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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0246900 |
Transcript ID | LotjaGi2g1v0246900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | CASP-like protein; TAIR: AT2G36330.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|O24088|N24_MEDTR CASP-like protein N24; TrEMBL-Plants: tr|I3S1N8|I3S1N8_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0246900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71238013..71242454) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAAATAGTTTTGCACACCACTTAATACAAACCAAACATCAAGAGGTAAAACAGTTCAACTAAATAAGATCATTTGA TTCTAGCTAAGATACATAACTAAAATAAATTTATTATCAGAACATATAGCAACTAGCAAGAGTGTTTTTTTAATCTTTTA TTTTAATATTATTTTGGTCTCTTCAAGTAGTATATATAAAACTAACTAATTGATAAAGCAGCATGCATTTTTAGCAGTGT TGATTTTGCTCAAAGTGGAAATCAAACAAACTGCTTGAGTGCTTCTAGTTCCAAAAAATTTGAATATGAGTAATAATGAT CAAAGCCTAGCTCAAGCCATGAAAGAGGAGTCAGAAGAAAAAGCCAAGGATGCTGCAGAGGAGACAAAAGTAGAAGAAGG CTTGAAGAAAAAAGAGGACACGGATCCTGAAACGGGCACAGAAGGTGGGGATGGTGGTGGCGGCGATGATGGCAGTGTAT CGGGTTTCTTGATGTCGAAGAAAGAGGAGAAGTGGTGCAGGGCTTTGTTGGGGGTGAGGATTTCTGCTTTTGTTTTGTGT CTGATTTCTTTCACAGTGATGGCTGCAGATAAGGTAGAGGGTGTTGTTATAGAGTCAATGGACTTGTTCGGCAACTTTTT TTCCACTGAAGAGCCATACTCATTCCGCTGGTATGATTACAAAGAATTCAAGTATGTTGCTCTCTACCTCCTTCTTTTTT AAGCTTTACACAGTTGGTAGATAGCTCGATCTTTTAAGCATGCTAATAAGAGTTTGGGTTGGATTATGCAGATATAGCCT CGCAGTAAATGTGATTGGGTTTGTGTATTCTGGGCTGCAAATATGTGATCTGGTGAAGTACTTGATCACCAAAAAACACA CCCTAAACCTCAGGATAAGGGGTTACTTCAGTGTTGCTATGGATCAGGTAAAGAAAAAGAGTGACTAGCTGAATTTGTCC CTGAAAGTGTAAGCGTCACATAAGTTAGTCCATAGAAGAATGAAATATCCCTTGCAGTCACTGAATGTGTAAATTGTCAG TGAAGTTAGTCCTTAAATCACTGGACCAACTTGACTGACATTCAACACCATCAGTTACTTCCGATGATATTTTCTACTTC TAGGGACTAACTTGTCTAACACCTGATCTTTCAGAGACGAATTTAATGATTCACTCAGAGAAAAAAGAACATGTATCAAC ATCATCATTGTTAATAGTGATTAATGTCTTCAGTTTTGAAGTTAAATAAATCTCCTATATGGATCATAGATGTTTTAACT GCAGGGCTTTGCATATCTACTAATGTCAGCATCATCCTCAGCCGCAAGTACAATCCATATTTCCAGAAGCTATTGGGTTG GTGAAGGTGTACACAAATTCACAGACATGGCAAGTGCATCCATTGCTTTGTCCTTCCTTGCATTCCTGGCTTTTGCCTCA GCCTCTATTGTCTCCGGTTTAATGCTTAGGTTCAACTAGTTTATGCAGCTAGGATAACACTCATTAGTATAATAAGCAAT TTGAAACTTTTGCACCGATGTATAGGATGCAACTAAGTTTCCCTCCCTCTATCTTGTCTTTTTGTGATTTCTAGTCTTCT TTCTCTTCTCACATATTCAGACAATTAACAAGTTGTCTTGTTTTAAATATCACAATTCATGCAGCACACTTGGTCTTTAT GCCTGAGATGGATAATGAATTAATCAATTAATGATTGGTGAAATTTTATCATTTCCGGTGTAGCAAGTGCTCAAGTTTTC AGAAACTGGATTGGTTTCTAAAGGGATTGCCAACTTTTTCAAAGCTTAAAAAAGGGGAAACTACCACGTTTAATTTTACA TGATATTAATATTAACATTATACAAATCTAAACACACAGAAAATTTTGTAAGCTTTTGAACAACATAACATGTCATTGCA TATTAAGTAGCCAGTACATAAACTATATACTAAAGGGTAATTATTAAAAAAATAAGAAACATATCTCTTAAGAGATTTAT TATAATTTATGCAAGGCTAGCACACATACACACATTCCCTCAAATAGCATATTTGCTCAATTGATTATGCTCATGGGATG GGATAAATGACTACTTTTCCAGTGGCCCTGTTAGTGTTGAGGTAGGCAAATGCTTCCACAGCCTGAGAAAATGGAAAGGG GCTCTTAGGATCCAAAATTGGCTTCACCTTCCCACTTTCTAAGTAAGGTTGCAGTTTCTCCAACACAGCACCATCTGAAG TGAGTATGAAAGGAATAGCTGGTGGAGTTCCAGGTGGCAATATTGTCACTACCTTGCCCCCTTCTTTAATAGCCTTCAAT GCCCTCTCACTCTGCCCTGTATATGGAACAAGACATGTCTAACTTTAGTGTTAAACAGTACTAATATTAGTATGTTGATC CGCTCCTCTTTCTTCAAAATCAATTTTGACACAAATCATAGAAGCAGATTTTCCGCTAAATTGATTTTGACTTCAGAATC AATTGTCGAGGATTCATAAACATGCATTATATTTTATATAACATTGAATAAATTCATGCAAAGCATATAAATATTAACAT ATTGGCTCAATCCAAATATCTGACCTACTGCATCGTACACCACATCAAACTTTTCTGAAAGTTCTTCAAAATTCTCTTTT GTATAATCAATAGGCAAGTCTGCTCCCAATTTCTTCAACAATTCTAGTTTGGCAGTACTAGCAGTAGCTGCAACCTTAGA TGCCCCAAAAACATGCTTGGCGAGCTATTACATCAAACAGTCACAGGTCAAATTGTTACCCACATTAGAGTATGAAAAAT TATGCAAAAAATTTTGTGTAAATTGAAGAGGTGCAATAGAGATCAATGTGGTCTGAAGATAACCAATTAAAATAGCAGAA GTGAAATAGCTAAAAAAATTGTACAAGACTGTCTATAATTTAATTGTTAGCACTTGACTTGACAGTTGACACTGAAATGG TGATTGAAGATGTTATGCTATCAAACCTGAATAGCAAGTGTTCCAACTCCTCCAGCACCACCCAGAACAAGTATAGATTT GCCAGCAGAAAATTCAGCAGTTTCAAGTCCTTGATAAGCAGTGATGATGGCTAAAGGGAGGCTAGCAGCTTCAATAAAGT TCAAGTTGGAGGGTTTGTGAGCCAACACTTTCTCTTCAGCAGCCGTGTATTCTACCAAAGTACCACTAGTTTTTGGGTCC AAGGCTTTCTCATTAATATCACCATAGACCTCATCCCCAACCTTAAATTTTTTCACCTGGCTTCCCACTCTGACCACCAC ACCAGCAACATCATACCCTGGCACAGTCTTTTTGACACCAAACAAAAAAATATATTTAAGAATTATAAAACGATATGTAA AGAAGGAAAAACTTATATTGTATATTATGTGCTAAGATGGAAATGGCCTTTAGAACATTAGTAGGAGAGGGTAAAGAGAT TGTTACGGGTAAAGGAGACTCAAAGTCCTTGAAATACCCCAGAGCTCTCTTGTAATCCACAGGATTAAGGGCTGCAGCCA CAACCTTGATGAGCACCTGGTTTTCTTTGATGTCTGGTGTAGGGACATTAGGATCAAATTTGAGAATGTGCTCTATATTC CCATACTCTGAGTACACCCAAGCTTTTGTATGAGATGGAATATTAGGAGTGCTTGCCATGATTGATGAATGAGTATGTCT AGGAGAATAAAAATTTGAGAGTTTAATCTTCAAAGTTGAAAGGGAAAGTGAAGGCTGGTGATGAATACAGATTAAATGGC AATATATAGTGCTTACTTGTATGTTAGTGACGCAATGCATGAAGCAATCTTTTTTAAATCAATCCCAATTTTTAAAACCC TAATTTCTTACTAACTTTTAGTTTCCCATGCATGCGGATGGTTTTTGTGGGTAAGTTCTTGATGTGATGTTACGTCCCGT TTCTTGTACCACGGTCCATTGTTGTCTTGAAATTTTAAAATCAAACAGTTTAGTTACAACAAATGAGTGTCTGACCATAA AAAAAAACAATTGAGTGTCTGGATATGCTTTAATACTCATTATTTTTTTTATGTACATGAAAGATAAATTGTATCCGTCA GAAATTGATCTCTAAATCTTCTCCTACCCAACTCAATGAACTCATATGTCCCCCAGCTCCTATCACTTGAGCTATCCTAC AAAGACACACTAGTACTCATGAATGTTAGCACACATTTTAAAGAAAAAAAGTGAATTAATAGTGTTTTTACAAATTGAGA TAAATGAGTTTTTACGTTAACTCGTATCTAAACAAACATACAATAAATTGAGGTCATTGTATACATGGAGAGGACGAGAA AGATCAAGTTTGTTGGACATGATGGTAATTCTTTCAATGAAGTGTCGCGGACGAATAAAACAATAATATAAGGGAGTCTA ATGTGTGTCATTAAGAAAATTGTAGCATAGTACGCCCCAAAC
CDS sequence (LotjaGi2g1v0246900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAATAATGATCAAAGCCTAGCTCAAGCCATGAAAGAGGAGTCAGAAGAAAAAGCCAAGGATGCTGCAGAGGAGAC AAAAGTAGAAGAAGGCTTGAAGAAAAAAGAGGACACGGATCCTGAAACGGGCACAGAAGGTGGGGATGGTGGTGGCGGCG ATGATGGCAGTGTATCGGGTTTCTTGATGTCGAAGAAAGAGGAGAAGTGGTGCAGGGCTTTGTTGGGGGTGAGGATTTCT GCTTTTGTTTTGTGTCTGATTTCTTTCACAGTGATGGCTGCAGATAAGGTAGAGGGTGTTGTTATAGAGTCAATGGACTT GTTCGGCAACTTTTTTTCCACTGAAGAGCCATACTCATTCCGCTGGTATGATTACAAAGAATTCAAATATAGCCTCGCAG TAAATGTGATTGGGTTTGTGTATTCTGGGCTGCAAATATGTGATCTGGTGAAGTACTTGATCACCAAAAAACACACCCTA AACCTCAGGATAAGGGGTTACTTCAGTGTTGCTATGGATCAGGGCTTTGCATATCTACTAATGTCAGCATCATCCTCAGC CGCAAGTACAATCCATATTTCCAGAAGCTATTGGGTTGGTGAAGGTGTACACAAATTCACAGACATGGCAAGTGCATCCA TTGCTTTGTCCTTCCTTGCATTCCTGGCTTTTGCCTCAGCCTCTATTGTCTCCGGTTTAATGCTTAGGTTCAACTAG
Protein sequence (LotjaGi2g1v0246900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNNDQSLAQAMKEESEEKAKDAAEETKVEEGLKKKEDTDPETGTEGGDGGGGDDGSVSGFLMSKKEEKWCRALLGVRIS AFVLCLISFTVMAADKVEGVVIESMDLFGNFFSTEEPYSFRWYDYKEFKYSLAVNVIGFVYSGLQICDLVKYLITKKHTL NLRIRGYFSVAMDQGFAYLLMSASSSAASTIHISRSYWVGEGVHKFTDMASASIALSFLAFLAFASASIVSGLMLRFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 57 | 57 | - | – | |
Phobius | 1 | 72 | 72 | - | – | |
PANTHER | 7 | 235 | 229 | 7.3E-73 | – | |
PANTHER | 7 | 235 | 229 | 7.3E-73 | – | |
MobiDBLite | 11 | 43 | 33 | - | – | |
Pfam | 69 | 223 | 155 | 5.7E-31 | ||
Phobius | 73 | 94 | 22 | - | – | |
TMHMM | 74 | 93 | 20 | - | – | |
Phobius | 95 | 131 | 37 | - | – | |
Phobius | 132 | 154 | 23 | - | – | |
TMHMM | 132 | 154 | 23 | - | – | |
Phobius | 155 | 174 | 20 | - | – | |
TMHMM | 175 | 193 | 19 | - | – | |
Phobius | 175 | 194 | 20 | - | – | |
Phobius | 195 | 213 | 19 | - | – | |
TMHMM | 213 | 235 | 23 | - | – | |
Phobius | 214 | 235 | 22 | - | – | |
Phobius | 236 | 238 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0246900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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