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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005174
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 55 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.590s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004349.1
n.a. PREDICTED: F-box protein SKIP23-like [Cicer arietinum] gi|502153635|ref|XP_004509411.1| chr0 1552724 1554627 -
2 domain predictions
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Lj0g3v0126749.1
n.a. PREDICTED: F-box protein SKIP23-like [Vitis vinifera] gi|225459789|ref|XP_002284795.1| chr0 57093297 57094433 +
2 domain predictions
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Lj0g3v0127169.1
n.a. F-box family protein [Medicago truncatula] gi|357518861|ref|XP_003629719.1| chr0 57309580 57310353 +
2 domain predictions
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Lj0g3v0272499.1
n.a. PREDICTED: F-box protein SKIP23-like [Cicer arietinum] gi|502093605|ref|XP_004489994.1| chr0 141204592 141205032 -
2 domain predictions
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Lj0g3v0304469.1
n.a. PREDICTED: F-box protein SKIP23-like [Glycine max] gi|356509606|ref|XP_003523538.1| chr0 158590460 158591810 +
2 domain predictions
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Lj0g3v0305389.1
n.a. PREDICTED: F-box protein SKIP23-like [Cicer arietinum] gi|502093568|ref|XP_004489983.1| chr0 159182837 159184185 -
2 domain predictions
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Lj0g3v0319929.1
n.a. F-box family protein [Medicago truncatula] gi|357518861|ref|XP_003629719.1| chr0 166976435 166977589 +
2 domain predictions
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Lj1g3v2313080.1
n.a. F-box protein [Medicago truncatula] gi|358346681|ref|XP_003637394.1| chr1 27250176 27250952 -
2 domain predictions
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Lj1g3v2713890.1
n.a. F-box family protein [Medicago truncatula] gi|357518861|ref|XP_003629719.1| chr1 31312328 31313479 -
2 domain predictions
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Lj1g3v3833860.1
n.a. PREDICTED: F-box protein At2g05970-like [Fragaria vesca subsp]. vesca] gi|470130093|ref|XP_004300940.1| chr1 43456929 43459521 -
2 domain predictions
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Lj1g3v4957820.1
n.a. PREDICTED: F-box protein SKIP23-like [Glycine max] gi|356537282|ref|XP_003537158.1| chr1 60518616 60519280 +
2 domain predictions
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Lj2g3v0691450.1
n.a. PREDICTED: F-box protein SKIP23-like [Cicer arietinum] gi|502093568|ref|XP_004489983.1| chr2 11013179 11014327 +
2 domain predictions
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Lj2g3v0727340.1
n.a. f-box family protein [Populus trichocarpa] gi|224105109|ref|XP_002313690.1| chr2 11507459 11507991 -
2 domain predictions
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Lj2g3v1649220.1
n.a. F-box family protein [Medicago truncatula] gi|357518861|ref|XP_003629719.1| chr2 25805011 25806159 +
2 domain predictions
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Lj2g3v1659380.1
n.a. F-box family protein [Medicago truncatula] gi|357518861|ref|XP_003629719.1| chr2 25833810 25834958 -
2 domain predictions
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Lj2g3v1968270.1
n.a. PREDICTED: F-box protein SKIP23-like [Cicer arietinum] gi|502093568|ref|XP_004489983.1| chr2 28650672 28651583 -
2 domain predictions
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Lj2g3v3319260.1
n.a. F-box family protein [Medicago truncatula] gi|357457833|ref|XP_003599197.1| chr2 42057221 42058240 -
2 domain predictions
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Lj2g3v3319270.1
n.a. F-box family protein [Medicago truncatula] gi|357457833|ref|XP_003599197.1| chr2 42060915 42062084 -
2 domain predictions
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Lj3g3v0828230.1
n.a. PREDICTED: F-box protein SKIP23-like isoform X1 [Cicer arietinum] gi|502127949|ref|XP_004499887.1| chr3 10526652 10528744 -
2 domain predictions
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Lj3g3v0828270.1
n.a. F-box family protein [Medicago truncatula] gi|357457833|ref|XP_003599197.1| chr3 10536482 10538137 -
2 domain predictions
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Lj3g3v1410690.1
n.a. PREDICTED: F-box protein SKIP23-like [Vitis vinifera] gi|225459789|ref|XP_002284795.1| chr3 18229183 18231457 -
2 domain predictions
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Lj3g3v1718910.1
n.a. PREDICTED: F-box protein SKIP23-like [Fragaria vesca subsp]. vesca] gi|470110086|ref|XP_004291318.1| chr3 21714066 21716152 -
2 domain predictions
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Lj3g3v2200270.1
n.a. PREDICTED: F-box protein SKIP23-like isoform X1 [Cicer arietinum] gi|502127949|ref|XP_004499887.1| chr3 27261470 27263710 -
2 domain predictions
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Lj3g3v3243180.1
n.a. F-box family protein [Medicago truncatula] gi|357457833|ref|XP_003599197.1| chr3 40037933 40039558 +
2 domain predictions
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Lj5g3v0024220.1
n.a. PREDICTED: F-box protein SKIP23-like [Fragaria vesca subsp]. vesca] gi|470110086|ref|XP_004291318.1| chr5 54397 55506 +
2 domain predictions
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Lj6g3v0523890.1
n.a. F-box protein [Medicago truncatula] gi|357447429|ref|XP_003593990.1| chr6 5185836 5188245 +
2 domain predictions
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Lj6g3v0927840.1
n.a. Uncharacterized protein TCM_030890 [Theobroma cacao] gi|508720469|gb|EOY12366.1| chr6 10191496 10192602 -
2 domain predictions
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Lj6g3v2044590.1
n.a. PREDICTED: F-box protein SKIP23-like [Cicer arietinum] gi|502093605|ref|XP_004489994.1| chr6 24243191 24244141 -
2 domain predictions
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LotjaGi1g1v0254700_LC.1
n.a. F-box protein; TAIR: AT1G05550.3 hypothetical protein (DUF295); Swiss-Prot: sp|Q8UH62|CYSA1_AGRFC Sulfate/thiosulfate import ATP-binding protein CysA 1; TrEMBL-Plants: tr|A0A1J7GDQ1|A0A1J7GDQ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0254700_LC LjG1.1_chr1 61448187 61448630 +
2 domain predictions
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LotjaGi1g1v0433300_LC.1
n.a. F-box family protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|I1JSY2|I1JSY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0433300_LC LjG1.1_chr1 92810559 92814475 -
2 domain predictions
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LotjaGi1g1v0433500_LC.1
n.a. F-box family protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|I1JSY2|I1JSY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0433500_LC LjG1.1_chr1 92826593 92830607 +
2 domain predictions
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LotjaGi1g1v0433500_LC.2
n.a. F-box family protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|I1JSY2|I1JSY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0433500_LC LjG1.1_chr1 92826988 92830607 +
2 domain predictions
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LotjaGi1g1v0439900.1
n.a. F-box protein; TAIR: AT1G65770.1 ascorbic acid mannose pathway regulator 1; Swiss-Prot: sp|Q9SHX9|FB72_ARATH Putative F-box protein At1g65770; TrEMBL-Plants: tr|G7LIM0|G7LIM0_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0439900 LjG1.1_chr1 93600704 93602122 -
2 domain predictions
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LotjaGi1g1v0535500_LC.1
n.a. F-box protein; TAIR: AT5G53780.1 F-box protein, putative (DUF295); Swiss-Prot: sp|P29919|NQO7_PARDE NADH-quinone oxidoreductase subunit 7; TrEMBL-Plants: tr|A0A1J7GDQ1|A0A1J7GDQ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0535500_LC LjG1.1_chr1 106401320 106406773 -
2 domain predictions
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LotjaGi1g1v0535500_LC.2
n.a. F-box family protein; TAIR: AT1G30170.1 hypothetical protein (DUF295); Swiss-Prot: sp|Q9SIX0|FB106_ARATH Putative F-box protein At2g16290; TrEMBL-Plants: tr|A0A1J7GDQ1|A0A1J7GDQ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0535500_LC LjG1.1_chr1 106401320 106406773 -
2 domain predictions
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LotjaGi1g1v0779300_LC.1
n.a. F-box protein; TAIR: AT2G17036.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q6DR20|FB110_ARATH F-box protein At2g17036; TrEMBL-Plants: tr|M5X314|M5X314_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0779300_LC LjG1.1_chr1 135144834 135146382 +
2 domain predictions
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LotjaGi2g1v0274200.1
n.a. F-box protein; TAIR: AT3G25750.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470; TrEMBL-Plants: tr|K7LDB6|K7LDB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274200 LjG1.1_chr2 74604964 74608569 -
2 domain predictions
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LotjaGi2g1v0274200.2
n.a. F-box protein; TAIR: AT3G25750.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470; TrEMBL-Plants: tr|K7LDB6|K7LDB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274200 LjG1.1_chr2 74604986 74608427 -
2 domain predictions
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LotjaGi2g1v0315500_LC.1
n.a. F-box family protein; TAIR: AT3G25750.2 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q9LS04|FB187_ARATH Putative F-box protein At3g25750; TrEMBL-Plants: tr|A0A1J7GDQ1|A0A1J7GDQ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0315500_LC LjG1.1_chr2 79108642 79110126 -
2 domain predictions
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LotjaGi2g1v0376300.1
n.a. F-box protein; TAIR: AT3G25750.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q9C6X9|FB315_ARATH Probable F-box protein At1g44080; TrEMBL-Plants: tr|G7K9R3|G7K9R3_MEDTR Ubiquitin-protein ligase; Found in the gene: LotjaGi2g1v0376300 LjG1.1_chr2 87370109 87371756 +
2 domain predictions
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LotjaGi3g1v0122300.1
n.a. F-box protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|G7IWN5|G7IWN5_MEDTR F-box SKIP23-like protein; Found in the gene: LotjaGi3g1v0122300 LjG1.1_chr3 14951107 14956780 -
2 domain predictions
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LotjaGi3g1v0122300.2
n.a. F-box SKIP23-like protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|G7IWN5|G7IWN5_MEDTR F-box SKIP23-like protein; Found in the gene: LotjaGi3g1v0122300 LjG1.1_chr3 14951359 14961581 -
2 domain predictions
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LotjaGi3g1v0122300.3
n.a. F-box SKIP23-like protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|G7IWN5|G7IWN5_MEDTR F-box SKIP23-like protein; Found in the gene: LotjaGi3g1v0122300 LjG1.1_chr3 14958003 14961595 -
2 domain predictions
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LotjaGi3g1v0122400.1
n.a. F-box protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|A0A072UW30|A0A072UW30_MEDTR F-box SKIP23-like protein; Found in the gene: LotjaGi3g1v0122400 LjG1.1_chr3 14969192 14972185 -
2 domain predictions
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LotjaGi3g1v0290300_LC.1
n.a. F-box protein; TAIR: AT4G22180.1 F-box protein (DUF295); Swiss-Prot: sp|O49624|FB242_ARATH Putative F-box protein At4g22180; TrEMBL-Plants: tr|A0A1J7GDQ1|A0A1J7GDQ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0290300_LC LjG1.1_chr3 59228571 59230519 -
2 domain predictions
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LotjaGi3g1v0459900.1
n.a. F-box family protein; TAIR: AT2G17690.1 ascorbic acid mannose pathway regulator, putative (DUF295); Swiss-Prot: sp|Q3EBY8|FB111_ARATH F-box protein At2g17690; TrEMBL-Plants: tr|A0A1J7HDQ6|A0A1J7HDQ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0459900 LjG1.1_chr3 87457528 87458816 +
2 domain predictions
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LotjaGi3g1v0460000_LC.1
n.a. F-box family protein; TAIR: AT2G17690.1 ascorbic acid mannose pathway regulator, putative (DUF295); Swiss-Prot: sp|Q3EBY8|FB111_ARATH F-box protein At2g17690; TrEMBL-Plants: tr|A0A1J7HDQ6|A0A1J7HDQ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0460000_LC LjG1.1_chr3 87462477 87463040 +
2 domain predictions
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LotjaGi3g1v0493600.1
n.a. F-box protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|G7IWN5|G7IWN5_MEDTR F-box SKIP23-like protein; Found in the gene: LotjaGi3g1v0493600 LjG1.1_chr3 91200125 91203743 +
2 domain predictions
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LotjaGi4g1v0133700.1
n.a. F-box protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|A0A151QQP9|A0A151QQP9_CAJCA F-box protein SKIP23; Found in the gene: LotjaGi4g1v0133700 LjG1.1_chr4 19476556 19479798 -
2 domain predictions
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LotjaGi5g1v0005700.1
n.a. F-box protein; TAIR: AT1G57790.1 F-box family protein; Swiss-Prot: sp|Q9FVS1|FBK23_ARATH F-box/kelch-repeat protein At1g57790; TrEMBL-Plants: tr|G7KT59|G7KT59_MEDTR F-box protein; Found in the gene: LotjaGi5g1v0005700 LjG1.1_chr5 1449573 1451393 -
2 domain predictions
 –