Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0274200 |
| Transcript ID | LotjaGi2g1v0274200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G25750.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470; TrEMBL-Plants: tr|K7LDB6|K7LDB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74604964..74608569) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACTATAATACACAACTTTCAGACCAAAAAATAATAATAATAATAATAATAATAATAATAAGAAATAATAAATAAA TTGCCCAAAAAAAAAAACAAATAACAAAAAAAAGGTTCTTTGTATTCAGAACGTTTCTGCTTCCGCTTACTTGTGAGCTT TTCTTTTGCATGTGCCAGGTTTGCGATTATTCATCTCTCGCTTGGTTTTTCCATTTCCTTGAAGATTTTCCCCAAAAGGT TTAATTTTGTTGATGGGTTTTTCAGTTTATGCATTTTTCTCTACTTGTTCTTACCCACAAGTGTTTTCTGTAAAAAAATT GGAACTTGTTTGCTTTCCGAGTTTGCGAGTGAACATTTGCAGTTCTTTATTGTATTAGCATTCTTAGGTTGAGTTGTGGA AAGTGGAAAACTGAAATTTCAACATGATCAATACCTGAATCAGATTGTCTCAGACAAGTTGTATACATTTGATTCATGTT ATTTGTGTTTTTGGCATTTGGCATTACTATTTTATTAGATTTAGACTAGTTTTTTAACCATATGAGTACTACTGGTTTAT AAATAGCATGTTTGATGACCAATATTGGCATCAGTTTATTGTTATTATGAGTACAATGGCCCTGTATTGTGGTAAACAAA ACAACCATTGACAGAATAATTGATTACTTAGAATGTATTAAGTTAATGCACTAGGTGGTAGCCCTTGTATAAGTTTTACC CCCCTTTTTGATGAATTGGATGATAATTGATAACTTTATGATACTTTCTGCATCATTTTGTTCAAGGATTCTAGAAAATG CAAATAGGTTACCAAATTTACAAATGTTTTGAGCCGGGTTATTATCTATCAATTGCAGCTGAATGTCACTACCAAACTCA AGTCGTGGAGCACTTTTACGTTGAGCTGCAATTAGCAGCCAAAGTTGCTTCGTTTCATGGATATTTGCACTAACCCCATT TCCTGACTTTTCCTATCCTAAATTTTTGTTTTCCTCATTTGTTAGACATATTTGGCATAAGAACCAATTCCCCTCATTCA TTTCTGACCATCATTCACATTTGTACTATGCATGTATGTATTCATCTTGTCCACCCTCAGGAGCTCATGCCTACTGATTG TGGGCAGTTTATTCAGCCATTGAAACCATTACTTGTCACTGGTGGCCCTGGGCACCTTCAATCTCCCCCATACTCTTTCT TTCCTGTCTGGTGCTTACTCTCTGTTCAAACAACCTCTGTGTGCATTTATCAGCTCTGTTATATATTTTTTTTCTTTATT TTATTTGTGGTTTGGCACTCAAGCTTTCACTGTTCTAGATGATGACTTACTAACTTGGAACATGTCTTTTAAGGCCGGCC AGCTGGCTGTCTGCTTCACACTGCTGTGTGGAATTGCTAATTAATGTCTTGAATCTTGAGTGATGTATCAAATAGCTTTT AGGAAAATAGCATGTGACATTGTGATGATGGACTAAAAAGAATAGAATATCCAAGATGTTGTAAATTGAAGTTTGCCAGG AGTTAGTCTTGGTTCAGATAACCATGGTTGCTAAAAGTTAATGACATTATATATCATTCTTCTAATCTAAATAGTTTATT GGTTTCCCTAACACTCATGTACTCATGAGTATTTGTTTTATAAATTGATTTTCTTATGGTTAGTTAGTATACTTCCTACA TATTTAGATATGTCACTCTTGCTAAATTCATTGAGATATCTTATATGAAATCGGATCCTTTCTGATTGTTTTATAAGGAC TGGTATAGTGATTATATGTATTAGCACAATCGTTAATTTTATGGAAAAATAATGATATTTAACCGAAGCTCAGTGTATTT CCAAATCCATTAAGCTTGGTAAAAGCTTCCATCCTAAGAAAACTGTTAAGCCTGACTAGCTGATCTTAATCTTTGCATTG TATATTTGATGCATCATCCATATCATGCAGGATGCGTCCATTTCTGCTGGAAGCTATCGTCAGAAGAAGTGTTGCCAAAA GGATGAAAATAAGAAATAGAAAAAGAAAATTGAAAAGGGGATATGCAGGTGGTTCAAGTACCCCTTATTTTCTGTTGGAA GCTATCAAGAGAAGGTTTATTGCCAAACGCAGAAAAACAAGATATGGCAGAAAAAGAGAATTGGAAAATAAGTACTATGT AGATTGGTCCAGTCTCCCTCAGGGTGTACTTGAGATGGTTGCTGAAAAGCTGAGTTTTATTGATTGTTTATCCTTCAGCA AGGTTTGTAGGAGTTGGAATTCTGTTCTTGGTGAAGAACTTCCTAATTGGCAGAGCCAGAGGCATGGGTTTCCTTGGCTT CTGGTATCAGGTCAGCAGAACCAAGAGGTTAGAACTTGTATCAGTATAATGGAGAATCGTATTTGGGAGTTGGAGTTACC AGAGGTGAAAGGAAAATATTGTTGGGGATCATTTCGTGATTGGTTGATATTGGTGAAAAATCTGGATACTTTCCAACTTG AAGTTAACTTGTTGAATCCATTTTCAAGAAGTGAAGTTAGTCTTCCTACAATGTGGAACTTTTACCATAAAATGGTGCTC TCAGGGCTTCCCTCTGAGAATAACTTCATTTGTATGGTTCTACACAGCCAGCACCGGGAGCTGGCGTTTTGGATTCCAGG GGCTCAATCATGGCGTAAACATAAACTAAAAGGTGAACCTTTTGAGGACGCTGTATTATGTAATGGAAGTTTTTATCTCC TGGGTGATGGATTCAACATATGGCAAATTGATGTTAAAAGCATCTACTCTAGCATTAGTCAAGGGGATTCTGAGATAGAA ATGCAGTTTCATGAAGTAAAAGGGCCTGAGATACAGTTCCAAGAAGGGATGCTAGTACAGGGTGATGATAACAGTCGATT TTTAAAATATCTTGTGGAGTTCTCTGGGAAGCTTTTGCTTGTGCATAGGTATTTTAGCAACAAACCAGGTGTGGTACTCG AGACTCGAAAGTTCGAGGTTTATTCATTGGATTATTGTCAGCCATCTTGGAAGAAGGTTGAGGATTTGGGGGATCAAATG ATATTTCTGGGAAAATGCAGTTCAGCATCCTTCTCTGCAAAGGAACTTGGAGTTGGAATTAGCAACAGCATATATTTCTG CAATGATCAAACTGCTCCTTGGTGGAATGAGTGGGATTCTGATCATTTCAAAGGGATATCACTTCGTCTTGGCTTAAATA AGACTGATGGAGGTCATTGGGGAAATTTCAGACTTTACAATATGGATGGTGAGCCGTTTTTCTACCACGGTGATATACAC AGTTGGGCATATACCTGGCTTACTGCACCTTCATGGTGGTGTTACAGAAATGTTCCTGTGATATCAACTAGATAATCTCA TTCCCCTATGTTAGAAATAGATGCAATGTGGACTTATAGTTTTTGTCCTTATTAGGATGTTTGTATTTTGAAAAGCTTAT AATCAATGTTCAAGAGAGCATTTGATTGAAAAGTTGTTGTGTAAAAATTTCAGAAAAATCAGAAGACACATGAGCAGTCA GTGGACTTGGCTTCTTTTGGTATTGCACATCCTCTTATGATATGTCTATTTTGGTAAATTCCTCTTATGATATGTTTGTC ATCGAG
CDS sequence (LotjaGi2g1v0274200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTCCATTTCTGCTGGAAGCTATCGTCAGAAGAAGTGTTGCCAAAAGGATGAAAATAAGAAATAGAAAAAGAAAATT GAAAAGGGGATATGCAGGTGGTTCAAGTACCCCTTATTTTCTGTTGGAAGCTATCAAGAGAAGGTTTATTGCCAAACGCA GAAAAACAAGATATGGCAGAAAAAGAGAATTGGAAAATAAGTACTATGTAGATTGGTCCAGTCTCCCTCAGGGTGTACTT GAGATGGTTGCTGAAAAGCTGAGTTTTATTGATTGTTTATCCTTCAGCAAGGTTTGTAGGAGTTGGAATTCTGTTCTTGG TGAAGAACTTCCTAATTGGCAGAGCCAGAGGCATGGGTTTCCTTGGCTTCTGGTATCAGGTCAGCAGAACCAAGAGGTTA GAACTTGTATCAGTATAATGGAGAATCGTATTTGGGAGTTGGAGTTACCAGAGGTGAAAGGAAAATATTGTTGGGGATCA TTTCGTGATTGGTTGATATTGGTGAAAAATCTGGATACTTTCCAACTTGAAGTTAACTTGTTGAATCCATTTTCAAGAAG TGAAGTTAGTCTTCCTACAATGTGGAACTTTTACCATAAAATGGTGCTCTCAGGGCTTCCCTCTGAGAATAACTTCATTT GTATGGTTCTACACAGCCAGCACCGGGAGCTGGCGTTTTGGATTCCAGGGGCTCAATCATGGCGTAAACATAAACTAAAA GGTGAACCTTTTGAGGACGCTGTATTATGTAATGGAAGTTTTTATCTCCTGGGTGATGGATTCAACATATGGCAAATTGA TGTTAAAAGCATCTACTCTAGCATTAGTCAAGGGGATTCTGAGATAGAAATGCAGTTTCATGAAGTAAAAGGGCCTGAGA TACAGTTCCAAGAAGGGATGCTAGTACAGGGTGATGATAACAGTCGATTTTTAAAATATCTTGTGGAGTTCTCTGGGAAG CTTTTGCTTGTGCATAGGTATTTTAGCAACAAACCAGGTGTGGTACTCGAGACTCGAAAGTTCGAGGTTTATTCATTGGA TTATTGTCAGCCATCTTGGAAGAAGGTTGAGGATTTGGGGGATCAAATGATATTTCTGGGAAAATGCAGTTCAGCATCCT TCTCTGCAAAGGAACTTGGAGTTGGAATTAGCAACAGCATATATTTCTGCAATGATCAAACTGCTCCTTGGTGGAATGAG TGGGATTCTGATCATTTCAAAGGGATATCACTTCGTCTTGGCTTAAATAAGACTGATGGAGGTCATTGGGGAAATTTCAG ACTTTACAATATGGATGGTGAGCCGTTTTTCTACCACGGTGATATACACAGTTGGGCATATACCTGGCTTACTGCACCTT CATGGTGGTGTTACAGAAATGTTCCTGTGATATCAACTAGATAA
Protein sequence (LotjaGi2g1v0274200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPFLLEAIVRRSVAKRMKIRNRKRKLKRGYAGGSSTPYFLLEAIKRRFIAKRRKTRYGRKRELENKYYVDWSSLPQGVL EMVAEKLSFIDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQQNQEVRTCISIMENRIWELELPEVKGKYCWGS FRDWLILVKNLDTFQLEVNLLNPFSRSEVSLPTMWNFYHKMVLSGLPSENNFICMVLHSQHRELAFWIPGAQSWRKHKLK GEPFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQGDSEIEMQFHEVKGPEIQFQEGMLVQGDDNSRFLKYLVEFSGK LLLVHRYFSNKPGVVLETRKFEVYSLDYCQPSWKKVEDLGDQMIFLGKCSSASFSAKELGVGISNSIYFCNDQTAPWWNE WDSDHFKGISLRLGLNKTDGGHWGNFRLYNMDGEPFFYHGDIHSWAYTWLTAPSWWCYRNVPVISTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 64 | 452 | 389 | 1.1E-135 | – | |
| PANTHER | 64 | 452 | 389 | 1.1E-135 | – | |
| ProSiteProfiles | 69 | 116 | 48 | 9.895 | ||
| Gene3D | 71 | 110 | 40 | 8.8E-9 | – | |
| Pfam | 71 | 108 | 38 | 9.7E-8 | ||
| SUPERFAMILY | 71 | 108 | 38 | 3.66E-6 | ||
| SMART | 75 | 115 | 41 | 1.5E-5 | ||
| Pfam | 355 | 401 | 47 | 1.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0274200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…