Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0746900.2

Overview

Field Value
Gene ID LotjaGi1g1v0746900
Transcript ID LotjaGi1g1v0746900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description DNA polymerase III polC-type; TAIR: AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q682U6|DPD1_ARATH Exonuclease DPD1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TW26|A0A151TW26_CAJCA DNA polymerase III polC-type; Found in the gene: LotjaGi1g1v0746900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:131987910..131991840) extracted from Lotus japonicus Gifu genome v1.2.

GAAAATATCAAAATAAGTGAATGTTTAGTTTTCAAATTAATCAAATATTGAATACCTCATAAATCAAAATCACTATTTCC AACACACATTTTGTTAGATTGGGTGAACGTGCAAGATGAAGGGAAGAGAAGTTGAGTGCAGTTGAAGTGAAAAAAGGGGC GATCCGCAACTTACGTTGTTGAACGGAGCACGCTCCCAATGTTCTGTCCCAACTTCTTCTCTCTGTCATTCTATAACTAC CCATTATCGTCCAAATGCTTTTCTTCTCAGTTTCATTCACATCCTCCTTCAGGTAACTTCTCATTCTTCTCTGTTTCAAT CTTTTCTTCCTGTATTGTTTTCATACATTTCCGGGAAAACCCAGTTATAATTTGATTGAAACAGGTCGCATTTTGTTCCA TGCCGTCATGCCCATATGTTGTTTGGATAAATGATGTAACAAAATCCCGCAAATGTGTTGTGTTGACCTTTTTGTTTGCT CGCTTAGGATTAGGATACTTTGAGGTTGGGATTTCATTGGAAAAACAGTGTTTGTTTGTGTGTGTGCAAGTTGAAGATTG TGAAAAGCTGGTTCATGGAATGTGATTAGTGTACTATTTACATCTCATGAATCCCTTTTAGATTGGTTGATTTGTTTGCA TAATATGGGTTAAATTTTGTTAAAATGTAAGCTTTCTGTTCAGTGTTTGTTGTAGAGTTAACCATTATTGCATCCATTTC AATTATGTGACATAAAAAATCATGAGTGTTACCTTATTGTTGCCACTGCTCTGCATATTGTTTTACAAATTGATGCTGAT TTTTAAAGGCAGGGCTGTGATTGTTCTTGTTCAATGAATTTTGTGATGTCAATGATAAACCTGCAGAATTTCTCCCCTTG AAGTTGTGTGCATTTCTTTTAGGCTGGGGGAAATATATATATTGCTTCTACTTTTCAGAGGGTTTTTTTTGCTGGCTCTA TATGGAAAAAGCCATATTGTATTGTAATTCAGCATAGATGTGGTTTCTTACTCAATAGGGTTTCTGCCATTCTTTGTTCT GCTTCAATAAATGATATATTTCATGCTTGTAAGGGGTCTAGTTGTCATTCTTGGTAAGAAAATTTTCTTTTTTGTTTGAT ATCTTTCTTTATTCTTCATCAATTTGTAAGTTGTGATTACCAGTTATATATTCATGGCTTTCTGTTATGCTGGATTTAGC ATTAGAAGATCCTACCTGTATATGATACTTCATGCCTGTTAAGGATATTTTTTTTTTTTTCGTTTATCACATTTTTCTTT ATTTCACCTTCATTTCAGGTTGTAGCTGTTTGCTAATTTAATAAAGGATTCTTGTAGTTGTTGTTATTGAATTCAGATGA AGACTGGATCGATGATTTTTTCGTTATTGCAACTACCTAGATGCAGAATACATAGCTTAGCTAATTATTGGGGTGAAACC TTCCCCAGCTTCAGTAACCCTCAAAATAATTCTAGCATCAGGCTGCTTAGTTCTAGAATCAATGGGCTTCAGGAAGGGCA CAGAAAGAAGTGGACTCGAAGACCTATAACTACAAACACAGAAGGCAAGGGGGGCACCAAATCAAGAAGTACCAAGCATG AAATTTTAAGTGAAACTACTTTGACAAGTTCCACAGTAAGTGTAAATAAAACACAGCTAGGTGAATTCCAGGATATTCAG TACTGTGACGTTAAAGAGATTGCTCAGAAAAAGAACTTGTCTAGCCTAGTCACTGTTATTGCTTTTGATATTGAGACCAC CGGGTTCGGCGCTAAGAATCATAGGATCATTGAGATTGCACTTAGAGACCTTCAGGGTGGTGAAAATAGCACCTTCCAAA CTCTTGTAAATCCTCAACGCTATGTTCCTAATTCAGATGTTCACGGCATTACTAATCAGATGGTGAACAGCCCTGACGTT CCAAGGTAACCTATATCTCTCTGGCTCTTGCATATTTTGGTCCTTGAGTTATGCTCGCCTTTGCAAAATATAGTATTCCT CTGTGTCTCTATAGCATAACCTCATCTTATGTGTGGAATTTTATTTGATAAGCCAATGTTAAAAAAAGTTTAAATATTGG AGTGTTTAGGGGTTGCCTGGTACTCCGAATAGTCTCACATCAAAAAGATGTGGGGATACCCTGGAAAATATCCCAAAAAG ATTGTAAACATGGGAAGAACACTGGGAGATTGTAAACATGGGAGGGTTTAGGGGTTGCCTGGTACTTTTGTTTTCGTTTT GACCACCATGTTTCCTTAGATATGATCAATTGTGACCACAATCACTAGTTTACTAGGGGATTTATGAAACATTGAGCTCT TCATTTTTCAATTGTTTTAGTGTGTTTGGTAGACATTAGAACAAGGTTCTTTTCTATGTTTTGTGCATATTAAAAGTAGC ACATAACATAAGGTAGGAAAAGTGGTACATTTCAGTTCTACCTAAAGGGTTGGAACTTGGAACCAGAAAGGATTTGTGTT TTGTTGTGTTCTGTTTGTGTGCCTAATGCTACCCAAGACTGTATACAAGAGAAACAGCATATATAATATCTTCTCACATT CATTTATTGAAAATGCCTTTCTTCGGAGTGTTTTTGGGTGGTTATGGGTAGAATTTTCCTCAAGTGGATAACTGGTTGTT CGGTTCTATATATGGGGGTTAGTAGCCCTTTAATAGTTGACTAAAGACCACGGTTGTGCAAAGTTTAAACTGACAAGACA AACACCGAAGGTGTTGACGAGGACTTTACCAACCTTGTACTATGGGTTGAAATCAGTTACTAAATGTTTTTTCGAGTGCA TTTAACTTTGGAAAGAATCAGGAAGAATCAGATTCTATATGTTTCTTCTTTATCACATGTTTCCAGTAACTATCATGTTT CCCATTTGATTTTCAATTGATTTGTTTATGTACATTGATGATTGAGTCTACTGAAACTATTAATTAATTATGCAAAGGTC ATGTTTTTGTGCTCTCATGGATTTTCTATAGGATGGAGGACCTTATTCCAATCTTGTTGCACTATGTTCGAAGCCGTGAG AAACCTGGGGGATATGTATTGTGGGTTGCTCATAATGCTCGCAGCTTTGATGTACCCTTCTTCATCAATGAGTTAGGTCG TTCTTCTGTCAAGATTCCTAGTAATTGGCTATTTTTGGACACCCTTCCTTTAGGTCGTGAACTAATGATGAAGTTGAAGG CGGAGTCTGAAGGTATTACTATCTTTCTCTCTGTCTCTCTTAAGGACAAAACTTACATAAAGTTCTTTATATATATTTCA TCGAGTTCTTCAACCATAACTGACTTGTGGATAACTTTTTTAAATTCAATCACCGATTCATAACAGAGTCATTTTTTATC AGAAAATAAAAATCCACGTGTCATTATTTGAGCGGCGAATACAAATAACAAAGAACTTGATCTAAGTTTTTTTTTTCCTT CTCTTAACATCACGCACACGCGCTAACAAGTCCTTGCTGTTTTTTTTTTTGTATGAAAGCCTTAACTTTTTACGGTGTCC CAGAGAAAAAACCTCCAGCAAACCTTGCTGCCCTCTGTGAGCACTACAATGTTAAACTAAATGGAGCAGCTCACAGAGCC ATGGTGGATGTGGACGCATTGTCTGTAATCTTTTCCAGGTTGACTTTTGATCTGAAACTGACCCTATCTGACCTTGTCGA AAAATCATTCCAAGAATCAGATATTACCAAGAAGAAGAAGAATTCAGACTAGTTTTCTGACAGTGTTTTTTGCATTCATG TTGTGACAAACATAAATTATTTGTAACAAAAAATGTACTTCTGAAGTTACTTGTAATTGTTAACCTATTATTCTTTAATG AAATCTCATTACCATGCTCAAAATTTTGAAGCTTTTGCACGGGGATACCTATGTGTATCTGGAGCCTTGGATTGGAAGGA AAAGGAGAGGG 

CDS sequence (LotjaGi1g1v0746900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGACTGGATCGATGATTTTTTCGTTATTGCAACTACCTAGATGCAGAATACATAGCTTAGCTAATTATTGGGGTGA AACCTTCCCCAGCTTCAGTAACCCTCAAAATAATTCTAGCATCAGGCTGCTTAGTTCTAGAATCAATGGGCTTCAGGAAG GGCACAGAAAGAAGTGGACTCGAAGACCTATAACTACAAACACAGAAGGCAAGGGGGGCACCAAATCAAGAAGTACCAAG CATGAAATTTTAAGTGAAACTACTTTGACAAGTTCCACAGTAAGTGTAAATAAAACACAGCTAGGTGAATTCCAGGATAT TCAGTACTGTGACGTTAAAGAGATTGCTCAGAAAAAGAACTTGTCTAGCCTAGTCACTGTTATTGCTTTTGATATTGAGA CCACCGGGTTCGGCGCTAAGAATCATAGGATCATTGAGATTGCACTTAGAGACCTTCAGGGTGGTGAAAATAGCACCTTC CAAACTCTTGTAAATCCTCAACGCTATGTTCCTAATTCAGATGTTCACGGCATTACTAATCAGATGGTGAACAGCCCTGA CGTTCCAAGGATGGAGGACCTTATTCCAATCTTGTTGCACTATGTTCGAAGCCGTGAGAAACCTGGGGGATATGTATTGT GGGTTGCTCATAATGCTCGCAGCTTTGATGTACCCTTCTTCATCAATGAGTTAGGTCGTTCTTCTGTCAAGATTCCTAGT AATTGGCTATTTTTGGACACCCTTCCTTTAGGTCGTGAACTAATGATGAAGTTGAAGGCGGAGTCTGAAGCCTTAACTTT TTACGGTGTCCCAGAGAAAAAACCTCCAGCAAACCTTGCTGCCCTCTGTGAGCACTACAATGTTAAACTAAATGGAGCAG CTCACAGAGCCATGGTGGATGTGGACGCATTGTCTGTAATCTTTTCCAGGTTGACTTTTGATCTGAAACTGACCCTATCT GACCTTGTCGAAAAATCATTCCAAGAATCAGATATTACCAAGAAGAAGAAGAATTCAGACTAG 

Protein sequence (LotjaGi1g1v0746900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKTGSMIFSLLQLPRCRIHSLANYWGETFPSFSNPQNNSSIRLLSSRINGLQEGHRKKWTRRPITTNTEGKGGTKSRSTK HEILSETTLTSSTVSVNKTQLGEFQDIQYCDVKEIAQKKNLSSLVTVIAFDIETTGFGAKNHRIIEIALRDLQGGENSTF QTLVNPQRYVPNSDVHGITNQMVNSPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPS NWLFLDTLPLGRELMMKLKAESEALTFYGVPEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIFSRLTFDLKLTLS DLVEKSFQESDITKKKKNSD 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 3 337 335 9.7E-98
PANTHER 3 337 335 9.7E-98
MobiDBLite 54 80 27 -
SUPERFAMILY 124 316 193 1.1E-35
Gene3D 125 327 203 8.6E-40
SMART 126 317 192 1.9E-33
CDD 128 308 181 7.9391E-37
Pfam 128 304 177 6.4E-18

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0746900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…