Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0746900 |
Transcript ID | LotjaGi1g1v0746900.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNA polymerase III polC-type; TAIR: AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q682U6|DPD1_ARATH Exonuclease DPD1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7KWH7|G7KWH7_MEDTR DNA polymerase III, epsilon subunit-like protein; Found in the gene: LotjaGi1g1v0746900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131987914..131991814) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTTCAAATTAATCAAATATTGAATACCTCATAAATCAAAATCACTATTTCCAACACACATTTTGTTAGATTGGGTGA ACGTGCAAGATGAAGGGAAGAGAAGTTGAGTGCAGTTGAAGTGAAAAAAGGGGCGATCCGCAACTTACGTTGTTGAACGG AGCACGCTCCCAATGTTCTGTCCCAACTTCTTCTCTCTGTCATTCTATAACTACCCATTATCGTCCAAATGCTTTTCTTC TCAGTTTCATTCACATCCTCCTTCAGGTAACTTCTCATTCTTCTCTGTTTCAATCTTTTCTTCCTGTATTGTTTTCATAC ATTTCCGGGAAAACCCAGTTATAATTTGATTGAAACAGGTCGCATTTTGTTCCATGCCGTCATGCCCATATGTTGTTTGG ATAAATGATGTAACAAAATCCCGCAAATGTGTTGTGTTGACCTTTTTGTTTGCTCGCTTAGGATTAGGATACTTTGAGGT TGGGATTTCATTGGAAAAACAGTGTTTGTTTGTGTGTGTGCAAGTTGAAGATTGTGAAAAGCTGGTTCATGGAATGTGAT TAGTGTACTATTTACATCTCATGAATCCCTTTTAGATTGGTTGATTTGTTTGCATAATATGGGTTAAATTTTGTTAAAAT GTAAGCTTTCTGTTCAGTGTTTGTTGTAGAGTTAACCATTATTGCATCCATTTCAATTATGTGACATAAAAAATCATGAG TGTTACCTTATTGTTGCCACTGCTCTGCATATTGTTTTACAAATTGATGCTGATTTTTAAAGGCAGGGCTGTGATTGTTC TTGTTCAATGAATTTTGTGATGTCAATGATAAACCTGCAGAATTTCTCCCCTTGAAGTTGTGTGCATTTCTTTTAGGCTG GGGGAAATATATATATTGCTTCTACTTTTCAGAGGGTTTTTTTTGCTGGCTCTATATGGAAAAAGCCATATTGTATTGTA ATTCAGCATAGATGTGGTTTCTTACTCAATAGGGTTTCTGCCATTCTTTGTTCTGCTTCAATAAATGATATATTTCATGC TTGTAAGGGGTCTAGTTGTCATTCTTGGTAAGAAAATTTTCTTTTTTGTTTGATATCTTTCTTTATTCTTCATCAATTTG TAAGTTGTGATTACCAGTTATATATTCATGGCTTTCTGTTATGCTGGATTTAGCATTAGAAGATCCTACCTGTATATGAT ACTTCATGCCTGTTAAGGATATTTTTTTTTTTTTCGTTTATCACATTTTTCTTTATTTCACCTTCATTTCAGGTTGTAGC TGTTTGCTAATTTAATAAAGGATTCTTGTAGTTGTTGTTATTGAATTCAGATGAAGACTGGATCGATGATTTTTTCGTTA TTGCAACTACCTAGATGCAGAATACATAGCTTAGCTAATTATTGGGGTGAAACCTTCCCCAGCTTCAGTAACCCTCAAAA TAATTCTAGCATCAGGCTGCTTAGTTCTAGAATCAATGGGCTTCAGGAAGGGCACAGAAAGAAGTGGACTCGAAGACCTA TAACTACAAACACAGAAGGCAAGGGGGGCACCAAATCAAGAAGTACCAAGCATGAAATTTTAAGTGAAACTACTTTGACA AGTTCCACAGTAAGTGTAAATAAAACACAGCTAGGTGAATTCCAGGATATTCAGTACTGTGACGTTAAAGAGATTGCTCA GAAAAAGAACTTGTCTAGCCTAGTCACTGTTATTGCTTTTGATATTGAGACCACCGGGTTCGGCGCTAAGAATCATAGGA TCATTGAGATTGCACTTAGAGACCTTCAGGGTGGTGAAAATAGCACCTTCCAAACTCTTGTAAATCCTCAACGCTATGTT CCTAATTCAGATGTTCACGGCATTACTAATCAGATGGTGAACAGCCCTGACGTTCCAAGGTAACCTATATCTCTCTGGCT CTTGCATATTTTGGTCCTTGAGTTATGCTCGCCTTTGCAAAATATAGTATTCCTCTGTGTCTCTATAGCATAACCTCATC TTATGTGTGGAATTTTATTTGATAAGCCAATGTTAAAAAAAGTTTAAATATTGGAGTGTTTAGGGGTTGCCTGGTACTCC GAATAGTCTCACATCAAAAAGATGTGGGGATACCCTGGAAAATATCCCAAAAAGATTGTAAACATGGGAAGAACACTGGG AGATTGTAAACATGGGAGGGTTTAGGGGTTGCCTGGTACTTTTGTTTTCGTTTTGACCACCATGTTTCCTTAGATATGAT CAATTGTGACCACAATCACTAGTTTACTAGGGGATTTATGAAACATTGAGCTCTTCATTTTTCAATTGTTTTAGTGTGTT TGGTAGACATTAGAACAAGGTTCTTTTCTATGTTTTGTGCATATTAAAAGTAGCACATAACATAAGGTAGGAAAAGTGGT ACATTTCAGTTCTACCTAAAGGGTTGGAACTTGGAACCAGAAAGGATTTGTGTTTTGTTGTGTTCTGTTTGTGTGCCTAA TGCTACCCAAGACTGTATACAAGAGAAACAGCATATATAATATCTTCTCACATTCATTTATTGAAAATGCCTTTCTTCGG AGTGTTTTTGGGTGGTTATGGGTAGAATTTTCCTCAAGTGGATAACTGGTTGTTCGGTTCTATATATGGGGGTTAGTAGC CCTTTAATAGTTGACTAAAGACCACGGTTGTGCAAAGTTTAAACTGACAAGACAAACACCGAAGGTGTTGACGAGGACTT TACCAACCTTGTACTATGGGTTGAAATCAGTTACTAAATGTTTTTTCGAGTGCATTTAACTTTGGAAAGAATCAGGAAGA ATCAGATTCTATATGTTTCTTCTTTATCACATGTTTCCAGTAACTATCATGTTTCCCATTTGATTTTCAATTGATTTGTT TATGTACATTGATGATTGAGTCTACTGAAACTATTAATTAATTATGCAAAGGTCATGTTTTTGTGCTCTCATGGATTTTC TATAGGATGGAGGACCTTATTCCAATCTTGTTGCACTATGTTCGAAGCCGTGAGAAACCTGGGGGATATGTATTGTGGGT TGCTCATAATGCTCGCAGCTTTGATGTACCCTTCTTCATCAATGAGTTAGGTCGTTCTTCTGTCAAGATTCCTAGTAATT GGCTATTTTTGGACACCCTTCCTTTAGGTCGTGAACTAATGATGAAGTTGAAGGCGGAGTCTGAAGGTATTACTATCTTT CTCTCTGTCTCTCTTAAGGACAAAACTTACATAAAGTTCTTTATATATATTTCATCGAGTTCTTCAACCATAACTGACTT GTGGATAACTTTTTTAAATTCAATCACCGATTCATAACAGAGTCATTTTTTATCAGAAAATAAAAATCCACGTGTCATTA TTTGAGCGGCGAATACAAATAACAAAGAACTTGATCTAAGTTTTTTTTTTCCTTCTCTTAACATCACGCACACGCGCTAA CAAGTCCTTGCTGTTTTTTTTTTTGTATGAAAGCCTTAACTTTTTACGGTGTCCCAGAGAAAAAACCTCCAGCAAACCTT GCTGCCCTCTGTGAGCACTACAATGTTAAACTAAATGGAGCAGCTCACAGAGCCATGGTGGATGTGGACGCATTGTCTGT AATCTTTTCCAGGTTGACTTTTGATCTGAAACTGACCCTATCTGACCTTGTCGAAAAATCATTCCAAGAATCAGATATTA CCAAGAAGAAGAAGAATTCAGACTAGTTTTCTGACAGTGTTTTTTGCATTCATGTTGTGACAAACATAAATTATTTGTAA CAAAAAATGTACTTCTGAAGTTACTTGTAATTGTTAACCTATTATTCTTTAATGAAATCTCATTACCATGCTCAAAATTT TGAAGCTTTTGCACGGGGATACCTATGTGTATCTGGAGCCTTGGATTGGAAGGAAAAGGAG
CDS sequence (LotjaGi1g1v0746900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTGGATCGATGATTTTTTCGTTATTGCAACTACCTAGATGCAGAATACATAGCTTAGCTAATTATTGGGGTGA AACCTTCCCCAGCTTCAGTAACCCTCAAAATAATTCTAGCATCAGGCTGCTTAGTTCTAGAATCAATGGGCTTCAGGAAG GGCACAGAAAGAAGTGGACTCGAAGACCTATAACTACAAACACAGAAGGCAAGGGGGGCACCAAATCAAGAAGTACCAAG CATGAAATTTTAAGTGAAACTACTTTGACAAGTTCCACAGTAAGTGTAAATAAAACACAGCTAGGTGAATTCCAGGATAT TCAGTACTGTGACGTTAAAGAGATTGCTCAGAAAAAGAACTTGTCTAGCCTAGTCACTGTTATTGCTTTTGATATTGAGA CCACCGGGTTCGGCGCTAAGAATCATAGGATCATTGAGATTGCACTTAGAGACCTTCAGGGTGGTGAAAATAGCACCTTC CAAACTCTTGTAAATCCTCAACGCTATGTTCCTAATTCAGATGTTCACGGCATTACTAATCAGATGGTGAACAGCCCTGA CGTTCCAAGGATGGAGGACCTTATTCCAATCTTGTTGCACTATGTTCGAAGCCGTGAGAAACCTGGGGGATATGTATTGT GGGTTGCTCATAATGCTCGCAGCTTTGATGTACCCTTCTTCATCAATGAGTTAGGTCGTTCTTCTGTCAAGATTCCTAGT AATTGGCTATTTTTGGACACCCTTCCTTTAGGTCGTGAACTAATGATGAAGTTGAAGGCGGAGTCTGAAGGTATTACTAT CTTTCTCTCTGTCTCTCTTAAGGACAAAACTTACATAAAGTTCTTTATATATATTTCATCGAGTTCTTCAACCATAACTG ACTTGTGGATAACTTTTTTAAATTCAATCACCGATTCATAA
Protein sequence (LotjaGi1g1v0746900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTGSMIFSLLQLPRCRIHSLANYWGETFPSFSNPQNNSSIRLLSSRINGLQEGHRKKWTRRPITTNTEGKGGTKSRSTK HEILSETTLTSSTVSVNKTQLGEFQDIQYCDVKEIAQKKNLSSLVTVIAFDIETTGFGAKNHRIIEIALRDLQGGENSTF QTLVNPQRYVPNSDVHGITNQMVNSPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPS NWLFLDTLPLGRELMMKLKAESEGITIFLSVSLKDKTYIKFFIYISSSSSTITDLWITFLNSITDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 260 | 258 | 6.3E-76 | – | |
PANTHER | 3 | 260 | 258 | 6.3E-76 | – | |
MobiDBLite | 54 | 80 | 27 | - | – | |
SUPERFAMILY | 124 | 256 | 133 | 1.14E-28 | ||
Gene3D | 125 | 284 | 160 | 6.0E-31 | ||
SMART | 126 | 305 | 180 | 5.5E-17 | ||
CDD | 128 | 259 | 132 | 2.90243E-30 | – | |
Pfam | 128 | 259 | 132 | 4.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0746900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…