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IPR013520

Source: InterPro

Description

IPR013520 is a Exonuclease, RNase T/DNA polymerase III.

<p>This entry includes a variety of exonuclease proteins, such as ribonuclease T [[cite:PUB00004421]] and the epsilon subunit of DNA polymerase III. Ribonuclease T is responsible for the end-turnover of tRNA,and removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria, and also exhibits 3' to 5' exonuclease activity.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 41

Transcript Name Description Predicted domains Domain count
Lj0g3v0170659.1
– PREDICTED: RNA exonuclease 4-like [Glycine max] gi|356556710|ref|XP_003546666.1|
Domains
7
Lj0g3v0233439.1
– PREDICTED: oligoribonuclease-like [Cicer arietinum] gi|502098281|ref|XP_004491197.1|
Domains
10
Lj0g3v0255239.1
– PREDICTED: RNA exonuclease 4-like [Glycine max] gi|356549691|ref|XP_003543225.1|
Domains
17
Lj0g3v0255239.2
– PREDICTED: RNA exonuclease 4-like [Glycine max] gi|356542307|ref|XP_003539610.1|
Domains
9
Lj0g3v0277869.1
– PREDICTED: small RNA degrading nuclease 5-like [Glycine max] gi|356552761|ref|XP_003544731.1|
Domains
12
Lj0g3v0277869.2
– PREDICTED: small RNA degrading nuclease 5-like [Glycine max] gi|356552761|ref|XP_003544731.1|
Domains
11
Lj0g3v0277869.3
– PREDICTED: small RNA degrading nuclease 5-like [Glycine max] gi|356552761|ref|XP_003544731.1|
Domains
14
Lj1g3v4694420.1
– PREDICTED: small RNA degrading nuclease 3-like [Glycine max] gi|356563578|ref|XP_003550038.1|
Domains
10
Lj1g3v4766290.1
– DNA polymerase III polC-type [Medicago truncatula] gi|357511765|ref|XP_003626171.1|
Domains
10
Lj1g3v4766290.2
– DNA polymerase III polC-type [Medicago truncatula] gi|357511765|ref|XP_003626171.1|
Domains
10
Lj3g3v0304790.1
– PREDICTED: RNA exonuclease 4-like [Glycine max] gi|356556710|ref|XP_003546666.1|
Domains
12
Lj3g3v0428960.1
– Histone mRNA exonuclease 1 [Zea mays] gi|195621024|gb|ACG32342.1|
Domains
7
Lj3g3v0428960.2
– Histone mRNA exonuclease 1 [Zea mays] gi|195621024|gb|ACG32342.1|
Domains
10
Lj3g3v1896450.1
– ERI1 exoribonuclease [Medicago truncatula] gi|357515343|ref|XP_003627960.1|
Domains
10
Lj4g3v1658750.1
– Exonuclease family protein [Arabidopsis lyrata subsp]. lyrata] gi|297797093|ref|XP_002866431.1|
Domains
9
Lj4g3v2819900.1
– DNA polymerase III polC-type [Medicago truncatula] gi|357519533|ref|XP_003630055.1|
Domains
10
LotjaGi1g1v0055000.1
– Oligoribonuclease; TAIR: AT2G26970.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9ZVE0|ORN_ARATH Oligoribonuclease; TrEMBL-Plants: tr|A0A151U1P3|A0A151U1P3_CAJCA Oligoribonuclease; Found in the gene: LotjaGi1g1v0055000
Domains
12
LotjaGi1g1v0167200.1
– Small RNA degrading nuclease; TAIR: AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5; TrEMBL-Plants: tr|I1LXA9|I1LXA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0167200
Domains
12
LotjaGi1g1v0167200.2
– Small RNA degrading nuclease; TAIR: AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5; TrEMBL-Plants: tr|I1LXA9|I1LXA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0167200
Domains
11
LotjaGi1g1v0167200.3
– Small RNA degrading nuclease; TAIR: AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5; TrEMBL-Plants: tr|I1LXA9|I1LXA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0167200
Domains
11
LotjaGi1g1v0607200.1
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0R0EJ11|A0A0R0EJ11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607200
Domains
15
LotjaGi1g1v0607200.2
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A151QYX1|A0A151QYX1_CAJCA RNA exonuclease 4; Found in the gene: LotjaGi1g1v0607200
Domains
11
LotjaGi1g1v0607200.3
– RNA exonuclease 4; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0S3RW52|A0A0S3RW52_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607200
Domains
14
LotjaGi1g1v0680300.1
– Small RNA degrading nuclease; TAIR: AT5G67240.3 small RNA degrading nuclease 3; Swiss-Prot: sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3; TrEMBL-Plants: tr|I3SLN1|I3SLN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680300
Domains
12
LotjaGi1g1v0746900.1
– DNA polymerase III polC-type; TAIR: AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q682U6|DPD1_ARATH Exonuclease DPD1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TW26|A0A151TW26_CAJCA DNA polymerase III polC-type; Found in the gene: LotjaGi1g1v0746900
Domains
11
LotjaGi1g1v0746900.2
– DNA polymerase III polC-type; TAIR: AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q682U6|DPD1_ARATH Exonuclease DPD1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TW26|A0A151TW26_CAJCA DNA polymerase III polC-type; Found in the gene: LotjaGi1g1v0746900
Domains
11
LotjaGi1g1v0746900.3
– DNA polymerase III polC-type; TAIR: AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q682U6|DPD1_ARATH Exonuclease DPD1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7KWH7|G7KWH7_MEDTR DNA polymerase III, epsilon subunit-like protein; Found in the gene: LotjaGi1g1v0746900
Domains
11
LotjaGi3g1v0024300.1
– RNA exonuclease-like protein; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0B2RL39|A0A0B2RL39_GLYSO RNA exonuclease 4; Found in the gene: LotjaGi3g1v0024300
Domains
14
LotjaGi3g1v0024300.2
– RNA exonuclease-like protein; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0B2RL39|A0A0B2RL39_GLYSO RNA exonuclease 4; Found in the gene: LotjaGi3g1v0024300
Domains
14
LotjaGi3g1v0044500.1
– Polynucleotidyl transferase ribonuclease H-like superfamily protein; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140; TrEMBL-Plants: tr|A0A1J7HBM7|A0A1J7HBM7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0044500
Domains
10
LotjaGi3g1v0044500.2
– Polynucleotidyl transferase ribonuclease H-like superfamily protein; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140; TrEMBL-Plants: tr|A0A1J7HBM7|A0A1J7HBM7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0044500
Domains
12
LotjaGi3g1v0044500.3
– Polynucleotidyl transferase ribonuclease H-like superfamily protein; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140; TrEMBL-Plants: tr|A0A1J7HBM7|A0A1J7HBM7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0044500
Domains
10
LotjaGi3g1v0155200.1
– RNA exonuclease 4; TAIR: AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q91560|REXO4_XENLA RNA exonuclease 4; TrEMBL-Plants: tr|A0A151R8G2|A0A151R8G2_CAJCA RNA exonuclease 4; Found in the gene: LotjaGi3g1v0155200
Domains
14
LotjaGi3g1v0315800.1
– ERI1 exoribonuclease 2; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2; TrEMBL-Plants: tr|I1M0N0|I1M0N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315800
Domains
11
LotjaGi3g1v0315800.2
– ERI1 exoribonuclease 2; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2; TrEMBL-Plants: tr|I1M0N0|I1M0N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315800
Domains
11
LotjaGi3g1v0315800.3
– ERI1 exoribonuclease 2; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2; TrEMBL-Plants: tr|I1M0N0|I1M0N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315800
Domains
11
LotjaGi3g1v0315800.4
– ERI1 exoribonuclease 2; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2; TrEMBL-Plants: tr|I1M0N0|I1M0N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315800
Domains
11
LotjaGi4g1v0250800.1
– APOLLO; TAIR: AT5G61390.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q0V842|NEN2_ARATH Protein NEN2; TrEMBL-Plants: tr|A0A072URH4|A0A072URH4_MEDTR Ribonuclease H superfamily polynucleotidyl transferase; Found in the gene: LotjaGi4g1v0250800
Domains
10
LotjaGi4g1v0400200.1
– Exonuclease, DNA polymerase III, epsilon subunit family; TAIR: AT4G39810.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|F4JJ23|NEN4_ARATH Protein NEN4; TrEMBL-Plants: tr|G7LAD2|G7LAD2_MEDTR Ribonuclease H superfamily polynucleotidyl transferase; Found in the gene: LotjaGi4g1v0400200
Domains
11
LotjaGi5g1v0008300.1
– Small RNA degrading nuclease; TAIR: AT5G67240.1 small RNA degrading nuclease 3; Swiss-Prot: sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3; TrEMBL-Plants: tr|I3SLN1|I3SLN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0008300
Domains
12
LotjaGi5g1v0008300.2
– Small RNA degrading nuclease; TAIR: AT5G67240.1 small RNA degrading nuclease 3; Swiss-Prot: sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3; TrEMBL-Plants: tr|I3SLN1|I3SLN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0008300
Domains
12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd06145 CDD 1 2.44