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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036910
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We have found 39 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.216s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0070900.1
n.a. High mobility group family; TAIR: AT5G05330.1 HMG-box (high mobility group) DNA-binding family protein; Swiss-Prot: sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7; TrEMBL-Plants: tr|I3T9L0|I3T9L0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0070900 LjG1.1_chr1 10072751 10078178 -
3 domain predictions
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LotjaGi1g1v0205900.1
n.a. High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900 LjG1.1_chr1 44745852 44755994 +
3 domain predictions
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LotjaGi1g1v0205900.2
n.a. High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900 LjG1.1_chr1 44745859 44755839 +
3 domain predictions
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LotjaGi1g1v0205900.3
n.a. High mobility group family; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0205900 LjG1.1_chr1 44747562 44755994 +
3 domain predictions
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LotjaGi1g1v0240800.1
n.a. High mobility group B-like protein; TAIR: AT1G76110.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9; TrEMBL-Plants: tr|I1JSY3|I1JSY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0240800 LjG1.1_chr1 57434305 57438441 +
3 domain predictions
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LotjaGi1g1v0440200.1
n.a. High mobility group protein; TAIR: AT3G51880.2 high mobility group B1; Swiss-Prot: sp|O49595|HMGB1_ARATH High mobility group B protein 1; TrEMBL-Plants: tr|I3T9K0|I3T9K0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0440200 LjG1.1_chr1 93613811 93619258 +
3 domain predictions
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LotjaGi1g1v0553900.1
n.a. High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|G7KWP7|G7KWP7_MEDTR High mobility group B-like protein; Found in the gene: LotjaGi1g1v0553900 LjG1.1_chr1 108585696 108592126 +
3 domain predictions
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LotjaGi1g1v0566800.1
n.a. High mobility group protein; TAIR: AT1G20693.2 high mobility group B2; Swiss-Prot: sp|P26585|HMGL_SOYBN HMG1/2-like protein; TrEMBL-Plants: tr|I3SJI3|I3SJI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0566800 LjG1.1_chr1 109982899 109996743 +
3 domain predictions
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LotjaGi1g1v0589200_LC.2
n.a. high mobility group; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A1J7HI12|A0A1J7HI12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589200_LC LjG1.1_chr1 112948086 112952014 +
3 domain predictions
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LotjaGi1g1v0589200_LC.3
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589200_LC LjG1.1_chr1 112948149 112952001 +
3 domain predictions
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LotjaGi1g1v0737100.1
n.a. High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100 LjG1.1_chr1 131114757 131118038 +
3 domain predictions
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LotjaGi1g1v0737100.3
n.a. High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100 LjG1.1_chr1 131114848 131118000 +
3 domain predictions
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LotjaGi1g1v0737100.4
n.a. High mobility group B-like protein; TAIR: AT1G55650.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|B3DLD3|SOX18_XENTR Transcription factor Sox-18; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi1g1v0737100 LjG1.1_chr1 131116100 131118039 +
3 domain predictions
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LotjaGi2g1v0081600.1
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600 LjG1.1_chr2 22249439 22255186 +
3 domain predictions
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LotjaGi2g1v0081600.4
n.a. high mobility group; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A1J7HI12|A0A1J7HI12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600 LjG1.1_chr2 22253752 22254544 +
3 domain predictions
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LotjaGi2g1v0177600_LC.1
n.a. YABBY protein; TAIR: AT2G45190.2 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q01JG2|YAB5_ORYSI Protein YABBY 5; TrEMBL-Plants: tr|I3T2D1|I3T2D1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0177600_LC LjG1.1_chr2 59759409 59763379 -
3 domain predictions
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LotjaGi2g1v0256800.1
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800 LjG1.1_chr2 72298284 72304237 -
3 domain predictions
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LotjaGi2g1v0256800.3
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|A0A0R0KM01|A0A0R0KM01_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800 LjG1.1_chr2 72298894 72303480 -
3 domain predictions
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LotjaGi2g1v0256800.4
n.a. FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800 LjG1.1_chr2 72298894 72303480 -
3 domain predictions
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LotjaGi2g1v0292000.1
n.a. CRABS CLAW; TAIR: AT1G69180.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q8L925|CRC_ARATH Protein CRABS CLAW; TrEMBL-Plants: tr|A0A0S3T272|A0A0S3T272_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0292000 LjG1.1_chr2 76620469 76622810 +
3 domain predictions
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LotjaGi2g1v0321600.1
n.a. YABBY transcription factor; TAIR: AT1G23420.2 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4; TrEMBL-Plants: tr|A0A0L9US49|A0A0L9US49_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321600 LjG1.1_chr2 79639548 79642234 -
3 domain predictions
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LotjaGi2g1v0355000.1
n.a. High mobility group protein; TAIR: AT1G20693.2 high mobility group B2; Swiss-Prot: sp|O49596|HMGB2_ARATH High mobility group B protein 2; TrEMBL-Plants: tr|A0A1J7FXB8|A0A1J7FXB8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0355000 LjG1.1_chr2 83124239 83127014 -
3 domain predictions
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LotjaGi3g1v0184700.1
n.a. YABBY transcription factor; TAIR: AT1G08465.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2; TrEMBL-Plants: tr|I3S155|I3S155_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0184700 LjG1.1_chr3 25848436 25857875 -
3 domain predictions
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LotjaGi3g1v0207600.1
n.a. YABBY protein; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|I1J7S5|I1J7S5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0207600 LjG1.1_chr3 30575148 30578436 -
3 domain predictions
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LotjaGi3g1v0207600.2
n.a. YABBY protein; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|I1J7S5|I1J7S5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0207600 LjG1.1_chr3 30575459 30578167 -
3 domain predictions
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LotjaGi3g1v0331700.1
n.a. High mobility group family; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10; TrEMBL-Plants: tr|A0A1J7IK62|A0A1J7IK62_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0331700 LjG1.1_chr3 70067235 70075574 -
3 domain predictions
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LotjaGi3g1v0470400.1
n.a. YABBY transcription factor; TAIR: AT1G08465.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2; TrEMBL-Plants: tr|A0A151RB10|A0A151RB10_CAJCA Putative axial regulator YABBY 2; Found in the gene: LotjaGi3g1v0470400 LjG1.1_chr3 88589911 88595719 +
3 domain predictions
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LotjaGi4g1v0024600.1
n.a. High mobility group family protein; TAIR: AT2G34450.1 HMG-box (high mobility group) DNA-binding family protein; Swiss-Prot: sp|O64702|HMG14_ARATH High mobility group B protein 14; TrEMBL-Plants: tr|I3S5Q5|I3S5Q5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0024600 LjG1.1_chr4 3051340 3055398 -
3 domain predictions
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LotjaGi4g1v0209200.1
n.a. YABBY protein; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|I3T6R2|I3T6R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0209200 LjG1.1_chr4 48602055 48605684 -
3 domain predictions
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LotjaGi4g1v0209200.2
n.a. YABBY transcription factor; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|D3GBU9|D3GBU9_LOTJA YABBY1 protein; Found in the gene: LotjaGi4g1v0209200 LjG1.1_chr4 48602059 48605978 -
3 domain predictions
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LotjaGi4g1v0209200.3
n.a. YABBY protein; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|D3GBU9|D3GBU9_LOTJA YABBY1 protein; Found in the gene: LotjaGi4g1v0209200 LjG1.1_chr4 48602083 48605883 -
3 domain predictions
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LotjaGi4g1v0272300.1
n.a. YABBY transcription factor; TAIR: AT2G26580.1 plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5; TrEMBL-Plants: tr|C6SYG8|C6SYG8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0272300 LjG1.1_chr4 63958920 63963211 -
3 domain predictions
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LotjaGi4g1v0433300.1
n.a. High mobility group family protein; TAIR: AT4G11080.1 HMG (high mobility group) box protein; Swiss-Prot: sp|Q9T012|HMG13_ARATH High mobility group B protein 13; TrEMBL-Plants: tr|A0A0L9TH42|A0A0L9TH42_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0433300 LjG1.1_chr4 80757105 80760237 +
3 domain predictions
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LotjaGi5g1v0231300.1
n.a. High mobility group B-like protein; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi5g1v0231300 LjG1.1_chr5 53871614 53874542 +
3 domain predictions
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LotjaGi5g1v0231300.2
n.a. High mobility group B-like protein; TAIR: AT3G13350.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10; TrEMBL-Plants: tr|A0A0B2QUC4|A0A0B2QUC4_GLYSO High mobility group B protein 10; Found in the gene: LotjaGi5g1v0231300 LjG1.1_chr5 53871614 53874542 +
3 domain predictions
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LotjaGi5g1v0354800.1
n.a. High mobility group protein; TAIR: AT5G23420.1 high-mobility group box 6; Swiss-Prot: sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7; TrEMBL-Plants: tr|I3SCF2|I3SCF2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0354800 LjG1.1_chr5 67025085 67030183 +
3 domain predictions
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LotjaGi5g1v0361200.1
n.a. High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200 LjG1.1_chr5 67525860 67531259 -
3 domain predictions
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LotjaGi5g1v0361200.2
n.a. High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200 LjG1.1_chr5 67525860 67531467 -
3 domain predictions
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LotjaGi5g1v0361200.3
n.a. High mobility group family protein; TAIR: AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15; TrEMBL-Plants: tr|K7LM49|K7LM49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0361200 LjG1.1_chr5 67526221 67531124 -
3 domain predictions
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