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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0746900 |
| Transcript ID | LotjaGi1g1v0746900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA polymerase III polC-type; TAIR: AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q682U6|DPD1_ARATH Exonuclease DPD1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TW26|A0A151TW26_CAJCA DNA polymerase III polC-type; Found in the gene: LotjaGi1g1v0746900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131987910..131991840) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATATCAAAATAAGTGAATGTTTAGTTTTCAAATTAATCAAATATTGAATACCTCATAAATCAAAATCACTATTTCC AACACACATTTTGTTAGATTGGGTGAACGTGCAAGATGAAGGGAAGAGAAGTTGAGTGCAGTTGAAGTGAAAAAAGGGGC GATCCGCAACTTACGTTGTTGAACGGAGCACGCTCCCAATGTTCTGTCCCAACTTCTTCTCTCTGTCATTCTATAACTAC CCATTATCGTCCAAATGCTTTTCTTCTCAGTTTCATTCACATCCTCCTTCAGGTAACTTCTCATTCTTCTCTGTTTCAAT CTTTTCTTCCTGTATTGTTTTCATACATTTCCGGGAAAACCCAGTTATAATTTGATTGAAACAGGTCGCATTTTGTTCCA TGCCGTCATGCCCATATGTTGTTTGGATAAATGATGTAACAAAATCCCGCAAATGTGTTGTGTTGACCTTTTTGTTTGCT CGCTTAGGATTAGGATACTTTGAGGTTGGGATTTCATTGGAAAAACAGTGTTTGTTTGTGTGTGTGCAAGTTGAAGATTG TGAAAAGCTGGTTCATGGAATGTGATTAGTGTACTATTTACATCTCATGAATCCCTTTTAGATTGGTTGATTTGTTTGCA TAATATGGGTTAAATTTTGTTAAAATGTAAGCTTTCTGTTCAGTGTTTGTTGTAGAGTTAACCATTATTGCATCCATTTC AATTATGTGACATAAAAAATCATGAGTGTTACCTTATTGTTGCCACTGCTCTGCATATTGTTTTACAAATTGATGCTGAT TTTTAAAGGCAGGGCTGTGATTGTTCTTGTTCAATGAATTTTGTGATGTCAATGATAAACCTGCAGAATTTCTCCCCTTG AAGTTGTGTGCATTTCTTTTAGGCTGGGGGAAATATATATATTGCTTCTACTTTTCAGAGGGTTTTTTTTGCTGGCTCTA TATGGAAAAAGCCATATTGTATTGTAATTCAGCATAGATGTGGTTTCTTACTCAATAGGGTTTCTGCCATTCTTTGTTCT GCTTCAATAAATGATATATTTCATGCTTGTAAGGGGTCTAGTTGTCATTCTTGGTAAGAAAATTTTCTTTTTTGTTTGAT ATCTTTCTTTATTCTTCATCAATTTGTAAGTTGTGATTACCAGTTATATATTCATGGCTTTCTGTTATGCTGGATTTAGC ATTAGAAGATCCTACCTGTATATGATACTTCATGCCTGTTAAGGATATTTTTTTTTTTTTCGTTTATCACATTTTTCTTT ATTTCACCTTCATTTCAGGTTGTAGCTGTTTGCTAATTTAATAAAGGATTCTTGTAGTTGTTGTTATTGAATTCAGATGA AGACTGGATCGATGATTTTTTCGTTATTGCAACTACCTAGATGCAGAATACATAGCTTAGCTAATTATTGGGGTGAAACC TTCCCCAGCTTCAGTAACCCTCAAAATAATTCTAGCATCAGGCTGCTTAGTTCTAGAATCAATGGGCTTCAGGAAGGGCA CAGAAAGAAGTGGACTCGAAGACCTATAACTACAAACACAGAAGGCAAGGGGGGCACCAAATCAAGAAGTACCAAGCATG AAATTTTAAGTGAAACTACTTTGACAAGTTCCACAGTAAGTGTAAATAAAACACAGCTAGGTGAATTCCAGGATATTCAG TACTGTGACGTTAAAGAGATTGCTCAGAAAAAGAACTTGTCTAGCCTAGTCACTGTTATTGCTTTTGATATTGAGACCAC CGGGTTCGGCGCTAAGAATCATAGGATCATTGAGATTGCACTTAGAGACCTTCAGGGTGGTGAAAATAGCACCTTCCAAA CTCTTGTAAATCCTCAACGCTATGTTCCTAATTCAGATGTTCACGGCATTACTAATCAGATGGTGAACAGCCCTGACGTT CCAAGGTAACCTATATCTCTCTGGCTCTTGCATATTTTGGTCCTTGAGTTATGCTCGCCTTTGCAAAATATAGTATTCCT CTGTGTCTCTATAGCATAACCTCATCTTATGTGTGGAATTTTATTTGATAAGCCAATGTTAAAAAAAGTTTAAATATTGG AGTGTTTAGGGGTTGCCTGGTACTCCGAATAGTCTCACATCAAAAAGATGTGGGGATACCCTGGAAAATATCCCAAAAAG ATTGTAAACATGGGAAGAACACTGGGAGATTGTAAACATGGGAGGGTTTAGGGGTTGCCTGGTACTTTTGTTTTCGTTTT GACCACCATGTTTCCTTAGATATGATCAATTGTGACCACAATCACTAGTTTACTAGGGGATTTATGAAACATTGAGCTCT TCATTTTTCAATTGTTTTAGTGTGTTTGGTAGACATTAGAACAAGGTTCTTTTCTATGTTTTGTGCATATTAAAAGTAGC ACATAACATAAGGTAGGAAAAGTGGTACATTTCAGTTCTACCTAAAGGGTTGGAACTTGGAACCAGAAAGGATTTGTGTT TTGTTGTGTTCTGTTTGTGTGCCTAATGCTACCCAAGACTGTATACAAGAGAAACAGCATATATAATATCTTCTCACATT CATTTATTGAAAATGCCTTTCTTCGGAGTGTTTTTGGGTGGTTATGGGTAGAATTTTCCTCAAGTGGATAACTGGTTGTT CGGTTCTATATATGGGGGTTAGTAGCCCTTTAATAGTTGACTAAAGACCACGGTTGTGCAAAGTTTAAACTGACAAGACA AACACCGAAGGTGTTGACGAGGACTTTACCAACCTTGTACTATGGGTTGAAATCAGTTACTAAATGTTTTTTCGAGTGCA TTTAACTTTGGAAAGAATCAGGAAGAATCAGATTCTATATGTTTCTTCTTTATCACATGTTTCCAGTAACTATCATGTTT CCCATTTGATTTTCAATTGATTTGTTTATGTACATTGATGATTGAGTCTACTGAAACTATTAATTAATTATGCAAAGGTC ATGTTTTTGTGCTCTCATGGATTTTCTATAGGATGGAGGACCTTATTCCAATCTTGTTGCACTATGTTCGAAGCCGTGAG AAACCTGGGGGATATGTATTGTGGGTTGCTCATAATGCTCGCAGCTTTGATGTACCCTTCTTCATCAATGAGTTAGGTCG TTCTTCTGTCAAGATTCCTAGTAATTGGCTATTTTTGGACACCCTTCCTTTAGGTCGTGAACTAATGATGAAGTTGAAGG CGGAGTCTGAAGGTATTACTATCTTTCTCTCTGTCTCTCTTAAGGACAAAACTTACATAAAGTTCTTTATATATATTTCA TCGAGTTCTTCAACCATAACTGACTTGTGGATAACTTTTTTAAATTCAATCACCGATTCATAACAGAGTCATTTTTTATC AGAAAATAAAAATCCACGTGTCATTATTTGAGCGGCGAATACAAATAACAAAGAACTTGATCTAAGTTTTTTTTTTCCTT CTCTTAACATCACGCACACGCGCTAACAAGTCCTTGCTGTTTTTTTTTTTGTATGAAAGCCTTAACTTTTTACGGTGTCC CAGAGAAAAAACCTCCAGCAAACCTTGCTGCCCTCTGTGAGCACTACAATGTTAAACTAAATGGAGCAGCTCACAGAGCC ATGGTGGATGTGGACGCATTGTCTGTAATCTTTTCCAGGTTGACTTTTGATCTGAAACTGACCCTATCTGACCTTGTCGA AAAATCATTCCAAGAATCAGATATTACCAAGAAGAAGAAGAATTCAGACTAGTTTTCTGACAGTGTTTTTTGCATTCATG TTGTGACAAACATAAATTATTTGTAACAAAAAATGTACTTCTGAAGTTACTTGTAATTGTTAACCTATTATTCTTTAATG AAATCTCATTACCATGCTCAAAATTTTGAAGCTTTTGCACGGGGATACCTATGTGTATCTGGAGCCTTGGATTGGAAGGA AAAGGAGAGGG
CDS sequence (LotjaGi1g1v0746900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTGGATCGATGATTTTTTCGTTATTGCAACTACCTAGATGCAGAATACATAGCTTAGCTAATTATTGGGGTGA AACCTTCCCCAGCTTCAGTAACCCTCAAAATAATTCTAGCATCAGGCTGCTTAGTTCTAGAATCAATGGGCTTCAGGAAG GGCACAGAAAGAAGTGGACTCGAAGACCTATAACTACAAACACAGAAGGCAAGGGGGGCACCAAATCAAGAAGTACCAAG CATGAAATTTTAAGTGAAACTACTTTGACAAGTTCCACAGTAAGTGTAAATAAAACACAGCTAGGTGAATTCCAGGATAT TCAGTACTGTGACGTTAAAGAGATTGCTCAGAAAAAGAACTTGTCTAGCCTAGTCACTGTTATTGCTTTTGATATTGAGA CCACCGGGTTCGGCGCTAAGAATCATAGGATCATTGAGATTGCACTTAGAGACCTTCAGGGTGGTGAAAATAGCACCTTC CAAACTCTTGTAAATCCTCAACGCTATGTTCCTAATTCAGATGTTCACGGCATTACTAATCAGATGGTGAACAGCCCTGA CGTTCCAAGGATGGAGGACCTTATTCCAATCTTGTTGCACTATGTTCGAAGCCGTGAGAAACCTGGGGGATATGTATTGT GGGTTGCTCATAATGCTCGCAGCTTTGATGTACCCTTCTTCATCAATGAGTTAGGTCGTTCTTCTGTCAAGATTCCTAGT AATTGGCTATTTTTGGACACCCTTCCTTTAGGTCGTGAACTAATGATGAAGTTGAAGGCGGAGTCTGAAGCCTTAACTTT TTACGGTGTCCCAGAGAAAAAACCTCCAGCAAACCTTGCTGCCCTCTGTGAGCACTACAATGTTAAACTAAATGGAGCAG CTCACAGAGCCATGGTGGATGTGGACGCATTGTCTGTAATCTTTTCCAGGTTGACTTTTGATCTGAAACTGACCCTATCT GACCTTGTCGAAAAATCATTCCAAGAATCAGATATTACCAAGAAGAAGAAGAATTCAGACTAG
Protein sequence (LotjaGi1g1v0746900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTGSMIFSLLQLPRCRIHSLANYWGETFPSFSNPQNNSSIRLLSSRINGLQEGHRKKWTRRPITTNTEGKGGTKSRSTK HEILSETTLTSSTVSVNKTQLGEFQDIQYCDVKEIAQKKNLSSLVTVIAFDIETTGFGAKNHRIIEIALRDLQGGENSTF QTLVNPQRYVPNSDVHGITNQMVNSPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPS NWLFLDTLPLGRELMMKLKAESEALTFYGVPEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIFSRLTFDLKLTLS DLVEKSFQESDITKKKKNSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 337 | 335 | 9.7E-98 | – | |
| PANTHER | 3 | 337 | 335 | 9.7E-98 | – | |
| MobiDBLite | 54 | 80 | 27 | - | – | |
| SUPERFAMILY | 124 | 316 | 193 | 1.1E-35 | ||
| Gene3D | 125 | 327 | 203 | 8.6E-40 | ||
| SMART | 126 | 317 | 192 | 1.9E-33 | ||
| CDD | 128 | 308 | 181 | 7.9391E-37 | – | |
| Pfam | 128 | 304 | 177 | 6.4E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0746900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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