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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0250200 |
Transcript ID | LotjaGi2g1v0250200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribonuclease H; TAIR: AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P9WLH4|Y2228_MYCTO Uncharacterized protein MT2287; TrEMBL-Plants: tr|A0A0B2Q0J9|A0A0B2Q0J9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0250200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71603961..71608608) extracted from Lotus japonicus Gifu genome v1.2.
CTGCACTCACACAGTGTCTCGCTCCTGTCTTGTCCTCTCACAACATCACATCACTTTCTGTCTTCGAAACTTTGGCTTTT CAAACTCCAAACTGGGTTTCTCTGATCACTCAGAACGTGATTTTGTAACTGGGTTTGCACACTGTGTAATCTACAACGAT GAACTTCAAATTTTGAGTTATTTTATATAAATTTTGCTGTTTAACTCAACTATGATATCACCCCGTTGTGCTTGCAGTGT TGCAATGGCTGAGGAAAAGGACGCTTTCTTCGTTGTAAAGAAGGGAGATGTTGTTGGCGTTTACAAGTCTTTCAGTGACA TTCAACCTCTACTTGCATCATCTGTATGTCTTTTGTTTTTCAACCTCCTTGATGCAAATTTTTTGTCTTTGGAGTTTTTC TGTAAATGGGTATCAGCTCTTTGTGATGTTGAACCTCTAAATGGTGTCTATACACTGCTAAATTTACATCAAACTTGTGG GGTTGTATACTTGTATTTTTTGTTCTGGGAACCATCATGTCTTTTTCATTGTTTTGGTTACAAATTACAATGGAAGTTGA GTTTCTGCATTTTCCAAGCAGGTACCTGGTGAGACTGTAAGTGTTTACAAAGGGTATTCTTTACCTCAGAAAACTGAGGA GTATCTTGTCTCACATGGGCTCAAGGGAGCTCGTTACTCTATTGGTGCTGCTGATGTGCAGGAGGGGCTGTTTGGAAGGC TTGTTGCTTGTCCTTATCAGGTTCGAGACACTCTTCATTCCTTTATAATATTTGTGGAAATTTCCTTGCACATGGGATCA ATGTCCCTTTTTCTGTCTAAAAGCTTGATAATGTTAACTTGAGCTTTATGTTTCTACTTTTGGTTATCAGCTTACATTTT TTTTTGGGGGGGGGGGACTTCACTTCTAGGATTATGGTTGATTGTAATGCGTATGGTTCATTTGCAATTAGCATTGTTGA TGAAAACTTCTTGAACTATTTTTTAACTTCAAAGCTTAAGCTTAAGCTTTCGCCATTTATCACTCTGGCATGTTAGCAAC TGAAACAAGTTTAACTTCAAGAAGTGATCATATTTCTTTCAGGAACCACATGCTTATGTAGGAACAGCTTCGGTCGTGAA TTCCTCATCAAAGAGCTTGCAAGGTGCCAAGCAATTTAATGCTAGTGTAAGTTATCAACATTGACATATCTCAACCAGGA AATTGCACCTTAGTATTGCCAAATTATCACTCTGGCAAGTTAGCAACTGAAAAAAAAGTTTAACTTAAAGAAGAGATCAA ATTTCTTTCAGGAACCACATGCTTATGTAGGAACAGCTTCGGTTGTGAATTCCTCATCAAGGAGCTTGCAAGGTTTCAAG CAATTTAGTGCTAGTGTAAGTTATCAACATTGACATATCTCAACCTGGAAGTTGCACCTTAATATTCGAAAAAGAAATGC TATTTACTTGTGTAAAATGCACATTTCGAGCTTTACTGTGATCTTCACTGGTAAGTCATGAGTGTTAAATAACATGTTCC TGAGGTCCACCCGTAGCCACCTTGGCCCCCATATTTTGAGAAGCGCTGGACTTCTGTTGTCTGTTGAAGTTAGTGGGATG TCAGCAGGTCCCTTTTTAACTTTTGAATAGATCCAAGTTAGTATTGTCAGTGCTGTGGTCTTACTCTCGTACAGTTTAGG CAGTTGAAGGTGTGTTTTTCATTGTTTATTATTGGTTTGTTTTACCTTTTTTTGTTTCTTGAGCAGGAGGTGCCAGGGTC ATCTACATTTTCAAATTTACCGGAGCACCACATAGGCGGTAGTGGATTTCAGGTCGAGCGGCCTACTTGTGTAAGTTGGT TTGTGTTTTTTAAACGTTGCTAATATCATTATACTAGACTACTAGAGTATAGTTTGCAGGTCACTTAATATTGTGTGATG CAGTTGGTAACTGTCCAAGCTCCTTTTCCATTGCCTGATTTTCTTTATCTATGCAGTTATCAGCAAGTGGTTATAAATTT AGAAATTATGGCATCATAAAATTCAAATCCACTACAAAGGCTTGGCTGTCAATATTACCTCTAGTTTAGAGCTTAGACAT TTCCTTGATGATTTTCTGCTATAAGGATGGGTCGGTGACTGTGTGGGACTTATTGTTCATTGTTAAGTTATCGCTGATGC AACTCTTAAATTCCAAGCATCATATTAAATTGTTCAACTCTTAATACATGGATGTGTGCAAGTAGTGGTTCTGTAGCTGA AGGCTGGTGGCTGCACCAGCATCATATTAAATTGTGCTCTGTATTATCTTTCTGTGCTGTTTAATTCAACTGAGTTTCAT TTGTTGTTCAATCTGTTTGGAAAAAATAGTAATTTTTTGAACTTTCATGACATTTATAAGAGAAATTTTTTCCCCTTTTA ACTTTGACATGTGGAAGCACATATGTTGGGTTGGAGGGCTTTTAAACTGGATGGGACGTTTCAGAAATTTTCTTTGAAAT AAATTAATGCATTTGGCCTTCAGATTGAATGCTGAATTTCTTGATTGATTGTCCACCTCTCTTCTTAGCTGGATTATTTG GCATACTTACAACAACAAAATCTTACTTGCAGCTTTCTTGTAGCCTTGAGTTTGATGGTGCTTCCAAAGGAAATCCCGGA CCCGCTGGTGCAGGAGCTGTGCTGCGTGCTGATGATGGGAGCAAGGTGTCTACTGTATGCTACAATTCAACTTGTTATTA TGTTCTTTAAAGAATATTGCTAACTCTTAGGTCTCTTCATAGGTCTATCGGTTGCGTGAAGGAGTTGGCACTCAAACCAA TAATTTTGCTGAATATAGGGGTTTAATTTTAGGATTGAAACATGCCATCAAGGAAGGATACAAGCACATTCAAGTCAAAG GAGACTCCATGCTTGTTTGCAACCAGGTTTGGTGTCTTTTCAGTTTATGCATTATTCTTAATAAGTTCCAATATTGAGAG AGATTTACCAAGGATTTCTCTTCAGATTTTTGTACAACTTTTTATCTAACCAGTTTATCATCTGATGTGATTGCTTTTGC AACAGGTTCAGGGTTTATGGAAAATCAAAAACCAGAATATTGCTTCCTTGTGTAGTGAAGCTAAGGAGCTGAAGAATAAG TTTCTATCATTCAAGATCAATCATATTCCTAGGGTACCAACTTACTCATTTGGTCTAAGTTTTATATTTATTTACAAAAA TGAAGAAGATTTTGGCTAAATTGCCCCCTTCACCCTTATATTAATGCGGAGTGGACAACTCTGGATAAACAAAAGATGAA ATGTTGAAAATAATTTACTAGCATTTGACAATCATTTATATGTCAGTGTTTCTCATGGCTTTTAATTCTCATGCCTACCT ATAAATGAGGCTATGTGATCCAAATGCTTGAGTAGCTAAATTATCTACCATTAAAAATCATTGTTCCAGTTTTAACTTAA CTTTGAGCAGTATTCCTACCAATATTGTTTAAGCTATTTGTATGGTTCCTGGGAGTATTTATGTGGAGTTAAGAACTTAA GATCACTTGCAGCCTCAATTGTTTATATGAATATTTACATGCAGTTCTTACTATTTTATCTTGTTTTTTGGATGACAACT ACCTTAATTTTTGCCTCACTTTTTTGTGATGTTCCAGGAATATAACTCCGAAGCTGATGTTCAAGCTAACTTTGGCATAA GTCTCCGAGGTAAGACCCCAAGGATTTCTAAGTTACCTATACGGTTAACTTTGCTTTCCTGATCAAATGAAAATCCCCTT AGCAAAATGATTTGCAGCCAAATATGATCTTGAAACCTAAAAGCCGCTGTGGTTTGTATGTGGTTTTAACTTTCTCTTCA TATGTTTCCATTTTCTAATTACAATCTACGATAACGCTACCTTTTCTGTTAACAGAAATTTAGGAAGAAAAAATAGTGTA TACAATCTCTTAGCTTTCTATAGTTTTAACTTCATATCTAGATTTGGAACGGGAAAATAATTTTTGTTGGCTCTTCAACT TTTGCAGCTGGTCAAGTTGAAGAAGTTCGTGAGGTTCCTTAATGCATTGACTGACAGTACCAGTTATGGCATGCCCCTTT TGCTTTCAGCAAGTGTAAATTCGGTAGCTGTAACAAAGAAGCAATTTAAATTTCTAACAACATATTTTATGTGACTTTTT TTGTATAGGCAGTTACGCCCTCCCTGCCTTGAATTGGCTTTGCAACTTAGCATATGCTAAGTTGCTAACCATTCTGTTTG TCTAACTCTAGACATGCTAAATAGTGTAGATGCCTAACATTAGCTTTGGGACTTAAACTTGTGCTGTAAAGCTCTCTCTG CAGTAGAGTCTAAAAGTGAGATATTTATCTTAATGGAAAGATTCTTTGGCCTTTAGGCGAGAGACAAAAACTAGTCTTCA CAAAAATACCGGGACAATTATCTTAATGGAGAGATTCTTTTGCCTTTAGGCGAGAGACAAAAACTAGTCTTCACTAAAAA TACCGGGTTAAAAAAATGTATTAAACCCATTTTAGCTTCACCTTAATTTTTTTTACCATGTATTTAAAGATGCATTTATG TTAAGGGAGTTTTACAAATTTAATTATAATAATACCTCCATCTCTTCCTTCTCCCACTAGTTTTTTTTTAATTGGTCGTC CATTGTCA
CDS sequence (LotjaGi2g1v0250200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGGAAAAGGACGCTTTCTTCGTTGTAAAGAAGGGAGATGTTGTTGGCGTTTACAAGTCTTTCAGTGACATTCA ACCTCTACTTGCATCATCTGTACCTGGTGAGACTGTAAGTGTTTACAAAGGGTATTCTTTACCTCAGAAAACTGAGGAGT ATCTTGTCTCACATGGGCTCAAGGGAGCTCGTTACTCTATTGGTGCTGCTGATGTGCAGGAGGGGCTGTTTGGAAGGCTT GTTGCTTGTCCTTATCAGGAACCACATGCTTATGTAGGAACAGCTTCGGTTGTGAATTCCTCATCAAGGAGCTTGCAAGG TTTCAAGCAATTTAGTGCTAGTGAGGTGCCAGGGTCATCTACATTTTCAAATTTACCGGAGCACCACATAGGCGGTAGTG GATTTCAGGTCGAGCGGCCTACTTGTCTTTCTTGTAGCCTTGAGTTTGATGGTGCTTCCAAAGGAAATCCCGGACCCGCT GGTGCAGGAGCTGTGCTGCGTGCTGATGATGGGAGCAAGGTCTATCGGTTGCGTGAAGGAGTTGGCACTCAAACCAATAA TTTTGCTGAATATAGGGGTTTAATTTTAGGATTGAAACATGCCATCAAGGAAGGATACAAGCACATTCAAGTCAAAGGAG ACTCCATGCTTGTTTGCAACCAGGTTCAGGGTTTATGGAAAATCAAAAACCAGAATATTGCTTCCTTGTGTAGTGAAGCT AAGGAGCTGAAGAATAAGTTTCTATCATTCAAGATCAATCATATTCCTAGGGAATATAACTCCGAAGCTGATGTTCAAGC TAACTTTGGCATAAGTCTCCGAGCTGGTCAAGTTGAAGAAGTTCGTGAGGTTCCTTAA
Protein sequence (LotjaGi2g1v0250200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEKDAFFVVKKGDVVGVYKSFSDIQPLLASSVPGETVSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGRL VACPYQEPHAYVGTASVVNSSSRSLQGFKQFSASEVPGSSTFSNLPEHHIGGSGFQVERPTCLSCSLEFDGASKGNPGPA GAGAVLRADDGSKVYRLREGVGTQTNNFAEYRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEA KELKNKFLSFKINHIPREYNSEADVQANFGISLRAGQVEEVREVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 282 | 277 | 5.4E-108 | – | |
PANTHER | 6 | 282 | 277 | 5.4E-108 | – | |
ProSiteProfiles | 141 | 272 | 132 | 14.659 | ||
SUPERFAMILY | 146 | 268 | 123 | 2.4E-29 | ||
Gene3D | 146 | 283 | 138 | 1.6E-36 | ||
CDD | 147 | 272 | 126 | 2.92993E-51 | – | |
Pfam | 149 | 269 | 121 | 3.3E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0250200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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