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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0023100 |
| Transcript ID | LotjaGi2g1v0023100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT3G19940.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9LT15|STP10_ARATH Sugar transport protein 10; TrEMBL-Plants: tr|A0A0R0EAF3|A0A0R0EAF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0023100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:8103192..8105789) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGGAGGGGCTTTTGTACCAACTGGAGGAGGAGGGGGAAGACAGTATGAAGGGAAGGTTACAGCTTTCGTGTTGGT CACATGTTTCGTGGCGGCCATGGGAGGTCTTCTCTTTGGTTATGATCTCGGTATCACCGGGGGCGTGACTTCCATGGAAC CATTTTTGATCAAGTTCTTCTCAAGTGTGCATAGACAAATGAAAGATGGATCACACCATGAGAACCAATATTGCAAATTT GACAATGAGCTACTCACGTTGTTCACCTCTTCCTTGTACCTTGCTGCATTGGTTGCCTCTTTCTTTGCTTCCACCACCAC CAGAATGCTTGGACGCAAACCCTCGATGTTTCTAGGGGGTTTGTTTTTCCTTGTTGGTGCCTTGCTCAATGGTTTTGCTC AAAATATTAAAATGCTTATCGCTGGACGTTTATTGCTTGGTTTTGGTGTGGGCTATTCCAATCAGGTAAATAATTTAAAC GTACACACCCAAATTTTCTCTACATTTTATATTTCTCACCATATCTGAACTGAACAATTTAGATCAGACAACTCATGTTT CATTAAGATTGGTGAACAAGCTTGTCTTAAAACTTAAGTCGTCTCATCAAATTCTCAGGTCAGATTCAGTGACTGCATGA ATGGATTTTTAGTAAAATGTTACAACTTGATTAGTGAAACATGAAATGGAATGAGACACGAAATGAGGGTACAGGATTTT AATCCCCTGTATGATGTCTCCTTCGCTATACCACCAATCAAATTGGGCAATATAGATATGAGTATGACAATTATAAATTT ACATGAGTGATTTTTAAATGAGATGGTACAATTTGTTTGGTGCCACAAGAAAGAGTATTTCAAATGGGAATAGAGGCTTT CAAATTTTTTTCTCTCTTTTCTTCTCCTCTTTTCACACTGAGAGTGTCTCTGATGAGGTGAGGTTTTTGCATTCTGCGGA TATCTATAGCATATACCATTTCTAAAGTTTAAATTTTTAAACTAGAAAACAATGTCTTCAGACTAATTAATTTTGTTTTA ATTGTTGTGCAACAGTCTGTTCCTGTGTACTTGTCTGAAATGGCTCCAGCACAGATCAGAGGAGCACTCAACATGGGGTT CCAAATGATGATCACAATTGGTATCCTAATTGCAAACCTTATCAACTATAAAACTTCAAAGCTTGAACATGGATGGAGAA TTTCTCTAGGGGTTGGAGCTGTGCCTGCAATTTTGTTGTGTTTGGGATCTCTTTTCTTGGGTGACACGCCTAACTCCTTG ATTGAAAGAGGGCAGCATGAGAATGCCAAGAAAATGTTGCAAAAGATCCGTGGCACCGTGAATGTTGATGAGGAGTACCA AGATCTTGTTGATGCCAGTGAAGAAGCTAAGAAGGTGGAGCACCCATGGCGAAACATCATGCAGCCAAAATACAGACCAC AACTCACTTTTTGCAGTTTCATTCCATTCTTCCAACAACTCACAGGCATCAATGTCATCATGTTCTATGCACCTGTCCTC TTCAAGACTTTGGGCTTTGGCAGTGACGCTTCCCTCATGTCTGCAGTTATCACCGGAGGTGTCAATGTAGTTGCCACATT AGTTTCCATCTTCACTGTTGACAAGTTTGGAAGAAGGATCTTGTTCCTTGAAGGTGGTGCCCAAATGCTTGTTTGCCAGG TGAAAACACAATTCAATTTTTGAAATGACCAGTTACATATATCATTTTAACATGAAATCTCAGTGTCTAATTCTAAGTTC CACTAATAAATTTTACATGCCAATTAAAAATTACAAAGTTTGCAACTATTTAATTGAGGTGACAAACTTCTATTAGTCAG ACAGGAAATTGGACACTTATTGAGTGCAGGAGATCTTGACCCTGAGCCTGAATCAATAGGACTGAAATCATCTGTCCTCA TTTGTTATCTCATTTCATGTCCTAGTCCTACCAATTAAATTATGTCATGTGACACACAATCCAGCCAATTGCTTTTTGTA AATTTTCATAACTTCACTGATACAATTTCACACTAAATAGGGACAGAAGACTAATAAATATATTTTTTCCCTTATTGTTT TGTGAGCATGACTGGTATAAATGTTGAAACTTGAAACTATTACTTGTAGATTGCTGTGGGAGCAATGATTGCTGCAAAGA TTGGACTAAGTGGTGATGGCTCATTCACCAAAGGAGAAGCCAACTTCGTCTTGTTTTTGATATGTGCATATGTTGCTGCA TTTGCTTGGTCCTGGGGCCCATTAGGATGGTTGGTGCCTACTGAAATATGCTCTCTTGAAGCTAGATCTGCAGGGCAAGC TATCAATGTTGCCGTGAACATGTTGTTTACATTTGCAATTGCTCAAGTTTTTCTCTCCATGCTTTGCCATTTGAAGTTTG GCCTCTTCTTCTTCTTTGGTGGCTTTGTCATTGTCATGACTATCTTTATTGCATTGCTCTTGCCTGAGACCAAGAATGTT CCAATTGAAGAAATGAACAGAGTGTGGAAGTCACACTGGTTCTGGGGCAAGTTCATTCCTGATGTCTGATGCGGCTGTCA TTGGTGGATATGAACTCAAGACTTGTCCTTGAAGTTGA
CDS sequence (LotjaGi2g1v0023100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGAGGGGCTTTTGTACCAACTGGAGGAGGAGGGGGAAGACAGTATGAAGGGAAGGTTACAGCTTTCGTGTTGGT CACATGTTTCGTGGCGGCCATGGGAGGTCTTCTCTTTGGTTATGATCTCGGTATCACCGGGGGCGTGACTTCCATGGAAC CATTTTTGATCAAGTTCTTCTCAAGTGTGCATAGACAAATGAAAGATGGATCACACCATGAGAACCAATATTGCAAATTT GACAATGAGCTACTCACGTTGTTCACCTCTTCCTTGTACCTTGCTGCATTGGTTGCCTCTTTCTTTGCTTCCACCACCAC CAGAATGCTTGGACGCAAACCCTCGATGTTTCTAGGGGGTTTGTTTTTCCTTGTTGGTGCCTTGCTCAATGGTTTTGCTC AAAATATTAAAATGCTTATCGCTGGACGTTTATTGCTTGGTTTTGGTGTGGGCTATTCCAATCAGTCTGTTCCTGTGTAC TTGTCTGAAATGGCTCCAGCACAGATCAGAGGAGCACTCAACATGGGGTTCCAAATGATGATCACAATTGGTATCCTAAT TGCAAACCTTATCAACTATAAAACTTCAAAGCTTGAACATGGATGGAGAATTTCTCTAGGGGTTGGAGCTGTGCCTGCAA TTTTGTTGTGTTTGGGATCTCTTTTCTTGGGTGACACGCCTAACTCCTTGATTGAAAGAGGGCAGCATGAGAATGCCAAG AAAATGTTGCAAAAGATCCGTGGCACCGTGAATGTTGATGAGGAGTACCAAGATCTTGTTGATGCCAGTGAAGAAGCTAA GAAGGTGGAGCACCCATGGCGAAACATCATGCAGCCAAAATACAGACCACAACTCACTTTTTGCAGTTTCATTCCATTCT TCCAACAACTCACAGGCATCAATGTCATCATGTTCTATGCACCTGTCCTCTTCAAGACTTTGGGCTTTGGCAGTGACGCT TCCCTCATGTCTGCAGTTATCACCGGAGGTGTCAATGTAGTTGCCACATTAGTTTCCATCTTCACTATTGCTGTGGGAGC AATGATTGCTGCAAAGATTGGACTAAGTGGTGATGGCTCATTCACCAAAGGAGAAGCCAACTTCGTCTTGTTTTTGATAT GTGCATATGTTGCTGCATTTGCTTGGTCCTGGGGCCCATTAGGATGGTTGGTGCCTACTGAAATATGCTCTCTTGAAGCT AGATCTGCAGGGCAAGCTATCAATGTTGCCGTGAACATGTTGTTTACATTTGCAATTGCTCAAGTTTTTCTCTCCATGCT TTGCCATTTGAAGTTTGGCCTCTTCTTCTTCTTTGGTGGCTTTGTCATTGTCATGACTATCTTTATTGCATTGCTCTTGC CTGAGACCAAGAATGTTCCAATTGAAGAAATGAACAGAGTGTGGAAGTCACACTGGTTCTGGGGCAAGTTCATTCCTGAT GTCTGA
Protein sequence (LotjaGi2g1v0023100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGAFVPTGGGGGRQYEGKVTAFVLVTCFVAAMGGLLFGYDLGITGGVTSMEPFLIKFFSSVHRQMKDGSHHENQYCKF DNELLTLFTSSLYLAALVASFFASTTTRMLGRKPSMFLGGLFFLVGALLNGFAQNIKMLIAGRLLLGFGVGYSNQSVPVY LSEMAPAQIRGALNMGFQMMITIGILIANLINYKTSKLEHGWRISLGVGAVPAILLCLGSLFLGDTPNSLIERGQHENAK KMLQKIRGTVNVDEEYQDLVDASEEAKKVEHPWRNIMQPKYRPQLTFCSFIPFFQQLTGINVIMFYAPVLFKTLGFGSDA SLMSAVITGGVNVVATLVSIFTIAVGAMIAAKIGLSGDGSFTKGEANFVLFLICAYVAAFAWSWGPLGWLVPTEICSLEA RSAGQAINVAVNMLFTFAIAQVFLSMLCHLKFGLFFFFGGFVIVMTIFIALLLPETKNVPIEEMNRVWKSHWFWGKFIPD V
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 5 | 343 | 339 | 3.6E-234 | – | |
| PANTHER | 5 | 343 | 339 | 3.6E-234 | – | |
| Gene3D | 17 | 471 | 455 | 1.3E-113 | – | |
| TIGRFAM | 19 | 464 | 446 | 1.5E-103 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 21 | 41 | 21 | - | – | |
| SUPERFAMILY | 23 | 465 | 443 | 1.44E-51 | ||
| ProSiteProfiles | 28 | 457 | 430 | 37.388 | ||
| Pfam | 29 | 468 | 440 | 7.9E-111 | ||
| CDD | 31 | 455 | 425 | 4.91088E-178 | – | |
| PRINTS | 36 | 46 | 11 | 8.2E-27 | ||
| Phobius | 42 | 83 | 42 | - | – | |
| Phobius | 84 | 103 | 20 | - | – | |
| TMHMM | 85 | 104 | 20 | - | – | |
| Phobius | 104 | 114 | 11 | - | – | |
| Phobius | 115 | 133 | 19 | - | – | |
| TMHMM | 117 | 136 | 20 | - | – | |
| Phobius | 134 | 138 | 5 | - | – | |
| Phobius | 139 | 161 | 23 | - | – | |
| PRINTS | 140 | 159 | 20 | 8.2E-27 | ||
| TMHMM | 140 | 162 | 23 | - | – | |
| ProSitePatterns | 145 | 170 | 26 | - | ||
| Phobius | 162 | 172 | 11 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 173 | 192 | 20 | - | – | |
| Phobius | 193 | 203 | 11 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 204 | 223 | 20 | - | – | |
| Phobius | 224 | 284 | 61 | - | – | |
| Phobius | 285 | 311 | 27 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| PRINTS | 295 | 305 | 11 | 8.2E-27 | ||
| Phobius | 312 | 330 | 19 | - | – | |
| TMHMM | 325 | 347 | 23 | - | – | |
| Phobius | 331 | 355 | 25 | - | – | |
| PANTHER | 346 | 477 | 132 | 3.6E-234 | – | |
| PANTHER | 346 | 477 | 132 | 3.6E-234 | – | |
| Phobius | 356 | 366 | 11 | - | – | |
| Phobius | 367 | 385 | 19 | - | – | |
| TMHMM | 368 | 390 | 23 | - | – | |
| PRINTS | 370 | 391 | 22 | 8.2E-27 | ||
| Phobius | 386 | 404 | 19 | - | – | |
| PRINTS | 393 | 405 | 13 | 8.2E-27 | ||
| Phobius | 405 | 427 | 23 | - | – | |
| TMHMM | 405 | 427 | 23 | - | – | |
| Phobius | 428 | 433 | 6 | - | – | |
| TMHMM | 432 | 454 | 23 | - | – | |
| Phobius | 434 | 453 | 20 | - | – | |
| Phobius | 454 | 481 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0023100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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