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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006702
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 104 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 7.501s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0054369.1
n.a. PREDICTED: CASP-like protein 9-like [Glycine max] gi|356556491|ref|XP_003546558.1| chr0 17397019 17398407 -
2 domain predictions
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Lj0g3v0065809.1
n.a. PREDICTED: CASP-like protein At3g53850-like [Glycine max] gi|356504242|ref|XP_003520906.1| chr0 22989874 22992637 +
2 domain predictions
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Lj0g3v0070029.1
n.a. PREDICTED: casparian strip membrane protein 1-like [Cicer arietinum] gi|502178620|ref|XP_004516297.1| chr0 25467629 25468822 -
2 domain predictions
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Lj0g3v0087919.1
n.a. PREDICTED: CASP-like protein 9-like [Glycine max] gi|356556491|ref|XP_003546558.1| chr0 35849253 35850075 -
2 domain predictions
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Lj0g3v0181109.1
n.a. PREDICTED: CASP-like protein 2-like [Cucumis sativus] gi|449451006|ref|XP_004143253.1| chr0 88287162 88289870 +
2 domain predictions
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Lj0g3v0217659.1
n.a. PREDICTED: casparian strip membrane protein 1-like [Cicer arietinum] gi|502178620|ref|XP_004516297.1| chr0 110782073 110783441 -
2 domain predictions
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Lj0g3v0245319.1
n.a. PREDICTED: CASP-like protein At2g38480-like [Glycine max] gi|356566744|ref|XP_003551589.1| chr0 127135201 127136881 -
2 domain predictions
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Lj0g3v0282199.2
n.a. PREDICTED: CASP-like protein At3g23200-like [Glycine max] gi|356534544|ref|XP_003535813.1| chr0 146319945 146323376 -
2 domain predictions
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Lj0g3v0342909.1
n.a. PREDICTED: CASP-like protein 12-like [Cicer arietinum] gi|502102623|ref|XP_004492135.1| chr0 179774021 179775820 +
2 domain predictions
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Lj0g3v0345919.1
n.a. PREDICTED: CASP-like protein 4-like [Cicer arietinum] gi|502111288|ref|XP_004494011.1| chr0 181422042 181424603 -
2 domain predictions
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Lj1g3v0411300.1
n.a. PREDICTED: CASP-like protein At2g36330-like [Cicer arietinum] gi|502133920|ref|XP_004501936.1| chr1 4770633 4772663 -
2 domain predictions
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Lj1g3v2416610.1
n.a. PREDICTED: CASP-like protein At2g38480-like [Glycine max] gi|356566744|ref|XP_003551589.1| chr1 28359614 28361912 +
2 domain predictions
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Lj1g3v2979190.1
n.a. RecName: Full=Casparian strip membrane protein 5] gi|487523307|sp|P0DKC2.1|CASP5_LOTJA chr1 33834998 33836838 +
2 domain predictions
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Lj1g3v3641790.1
n.a. PREDICTED: CASP-like protein At5g40300-like [Glycine max] gi|356558870|ref|XP_003547725.1| chr1 41837180 41840057 +
2 domain predictions
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Lj1g3v3765040.1
n.a. PREDICTED: casparian strip membrane protein 5-like [Glycine max] gi|356574032|ref|XP_003555157.1| chr1 43171238 43172371 -
2 domain predictions
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Lj1g3v3902560.1
n.a. PREDICTED: CASP-like protein RCOM_1446020-like [Cicer arietinum] gi|502106582|ref|XP_004492988.1| chr1 45090435 45091669 +
2 domain predictions
 –
Lj1g3v4765120.3
n.a. nitrate, fromate, iron dehydrogenase [Phaseolus vulgaris] gi|319428661|gb|ADV56684.1| chr1 57472583 57473970 +
2 domain predictions
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Lj2g3v1014120.1
n.a. RecName: Full=CASP-like protein N24; AltName: Full=Nodulin 24; Short=MtN24gi|2598569|emb|CAA75572.1| MtN24 [Medicago truncatula] gi|75098068|sp|O24088.1|N24_MEDTR chr2 15471804 15473246 -
2 domain predictions
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Lj2g3v1014150.1
n.a. RecName: Full=CASP-like protein N24; AltName: Full=Nodulin 24; Short=MtN24gi|2598569|emb|CAA75572.1| MtN24 [Medicago truncatula] gi|75098068|sp|O24088.1|N24_MEDTR chr2 15475071 15478719 -
2 domain predictions
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Lj2g3v1277650.1
n.a. PREDICTED: CASP-like protein 1-like [Fragaria vesca subsp]. vesca] gi|470137041|ref|XP_004304287.1| chr2 20398103 20399437 -
2 domain predictions
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Lj2g3v1277660.1
n.a. CASP-like protein 1 [Glycine max] gi|351727415|ref|NP_001236648.1| chr2 20398363 20399988 -
2 domain predictions
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Lj2g3v2496750.1
n.a. PREDICTED: CASP-like protein 10-like [Glycine max] gi|356569822|ref|XP_003553094.1| chr2 34804045 34808081 -
2 domain predictions
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Lj2g3v2772320.1
n.a. PREDICTED: CASP-like protein RCOM_0464280-like [Cicer arietinum] gi|502121376|ref|XP_004497293.1| chr2 36704127 36705919 +
2 domain predictions
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Lj3g3v1203500.1
n.a. casparian strip membrane protein 5 [Glycine max] gi|351725825|ref|NP_001236338.1| chr3 15854071 15855419 +
2 domain predictions
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Lj3g3v2315400.1
n.a. PREDICTED: CASP-like protein POPTRDRAFT_553757-like [Glycine max] gi|356522984|ref|XP_003530122.1| chr3 28317850 28320957 -
2 domain predictions
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Lj3g3v2719910.1
n.a. RecName: Full=CASP-like protein 1] gi|391738050|sp|P0DI58.1|CSPL1_LOTJA chr3 33268636 33270033 -
2 domain predictions
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Lj3g3v3085520.1
n.a. PREDICTED: CASP-like protein At2g28370-like isoform X1 [Cicer arietinum] gi|502145408|ref|XP_004506017.1| chr3 38586029 38588846 +
2 domain predictions
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Lj3g3v3337970.1
n.a. PREDICTED: CASP-like protein Os03g0767900-like [Cicer arietinum] gi|502149090|ref|XP_004507388.1| chr3 40802839 40805095 +
2 domain predictions
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Lj4g3v0451200.1
n.a. CASP-like protein POPTRDRAFT_758901 [Theobroma cacao] gi|508780996|gb|EOY28252.1| chr4 6653810 6660758 +
2 domain predictions
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Lj4g3v0878880.1
n.a. PREDICTED: CASP-like protein Os03g0767900-like [Cicer arietinum] gi|502149090|ref|XP_004507388.1| chr4 13329299 13331069 -
2 domain predictions
 –
Lj4g3v0880220.1
n.a. PREDICTED: CASP-like protein At3g50810-like [Glycine max] gi|356559440|ref|XP_003548007.1| chr4 13380080 13382539 +
2 domain predictions
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Lj4g3v1478260.1
n.a. PREDICTED: CASP-like protein 9-like [Glycine max] gi|356556491|ref|XP_003546558.1| chr4 22640508 22641485 +
2 domain predictions
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Lj4g3v1512520.1
n.a. PREDICTED: CASP-like protein At5g62820-like [Cicer arietinum] gi|502152301|ref|XP_004508862.1| chr4 22804554 22806363 -
2 domain predictions
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Lj4g3v2093590.1
n.a. CASP-like protein 3 [Glycine max] gi|351725485|ref|NP_001237350.1| chr4 28702383 28705103 +
2 domain predictions
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Lj4g3v2371650.1
n.a. CASP-like protein 6 [Glycine max] gi|358248678|ref|NP_001239666.1| chr4 32677020 32678761 -
2 domain predictions
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Lj4g3v2371680.1
n.a. PREDICTED: CASP-like protein 7-like [Cicer arietinum] gi|502151165|ref|XP_004508310.1| chr4 32689540 32693731 +
2 domain predictions
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Lj5g3v0806320.1
n.a. RecName: Full=Casparian strip membrane protein 1] gi|391738014|sp|P0DI55.1|CASP1_LOTJA chr5 11655881 11657061 -
2 domain predictions
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Lj5g3v1145270.1
n.a. PREDICTED: CASP-like protein At3g23200-like [Glycine max] gi|356576462|ref|XP_003556350.1| chr5 18391242 18398870 +
2 domain predictions
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Lj5g3v2234520.1
n.a. PREDICTED: CASP-like protein At2g38480-like [Glycine max] gi|356566744|ref|XP_003551589.1| chr5 32059978 32063285 -
2 domain predictions
 –
Lj5g3v2234520.2
n.a. PREDICTED: CASP-like protein At2g38480-like [Glycine max] gi|356566744|ref|XP_003551589.1| chr5 32059978 32063285 -
2 domain predictions
 –
Lj5g3v2263980.1
n.a. PREDICTED: CASP-like protein RCOM_0464280-like [Cicer arietinum] gi|502121376|ref|XP_004497293.1| chr5 33053279 33055037 +
2 domain predictions
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Lj6g3v0365870.1
n.a. PREDICTED: CASP-like protein 10-like [Glycine max] gi|356569822|ref|XP_003553094.1| chr6 3429447 3432787 -
2 domain predictions
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Lj6g3v1105050.1
n.a. PREDICTED: CASP-like protein 9-like [Glycine max] gi|356556491|ref|XP_003546558.1| chr6 13734445 13735952 +
2 domain predictions
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Lj6g3v1742810.1
n.a. PREDICTED: CASP-like protein GSVIVT00013502001-like [Glycine max] gi|356557971|ref|XP_003547283.1| chr6 19590478 19593109 -
2 domain predictions
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Lj6g3v1918310.1
n.a. PREDICTED: CASP-like protein 7-like [Glycine max] gi|356549065|ref|XP_003542918.1| chr6 21776640 21778576 -
2 domain predictions
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LotjaGi1g1v0075300.1
n.a. CASP-like protein; TAIR: AT3G55390.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9HTK2|CSPLI_POPTR CASP-like protein 4C2; TrEMBL-Plants: tr|V7BA13|V7BA13_PHAVU CASP-like protein; Found in the gene: LotjaGi1g1v0075300 LjG1.1_chr1 10883816 10886057 -
2 domain predictions
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LotjaGi1g1v0075300.2
n.a. CASP-like protein; TAIR: AT3G55390.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|B9HTK2|CSPLI_POPTR CASP-like protein 4C2; TrEMBL-Plants: tr|V7BA13|V7BA13_PHAVU CASP-like protein; Found in the gene: LotjaGi1g1v0075300 LjG1.1_chr1 10884648 10885217 -
2 domain predictions
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LotjaGi1g1v0101000.1
n.a. CASP-like protein; TAIR: AT1G17200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6TCJ2|CSPLA_SOYBN CASP-like protein 2A2; TrEMBL-Plants: tr|I3T3R6|I3T3R6_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0101000 LjG1.1_chr1 15333989 15339446 +
2 domain predictions
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LotjaGi1g1v0181300.1
n.a. CASP-like protein; TAIR: AT2G36330.2 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q84WP5|CSPL8_ARATH CASP-like protein 4A3; TrEMBL-Plants: tr|G7J5H7|G7J5H7_MEDTR CASP-like protein; Found in the gene: LotjaGi1g1v0181300 LjG1.1_chr1 35342610 35345341 -
2 domain predictions
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LotjaGi1g1v0181300.2
n.a. CASP-like protein; TAIR: AT2G36330.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q84WP5|CSPL8_ARATH CASP-like protein 4A3; TrEMBL-Plants: tr|G7J5H7|G7J5H7_MEDTR CASP-like protein; Found in the gene: LotjaGi1g1v0181300 LjG1.1_chr1 35343112 35345375 -
2 domain predictions
 –