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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0753800 |
Transcript ID | LotjaGi1g1v0753800.6 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pre-mRNA-splicing factor 38B; TAIR: AT5G37370.1 PRP38 family protein; Swiss-Prot: sp|Q8RWB1|SRL1_ARATH Pre-mRNA splicing factor SR-like 1; TrEMBL-Plants: tr|G7KFW5|G7KFW5_MEDTR Pre-mRNA-splicing factor; Found in the gene: LotjaGi1g1v0753800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132687565..132687908) extracted from Lotus japonicus Gifu genome v1.2.
ATCATGGAGATACAGACTTCTGGCAGGCCAATTGGGTCCTTGCTAGAGAAAGTCCTTTGTATGATTATTCTGTCATCCGA TTACTTCAAGGAGCTCTATCGCTTAAAAACATACCATGAAGTTATTGATGAGATCTACAATCAAGTTGATCACGTGGAAC CATGGATGACGGGGAATTGTCGTGGTCCTTCAACTTCTTTCTGTCTTCTTTACAAGTTCTTTACAATGAAGCTCACTGTC AAACAAATGCACGGGCTATTGAAACACCCTGATTCTCCTTACATAAGAGCGGTATGTAGAGGTTCCTGAAAATGTATAGG GAACTTTTCTGGTTAAAGTGGTGA
CDS sequence (LotjaGi1g1v0753800.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATACAGACTTCTGGCAGGCCAATTGGGTCCTTGCTAGAGAAAGTCCTTTGTATGATTATTCTGTCATCCGATTA CTTCAAGGAGCTCTATCGCTTAAAAACATACCATGAAGTTATTGATGAGATCTACAATCAAGTTGATCACGTGGAACCAT GGATGACGGGGAATTGTCGTGGTCCTTCAACTTCTTTCTGTCTTCTTTACAAGTTCTTTACAATGAAGCTCACTGTCAAA CAAATGCACGGGCTATTGAAACACCCTGATTCTCCTTACATAAGAGCGGTATGTAGAGGTTCCTGA
Protein sequence (LotjaGi1g1v0753800.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVK QMHGLLKHPDSPYIRAVCRGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 97 | 97 | 3.1E-65 | – | |
PANTHER | 1 | 97 | 97 | 3.1E-65 | ||
Pfam | 12 | 97 | 86 | 6.2E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0753800.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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