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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0690800 |
Transcript ID | LotjaGi1g1v0690800.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cytokinin riboside 5'-monophosphate phosphoribohydrolase; TAIR: AT2G37210.1 lysine decarboxylase family protein; Swiss-Prot: sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3; TrEMBL-Plants: tr|A0A0B2NYX4|A0A0B2NYX4_GLYSO Cytokinin riboside 5'-monophosphate phosphoribohydrolase; Found in the gene: LotjaGi1g1v0690800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125892011..125895853) extracted from Lotus japonicus Gifu genome v1.2.
GGTGAGATAAGGCACTCAAAGTTCAAAAGGATTTGTGTCTTCTGTGGGAGTAGCCCTGGCAAGAAGCCTAGTTATCAAGA TGCTGCCATTGAGCTTGGAAATGAACTGGTTTGTATTGTATATATAAACTTTTCATGCTTTTCTCTGTTTCCTACATTAT GAACACCCATTTTTTTCAGCTTATTCAGTGTTTGTTTGCCTCAAATGTTTTGTTTTTGTGTTTATGCTTCTTGAGCTGAA TGAGATAAGATCAGAAGGAAATGGTTAAACTTTGTGATGTGACATGTTTGATTATGCTGCTTCCATTGTGAAATTTTGTT CATACACATGTTCATGAGTTTGACTCTTTGCAAATCCAAATTCATGTTGGTTAATTCCTCATTGAAAAAAATGCTGTTTA TTGTTGCTGAGAGATTGAAAGTCTCCATTTTTGTTTTCCTCTTGAGCTTTTTAGCTCAGTAGCTCAGAACAGAACAGTGT ACGGACTCACAAGTGTCTTAAGCTGAGTGAGCGTTGAGGAATCAATTCTTTTTGGTCTTTGCTTTCCAAACAGTTAAAAA TGGATGCACTGTCATGTGATTAATTGTTATTTTTTTGGCATCATACACAACACAGTACACAATCATAGCCACCATTGTTT GCTTTTGGTTATTTAGTATTTCTAAGCTGAGTAATTAAGTGTGTGTTTTTTTTAATGGTCTGTGAAGGTTTCAAGGAACA TTGATCTGGTGTATGGTGGGGGAAGCATTGGCCTCATGGGATTGGTTTCACAAGCTGTTCATGATGGCGGTCGGCATGTC ATTGGGTAAGTGCATGTTCGAATACAAGGTATAAAAGCACATTAAGCCAAAATCATGTGGATAGAAACAACTTTTCCTAA AAAAAAATTTTATGTCCAACATGATTTTAGCTTTAGGGTGATTTTATTGACTCATTCTCTTTTTTATTTGACCCTTTTTC ATCCAATTTCTCTTCCTCTTTTTCCCCCCAAAGGTGTTGTTGTTGGGGAAAAGGGAAGAACATGAGAACAAGAACTCATG ATAGTCAATGAGTAATCCACAGTGCTTTTTGTTGGCCTCTTTCACCATGAACACTCACTGTAGTCTTTGTCATTTTATTG TCCCTTGTTGCAGAGTTATTCCCAAGACGCTCATGCCTCGAGAGGTATGTCTGTTTCAGCCAGGAGGAAAAGCTTAACAC CTTTTCTTCCTTCTCCTAATAAAGTATTTGCTATTGCTATTTGTCTTTCTTATTTTATTCTTAGGAAGAACTTTTTATGA ACAGCTTCTAAAGTGTCAAAATTGATTCTGAGAAAATAAAAACTGCTATCTTAGAATTTTACAGTTTTTTGTTGTTTGTT AAAACTAGTTTCTTTCTTTTGGGCCAGTGCTTAACTTGTTACTCTAGGAATATACCACTTGGATACCTGGCACTGTTGTC ATATTCTGTTTTTTTTCTTTTGCAAATAAACTATTTTTTTGTTAAAAAAGTGATTTTTTTTCTCATTTGATTTGGTATCC TCTTGCAGCTAACTGGTGAAACAGTGGGAGAAGTGAAGGCTGTGGCAAATATGCACCAGAGGAAAGCTGAGATGGCTAAG CATTCAGATGCCTTTATTGCCTTACCAGGTTAGCCTTCAAATAGTGAATATGTTTGTAAGTTCTTCTACGATTGATTCTA TAGGTGAATAAATTTTTAGGTTTCATATTTGATTATGAGAAAACAGAACATGATAATGATTTCTTACGCGTTAGAATCAG ATGCACACCAACATTAAAATACTAGTGTCTTTGAACAAAAGCTTTCTAGTTATAGCGTGTAGTAATGACCATATCTCAGT GTCGGATTCTTTACTAGAAGGCTAAAAAGCATTTTTGGCCCCTGATATTTCAAGTTTGTGCAAATTCTGCCCCTATCTAT TTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGCACCGTCTACCCCTGACGGAGGGGTAGACGATGCACTGTTT GAAAACATGAGGGGTAGACAATGCACTGTTTGAAAACATGAGGGGTAGACGATGCACTGTTTGAAAACATGAGGGGTAGA AACATCGACAAAAATAGAGTAGAGGCAGAATTTGTACAAACTTGAAACATCAGGGGCCAAAAGTGCATTTTAACCTTACT AGAAATAGCTCACCGACATTTTACCTTTGATCTCTCTGGGCTACTTGTGTGTTGCTTTTAAACATTGTTTTGTTTGCAAA AGTTGATTTACAAATAAATTAATTAAAAGTTTGCATAACCTCTATATTATTGAGAAAAGAAAAGTTAATCTAAATATATT CGAAAAAGTTCTTAGTCCAAAAATCTTTGATGACTTTCTGACACACATCCCAATGCTATGATTAGAGAGCAACCTTTCAA AGCTAGGTGATATGATCATGACATTGACCTTACTTGACCCCTTATGATAAACATTGGACTAAGAATCAGAGCTTTCTGCG GCTCTGAGCAAAACTGTGGTTGAATACAATTTTCTTTCTTCTACTTTGGTTTAAAACTTGATGTGATTCTGCTAAGCTTC TTTCCTTTGATAGACAATAGAGGTATAGAAAGAGAACTTTCACAAAATAACGTTTACAACTAGCACCTGCAGCTGACACA TAACAATTGCTTGACCCTTTTTCAAAGACTCTTACACTGGTAGTTGTTACCATCCTGATGATTCCTGAGATATGTATTCA TTGAGTACTGAAAACTAGTGACAGAGAGAGCCAGAGAGAGAGAGGCACGCAAAGACAGAGTTGTCATTCACTCTGTCACT CTGCATTCTTGGATCCCTCCTATGAAAATGGATTCCCCCAGGAGTGAGGTTTTCCCTTCACACTGCCAAATCCATAACTA CATTTGGACACAAAAGCTCATAGTACTAAGTACTACATTCACGATGCACCCAACATAGAATAGCTAATAATCCTAATTCC TAATCAAGTGGATTTTAAAGACACCATAGCTTAAGTTAATAAAACTAGACATTGAATTTTTTTCAAAGTATTCAATTGAA TTTCAATTCCCTTTTTCTGCTAACATGATGTGAGCCAGTATAATAGCATGCATGTTTGGTTTCATGTTGAAACATTTTAG AATCAATTCTGTCAAGAAGCTAAAAGAGTTGAGTAAACACGTCTTGGATTCTATCCAGATCGTGAAACCAAACATGAATT AAGTAAAATTGTTCAATTAGACTTTGTCTTACCCATTTTCATCTCAGTCATGTATGGCTTATCCTATGTTTATGTGTTTA ATTTCTTGAAAAAAACTGATGGTGGTTATATGCAGGGGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGG CTCAACTTGGGATTCATGACAAGCCTGTAATTGACTTGTCCCATTTCACTAATAATCCATATGATTTATCAATTTATGTA ACATTTCACATCCTAATCATGCTTGGTATTCCAAAATTGTAGGTTGGATTAGTAAATGTTGATGGGTACTTTAGCTCCTT GTTGTCATTCATTGACAAAGCTGTGGAAGAGGGGTTTATTAGTCCAAATGCCCGCCACATAATTGTTTCAGCACCAACTG CAAAAGAGTTGGTGAAGAAATTGGAGGTAATTTTTCCTAAACTATATGCATTTTCCATCTTGTTACATGAAAACAAAGAT AAAATTTTCCACTTCTGATCAGCTTGATATCCTCCTATTCCTTTTCAGTTTGATTCCAACAATTTGAAGCAATTGTCCTA TGTGAAATCACTTTCTTTGATTTCATTAGATGAGTCACATCAAAACAAAAGTTGCTCTGATTCAATACTATATAAGTAGA TAA
CDS sequence (LotjaGi1g1v0690800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTGGTTTCACAAGCTGTTCATGATGGCGGTCGGCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGA GCTAACTGGTGAAACAGTGGGAGAAGTGAAGGCTGTGGCAAATATGCACCAGAGGAAAGCTGAGATGGCTAAGCATTCAG ATGCCTTTATTGCCTTACCAGGGGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCTCAACTTGGGATT CATGACAAGCCTGTTGGATTAGTAAATGTTGATGGGTACTTTAGCTCCTTGTTGTCATTCATTGACAAAGCTGTGGAAGA GGGGTTTATTAGTCCAAATGCCCGCCACATAATTGTTTCAGCACCAACTGCAAAAGAGTTGGTGAAGAAATTGGAGTCCT ATGTGAAATCACTTTCTTTGATTTCATTAGATGAGTCACATCAAAACAAAAGTTGCTCTGATTCAATACTATATAAGTAG
Protein sequence (LotjaGi1g1v0690800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVANMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGI HDKPVGLVNVDGYFSSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLESYVKSLSLISLDESHQNKSCSDSILYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 133 | 133 | 1.1E-60 | – | |
PANTHER | 1 | 138 | 138 | 1.3E-88 | – | |
PANTHER | 1 | 138 | 138 | 1.3E-88 | – | |
SUPERFAMILY | 1 | 134 | 134 | 2.75E-42 | – | |
TIGRFAM | 1 | 134 | 134 | 4.7E-43 | ||
Pfam | 1 | 131 | 131 | 2.4E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0690800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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