr2 94051075 94054977 -
2 domain predictions
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LotjaGi3g1v0172700.1
n.a. Histone deacetylase, putative; TAIR: AT5G03740.1 histone deacetylase 2C; Swiss-Prot: sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1; TrEMBL-Plants: tr|C6TGQ0|C6TGQ0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0172700 LjG1.1_chr3 23877166 23880098 -
2 domain predictions
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LotjaGi3g1v0480900.1
n.a. Histone deacetylase, putative; TAIR: AT5G22650.2 histone deacetylase 2B; Swiss-Prot: sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1; TrEMBL-Plants: tr|I3S5Y3|I3S5Y3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0480900 LjG1.1_chr3 89831587 89834913 +
2 domain predictions
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