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LotjaGi1g1v0690800.1

Overview

Field Value
Gene ID LotjaGi1g1v0690800
Transcript ID LotjaGi1g1v0690800.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Cytokinin riboside 5'-monophosphate phosphoribohydrolase; TAIR: AT2G37210.1 lysine decarboxylase family protein; Swiss-Prot: sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3; TrEMBL-Plants: tr|V7BFK4|V7BFK4_PHAVU Cytokinin riboside 5'-monophosphate phosphoribohydrolase; Found in the gene: LotjaGi1g1v0690800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:125891808..125896389) extracted from Lotus japonicus Gifu genome v1.2.

GGAAGAGTGGTAGTGAAGCAAGCATACACTAGAGGTTGTTGTTTAGCAATTGTAGTTTGTTTGAGACAAAACAATATTGT TTTGTTTGAGAATCTTGTGTTGTGTGTGTTTGTGTCTTTGTGTGGTTGTGAAAGTTAGTTAATATACAACAACAAAGTAA CTACCTTTACCTTACAAGTTACAACTAACAAATGGAGAAACATGGTGAGATAAGGCACTCAAAGTTCAAAAGGATTTGTG TCTTCTGTGGGAGTAGCCCTGGCAAGAAGCCTAGTTATCAAGATGCTGCCATTGAGCTTGGAAATGAACTGGTTTGTATT GTATATATAAACTTTTCATGCTTTTCTCTGTTTCCTACATTATGAACACCCATTTTTTTCAGCTTATTCAGTGTTTGTTT GCCTCAAATGTTTTGTTTTTGTGTTTATGCTTCTTGAGCTGAATGAGATAAGATCAGAAGGAAATGGTTAAACTTTGTGA TGTGACATGTTTGATTATGCTGCTTCCATTGTGAAATTTTGTTCATACACATGTTCATGAGTTTGACTCTTTGCAAATCC AAATTCATGTTGGTTAATTCCTCATTGAAAAAAATGCTGTTTATTGTTGCTGAGAGATTGAAAGTCTCCATTTTTGTTTT CCTCTTGAGCTTTTTAGCTCAGTAGCTCAGAACAGAACAGTGTACGGACTCACAAGTGTCTTAAGCTGAGTGAGCGTTGA GGAATCAATTCTTTTTGGTCTTTGCTTTCCAAACAGTTAAAAATGGATGCACTGTCATGTGATTAATTGTTATTTTTTTG GCATCATACACAACACAGTACACAATCATAGCCACCATTGTTTGCTTTTGGTTATTTAGTATTTCTAAGCTGAGTAATTA AGTGTGTGTTTTTTTTAATGGTCTGTGAAGGTTTCAAGGAACATTGATCTGGTGTATGGTGGGGGAAGCATTGGCCTCAT GGGATTGGTTTCACAAGCTGTTCATGATGGCGGTCGGCATGTCATTGGGTAAGTGCATGTTCGAATACAAGGTATAAAAG CACATTAAGCCAAAATCATGTGGATAGAAACAACTTTTCCTAAAAAAAAATTTTATGTCCAACATGATTTTAGCTTTAGG GTGATTTTATTGACTCATTCTCTTTTTTATTTGACCCTTTTTCATCCAATTTCTCTTCCTCTTTTTCCCCCCAAAGGTGT TGTTGTTGGGGAAAAGGGAAGAACATGAGAACAAGAACTCATGATAGTCAATGAGTAATCCACAGTGCTTTTTGTTGGCC TCTTTCACCATGAACACTCACTGTAGTCTTTGTCATTTTATTGTCCCTTGTTGCAGAGTTATTCCCAAGACGCTCATGCC TCGAGAGGTATGTCTGTTTCAGCCAGGAGGAAAAGCTTAACACCTTTTCTTCCTTCTCCTAATAAAGTATTTGCTATTGC TATTTGTCTTTCTTATTTTATTCTTAGGAAGAACTTTTTATGAACAGCTTCTAAAGTGTCAAAATTGATTCTGAGAAAAT AAAAACTGCTATCTTAGAATTTTACAGTTTTTTGTTGTTTGTTAAAACTAGTTTCTTTCTTTTGGGCCAGTGCTTAACTT GTTACTCTAGGAATATACCACTTGGATACCTGGCACTGTTGTCATATTCTGTTTTTTTTCTTTTGCAAATAAACTATTTT TTTGTTAAAAAAGTGATTTTTTTTCTCATTTGATTTGGTATCCTCTTGCAGCTAACTGGTGAAACAGTGGGAGAAGTGAA GGCTGTGGCAAATATGCACCAGAGGAAAGCTGAGATGGCTAAGCATTCAGATGCCTTTATTGCCTTACCAGGTTAGCCTT CAAATAGTGAATATGTTTGTAAGTTCTTCTACGATTGATTCTATAGGTGAATAAATTTTTAGGTTTCATATTTGATTATG AGAAAACAGAACATGATAATGATTTCTTACGCGTTAGAATCAGATGCACACCAACATTAAAATACTAGTGTCTTTGAACA AAAGCTTTCTAGTTATAGCGTGTAGTAATGACCATATCTCAGTGTCGGATTCTTTACTAGAAGGCTAAAAAGCATTTTTG GCCCCTGATATTTCAAGTTTGTGCAAATTCTGCCCCTATCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAG TGCACCGTCTACCCCTGACGGAGGGGTAGACGATGCACTGTTTGAAAACATGAGGGGTAGACAATGCACTGTTTGAAAAC ATGAGGGGTAGACGATGCACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTAGAGGCAGAATTTGTAC AAACTTGAAACATCAGGGGCCAAAAGTGCATTTTAACCTTACTAGAAATAGCTCACCGACATTTTACCTTTGATCTCTCT GGGCTACTTGTGTGTTGCTTTTAAACATTGTTTTGTTTGCAAAAGTTGATTTACAAATAAATTAATTAAAAGTTTGCATA ACCTCTATATTATTGAGAAAAGAAAAGTTAATCTAAATATATTCGAAAAAGTTCTTAGTCCAAAAATCTTTGATGACTTT CTGACACACATCCCAATGCTATGATTAGAGAGCAACCTTTCAAAGCTAGGTGATATGATCATGACATTGACCTTACTTGA CCCCTTATGATAAACATTGGACTAAGAATCAGAGCTTTCTGCGGCTCTGAGCAAAACTGTGGTTGAATACAATTTTCTTT CTTCTACTTTGGTTTAAAACTTGATGTGATTCTGCTAAGCTTCTTTCCTTTGATAGACAATAGAGGTATAGAAAGAGAAC TTTCACAAAATAACGTTTACAACTAGCACCTGCAGCTGACACATAACAATTGCTTGACCCTTTTTCAAAGACTCTTACAC TGGTAGTTGTTACCATCCTGATGATTCCTGAGATATGTATTCATTGAGTACTGAAAACTAGTGACAGAGAGAGCCAGAGA GAGAGAGGCACGCAAAGACAGAGTTGTCATTCACTCTGTCACTCTGCATTCTTGGATCCCTCCTATGAAAATGGATTCCC CCAGGAGTGAGGTTTTCCCTTCACACTGCCAAATCCATAACTACATTTGGACACAAAAGCTCATAGTACTAAGTACTACA TTCACGATGCACCCAACATAGAATAGCTAATAATCCTAATTCCTAATCAAGTGGATTTTAAAGACACCATAGCTTAAGTT AATAAAACTAGACATTGAATTTTTTTCAAAGTATTCAATTGAATTTCAATTCCCTTTTTCTGCTAACATGATGTGAGCCA GTATAATAGCATGCATGTTTGGTTTCATGTTGAAACATTTTAGAATCAATTCTGTCAAGAAGCTAAAAGAGTTGAGTAAA CACGTCTTGGATTCTATCCAGATCGTGAAACCAAACATGAATTAAGTAAAATTGTTCAATTAGACTTTGTCTTACCCATT TTCATCTCAGTCATGTATGGCTTATCCTATGTTTATGTGTTTAATTTCTTGAAAAAAACTGATGGTGGTTATATGCAGGG GGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCTCAACTTGGGATTCATGACAAGCCTGTAATTGACTT GTCCCATTTCACTAATAATCCATATGATTTATCAATTTATGTAACATTTCACATCCTAATCATGCTTGGTATTCCAAAAT TGTAGGTTGGATTAGTAAATGTTGATGGGTACTTTAGCTCCTTGTTGTCATTCATTGACAAAGCTGTGGAAGAGGGGTTT ATTAGTCCAAATGCCCGCCACATAATTGTTTCAGCACCAACTGCAAAAGAGTTGGTGAAGAAATTGGAGGTAATTTTTCC TAAACTATATGCATTTTCCATCTTGTTACATGAAAACAAAGATAAAATTTTCCACTTCTGATCAGCTTGATATCCTCCTA TTCCTTTTCAGTTTGATTCCAACAATTTGAAGCAATTGTCCTATGTGAAATCACTTTCTTTGATTTCATTAGATGAGTCA CATCAAAACAAAAGTTGCTCTGATTCAATACTATATAAGTAGATAATTGAAAGATTTGTAAATGAAAAAACAAAAACTTA ATTTTCAAATCAATTGTATATCTAATCTAATCAACTTTTCTTCTGCAAAATTGAACTTTTCTATATATATGAAAGTTGAA AATGAGACAATGTTGTTGTTTTTTAATTCATAGGAATATGTCCCTTGTCATGAGAGTGTTGCTTCCAAGCTGAACTGGCA GATGGAACAGCAGCTAGCTTACCCTCAAGAATATGACATCTCAAGGTAGCTGCTGCTGGAGGGGTTTAACTTCACGTGCA CGGAAGAATACACCATAGAGAATTTTGGAGGTGGAAGAAGCTATTTTCGACTATCATTTTTCTGTTTCTCCTCTTTTAGT TTCTTGTGTAAATTACTTGGATTGACCTGAATATGTAAAACTCTACTTTATCACCTTGTGAAACTCTGATTTTCTTAGAG GTGTAAGTATGGAATTATTCTTCAATGCCATTTAAGGATCATTAGTACAATTTCCATAGACTCAATCAATCAATCAGCAT GGTAATTCTTGCAAGGTAACAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0690800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAACATGGTGAGATAAGGCACTCAAAGTTCAAAAGGATTTGTGTCTTCTGTGGGAGTAGCCCTGGCAAGAAGCC TAGTTATCAAGATGCTGCCATTGAGCTTGGAAATGAACTGGTTTCAAGGAACATTGATCTGGTGTATGGTGGGGGAAGCA TTGGCCTCATGGGATTGGTTTCACAAGCTGTTCATGATGGCGGTCGGCATGTCATTGGAGTTATTCCCAAGACGCTCATG CCTCGAGAGCTAACTGGTGAAACAGTGGGAGAAGTGAAGGCTGTGGCAAATATGCACCAGAGGAAAGCTGAGATGGCTAA GCATTCAGATGCCTTTATTGCCTTACCAGGGGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCTCAAC TTGGGATTCATGACAAGCCTGTTGGATTAGTAAATGTTGATGGGTACTTTAGCTCCTTGTTGTCATTCATTGACAAAGCT GTGGAAGAGGGGTTTATTAGTCCAAATGCCCGCCACATAATTGTTTCAGCACCAACTGCAAAAGAGTTGGTGAAGAAATT GGAGGAATATGTCCCTTGTCATGAGAGTGTTGCTTCCAAGCTGAACTGGCAGATGGAACAGCAGCTAGCTTACCCTCAAG AATATGACATCTCAAGGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0690800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKHGEIRHSKFKRICVFCGSSPGKKPSYQDAAIELGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLM PRELTGETVGEVKAVANMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFSSLLSFIDKA VEEGFISPNARHIIVSAPTAKELVKKLEEYVPCHESVASKLNWQMEQQLAYPQEYDISR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31223:SF43
1 218 218 2.5E-138 –
PANTHER
PTHR31223
1 218 218 2.5E-138 –
Gene3D
G3DSA:3.40.50.450
3 189 187 1.6E-86 –
SUPERFAMILY
SSF102405
11 190 180 1.53E-61 –
TIGRFAM
TIGR00730
13 190 178 4.3E-61
IPR005269
Pfam
PF03641
57 187 131 6.6E-46
IPR031100

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0690800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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