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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0081600 |
| Transcript ID | LotjaGi2g1v0081600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | high mobility group; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A1J7HI12|A0A1J7HI12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22253752..22254544) extracted from Lotus japonicus Gifu genome v1.2.
ATGACGGTCAATTTTCAGAAGCCTGCCAAAGTGGAACCAAAGAAGGTTCTGTCTTCTAAGGCATCCAACTCTAAGAGGAA ATCAAAAGATGCTGATGAAGATGGAAAAAAGAAAAAACAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTG GTTTCATGTTCTTTTCTCAAATGGAAAGAGAGGTGCGTTCTATGTTATACATGTTGGCAATGTGATTTTGGGTTTTGTTG TGTGGGTTACTGGTGAGTGTATTCATCACTTCACTTCCGTATAGGTATAGCTATTCTATGTGGCTAGGTTTGTAGGGAAA ATCTTTACGAGGCCAGGTTTTGGATAATCTGAGATCATCCGGCAAACCTTTAGCTACTTTTTTTGATTGACTTTTCAAGT AGGTGTTACATAAATTGAGTTCTCCTTACATATTATTATTATTTTTTTCAAATGACAGAATCTGAAGAAAACTAATCCTG GAATTTCATTTACGGATGTGGGGAGAGTACTTGGAGAGAAATGGAAGAAGATATCAGGTATGGTTTATTGCATGCTGTTT CATTTCATGCAGTTCCAGTGAGAGTCATTATTCTTTCATGATCAGCTCAGAGTTTATTATGTGCTGTGACTAAGTTTTGT ATTTCTTTGCGTGTTGATTGCACAGCGGAGGATAAAGAGCCATATGAGGCAAAAGCCCGTGCTGATAGGAAACGTTACAT GGATGAGATTAGTGGCTACAAGAATCCACAACCCATGAATGTTGATTCAGGAAATGAATCTGACAGTGCCTAA
CDS sequence (LotjaGi2g1v0081600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGTCAATTTTCAGAAGCCTGCCAAAGTGGAACCAAAGAAGGTTCTGTCTTCTAAGGCATCCAACTCTAAGAGGAA ATCAAAAGATGCTGATGAAGATGGAAAAAAGAAAAAACAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTG GTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTGAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGGAGA GTACTTGGAGAGAAATGGAAGAAGATATCAGCGGAGGATAAAGAGCCATATGAGGCAAAAGCCCGTGCTGATAGGAAACG TTACATGGATGAGATTAGTGGCTACAAGAATCCACAACCCATGAATGTTGATTCAGGAAATGAATCTGACAGTGCCTAA
Protein sequence (LotjaGi2g1v0081600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVNFQKPAKVEPKKVLSSKASNSKRKSKDADEDGKKKKQKKKDPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGR VLGEKWKKISAEDKEPYEAKARADRKRYMDEISGYKNPQPMNVDSGNESDSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 55 | 55 | - | – | |
| Gene3D | 16 | 118 | 103 | 2.6E-29 | ||
| PANTHER | 20 | 128 | 109 | 1.9E-32 | – | |
| PANTHER | 20 | 128 | 109 | 1.9E-32 | – | |
| MobiDBLite | 23 | 41 | 19 | - | – | |
| SUPERFAMILY | 35 | 117 | 83 | 3.93E-28 | ||
| SMART | 47 | 117 | 71 | 8.7E-29 | ||
| CDD | 48 | 113 | 66 | 8.21468E-23 | – | |
| ProSiteProfiles | 48 | 116 | 69 | 20.096 | ||
| Pfam | 48 | 116 | 69 | 4.6E-24 | ||
| PRINTS | 63 | 81 | 19 | 8.5E-10 | – | |
| PRINTS | 81 | 100 | 20 | 8.5E-10 | – | |
| MobiDBLite | 90 | 112 | 23 | - | – | |
| MobiDBLite | 90 | 132 | 43 | - | – | |
| PRINTS | 100 | 120 | 21 | 8.5E-10 | – | |
| MobiDBLite | 118 | 132 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0081600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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