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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0287400 |
| Transcript ID | LotjaGi2g1v0287400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60 kDa chaperonin; TAIR: AT1G26230.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic; TrEMBL-Plants: tr|A0A151R5F8|A0A151R5F8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0287400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76044479..76047702) extracted from Lotus japonicus Gifu genome v1.2.
CACCATTACTCTAACTGTTATCCTATCCACAACGTTGTCCAAGCTCCATTGTTCAACTTCAACTTGTCACACTACATAGT GCAAAAATAGTTGGTTCCTTCCCCCAAAAAACATCCTTGATTTCCAAGAAAACCAAAGCCATGGCATGTTCTCCATCATC TATATCTGCATTCTCATTCTCCACTCCATCATCACTTCCTAGACAACGAGCTTCTACTTCTTCTGTTCTAATCCCCAGAG CTATGTCCAAAGGCCTATACTTCAACCATGATGGTTCTACTACAAAGAAACTTCTTGTAAGTACTCTTCTAGCCTCTGAT TGTTTATTGTTTAACACTCACAATTTGGTTTTGCTTTTCACAATATTTCACTGACTTGGTTTTTGGTATTGGTGCAGGCA GGGGTGGACATGGTGGCAGAGCTTCTTGGTGTCACATTGGGTCCCAAGGGGAGAAATGTTGTGCTGCCAAACAAGTATGG GCCACCCAAGATTGTAAATGATGGAGAAACTGTTCTCAAAGAGGTGTTTTTTTTAACTCATTTTTATTATCAATCAAATG CTTCTTCTCTGGTGTTCTCTTTTTTGTAATAATGTTATTAGTTCTGAGAATTTTCAGATTGAATTGGAAGATCCTCTTGA GAATCTTGGAGTAAAATTGGTGAGACAAGCTGGTGCAAAAACCAATAACCTAGCTGGTGATGGTTCAACTACATCTGTTA TTCTTGCCCATGGCTTAATCACAGAGGGGACAAAGGTGCATGTGAACCCCAACTAATTCAGCCAAAATGTAATGATTTCA AATGTAAACTATTCTGAAAAGCCCCAAATGCTTAGATTTCAAATTGCAAATAAACATTGGAAAATATTACCTTTGAGTTT AGGTTTTAGACACCGTGCCAATGACTTTAAAAAGGGTGTTGTTAAATTTTGAGCTCTTAGCATGCTCTTTTCTTTTCCCT TTGTAGGTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGGATTGAGAAGACGGCAAAAGCACTTGTTTCTGA ACTCATGTTGATGTCTAGAGAAGTAAGCTTTACTCTCTCTAGGGATGATTGAAAATTTTGAGAATCATAGATTCATAATC AAAACTATTTGGCTGCAGATCTTAACTTAATTATTGATTTTGGTGCCTGCCAATTTTTGCTTGTAGCTGAATTCAGCGAA ACTGGTTGCATTTATAGGTTGAGGACCATGAGCTTAGAGATGTTGCAGCAGTCAGTGCTGGGAATGATTATGCAGTAGGA AACATGATTTCTGAGGCTCTTCATCAAGTAGGCAGGAGGGGAGTAGTTACAATAGAAAAAGGAAAGAGCACTGAGAATAC TCTGGAGATTGTAGAAGGAATGCAATTTGATCGCGGATATCTGTCCCCACACTTTGTCACGGATAAAGGAAAGATGACAG TGGAATTTCAAAACTGCAAGGTATAACAATTAGCATGTAAGCATCTCATGTAAGTTCTATAAAGTAATTAGATGGTGCTT AAATCTTTGGTTGCAGCTGCTTTTGGTGGACAAGAAAATCACAAACGCGAAGGAGCTGCTTAATATATTGAAAATTTCCT GGAGAGAGAAGTATCCACTTGTGATAGTTTCAGAGGGCATTGAGGAGGAAGCTCTGGCTCCAGTTCTTAAAAATAAGCTC AACGGCTCGCTTAAGGTAGCAGCCATTAAGGCTCCTGCGTTCGGTGAACGCAAGACCCACTACTTAGAAGACATTGCCAT CTTGACTGGAGGTAGAAGATCAAGTACACAGTTTTAGTAGCTTAAATATTCATTCTGTTTGCTGATATATTTTTGACAAC TAGAAGAAATGTTCTATCAGGAGTAACTGGTTGCAGTTGCTTAAATGACACAGACCAACTTATTAAAGACAAATAAATGA AAGACTTACTCATTTTCATTAATATGATAAAGTACTGAAAGCATTACTAGTTTCTAATATGGTCTTCAAGTTTTAACCCG TTCTCTATTAATCTTTCATATGTTTTTCAGGTACTGTAATCAGAGAAGACATGGGTTTCACCCTGGCAAAGGCTAGCACA GGTATGCTGGGTTCTGCTACAAAGATTGTCATCACACAGAATTCGACCCTAATAGTCACTGATGGGAGTACTCGAGTAGC TGTTGAGAAGAGGGTTTATCAACTTAGGAGGCTTGTTGAGGTTCATAAAGCACTCTGCTAGTACAGTGTTTAAGTTGTAA AAGTAACATATTGATATTGCATGGTTAACATCTCCTGGGATTACCTACACCTCTATTTTATATTTTGCAGAATACTGTAG AAAATTTCCAAAAGAAGATATTGAATGAAAGGATAGCAAGATTATCAGGGGGCATTGCCATTCTTCAGGTAATAAGAATT TCATTTTATTTTGTCTCATGATAATCTAAGATTTAAGAATTATGTTTCTATTGCAATTCAGCACCTGTAATTTAATCATA GGTAGGAGCACTAACAGAAGTTGAGTTGAAGGATAAGCAATTAAGAATAGAAGATGCATTGAATGCAACCAAGGTATTTA TTTTTTCTTGGCTTCAACATGTGATTTGCTATCAATAATTGCTAAGCTTCTAACTTAGAACATTTCAGGCAGCAATTGAG GAAGGTGTAGTAGTTGGTGGTGGCTGCAGCCTTTTAAGGCTATCCAAGAAGATGGATAGCATAAAAGAACTCCTGGACAA TGAAGAGCAAAAAGTAATCATCTGTTTCATAAAACTTAAGTTTTCCACCATCATGTTCAAACTTTACACTATAATGAGGC CTTTGTTCTAACAGTATGTTTTAAGTATTCATTTTATGTTGTGCCTTTTTGTTGATTGTTTAACATATGGAAATCTGTTA TCCTTATTTAGATTGGAGCTGAAATCTTCAAAAGAGCTTTGAGCTATCCTACTAGAAAGATAGCGAAAAATGCTGGTGTG AATGGCAATGTCGTCATAGATAAGGTCCTCAGGATGTTGAGAAACTATTTTCTGTAAGAGAATGATTACCAATAAGAATT TTGGATCTTCTCTAGTTTGTTTAGTTAACTCAGCTCAACAACATACATTGAATTAAAATGCATGCTTGAGGTTTTTCATG TCTTGCAGGTTTTATCAGACGATAACATGAATTTTGGTTACAATGCTGCGAGCGACTGTTATGAGGATCTCATGAAAGCT GGGATCATGGATCCAGCAAAGGTA
CDS sequence (LotjaGi2g1v0287400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATGTTCTCCATCATCTATATCTGCATTCTCATTCTCCACTCCATCATCACTTCCTAGACAACGAGCTTCTACTTC TTCTGTTCTAATCCCCAGAGCTATGTCCAAAGGCCTATACTTCAACCATGATGGTTCTACTACAAAGAAACTTCTTGCAG GGGTGGACATGGTGGCAGAGCTTCTTGGTGTCACATTGGGTCCCAAGGGGAGAAATGTTGTGCTGCCAAACAAGTATGGG CCACCCAAGATTGTAAATGATGGAGAAACTGTTCTCAAAGAGATTGAATTGGAAGATCCTCTTGAGAATCTTGGAGTAAA ATTGGTGAGACAAGCTGGTGCAAAAACCAATAACCTAGCTGGTGATGGTTCAACTACATCTGTTATTCTTGCCCATGGCT TAATCACAGAGGGGACAAAGGTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGGATTGAGAAGACGGCAAAA GCACTTGTTTCTGAACTCATGTTGATGTCTAGAGAAGTTGAGGACCATGAGCTTAGAGATGTTGCAGCAGTCAGTGCTGG GAATGATTATGCAGTAGGAAACATGATTTCTGAGGCTCTTCATCAAGTAGGCAGGAGGGGAGTAGTTACAATAGAAAAAG GAAAGAGCACTGAGAATACTCTGGAGATTGTAGAAGGAATGCAATTTGATCGCGGATATCTGTCCCCACACTTTGTCACG GATAAAGGAAAGATGACAGTGGAATTTCAAAACTGCAAGCTGCTTTTGGTGGACAAGAAAATCACAAACGCGAAGGAGCT GCTTAATATATTGAAAATTTCCTGGAGAGAGAAGTATCCACTTGTGATAGTTTCAGAGGGCATTGAGGAGGAAGCTCTGG CTCCAGTTCTTAAAAATAAGCTCAACGGCTCGCTTAAGGTAGCAGCCATTAAGGCTCCTGCGTTCGGTGAACGCAAGACC CACTACTTAGAAGACATTGCCATCTTGACTGGAGGTACTGTAATCAGAGAAGACATGGGTTTCACCCTGGCAAAGGCTAG CACAGGTATGCTGGGTTCTGCTACAAAGATTGTCATCACACAGAATTCGACCCTAATAGTCACTGATGGGAGTACTCGAG TAGCTGTTGAGAAGAGGGTTTATCAACTTAGGAGGCTTGTTGAGAATACTGTAGAAAATTTCCAAAAGAAGATATTGAAT GAAAGGATAGCAAGATTATCAGGGGGCATTGCCATTCTTCAGGTAGGAGCACTAACAGAAGTTGAGTTGAAGGATAAGCA ATTAAGAATAGAAGATGCATTGAATGCAACCAAGGCAGCAATTGAGGAAGGTGTAGTAGTTGGTGGTGGCTGCAGCCTTT TAAGGCTATCCAAGAAGATGGATAGCATAAAAGAACTCCTGGACAATGAAGAGCAAAAAATTGGAGCTGAAATCTTCAAA AGAGCTTTGAGCTATCCTACTAGAAAGATAGCGAAAAATGCTGGTGTGAATGGCAATGTCGTCATAGATAAGGTCCTCAG GATGTTGAGAAACTATTTTCTGTAA
Protein sequence (LotjaGi2g1v0287400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MACSPSSISAFSFSTPSSLPRQRASTSSVLIPRAMSKGLYFNHDGSTTKKLLAGVDMVAELLGVTLGPKGRNVVLPNKYG PPKIVNDGETVLKEIELEDPLENLGVKLVRQAGAKTNNLAGDGSTTSVILAHGLITEGTKVIAAGMNPVQIARGIEKTAK ALVSELMLMSREVEDHELRDVAAVSAGNDYAVGNMISEALHQVGRRGVVTIEKGKSTENTLEIVEGMQFDRGYLSPHFVT DKGKMTVEFQNCKLLLVDKKITNAKELLNILKISWREKYPLVIVSEGIEEEALAPVLKNKLNGSLKVAAIKAPAFGERKT HYLEDIAILTGGTVIREDMGFTLAKASTGMLGSATKIVITQNSTLIVTDGSTRVAVEKRVYQLRRLVENTVENFQKKILN ERIARLSGGIAILQVGALTEVELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSKKMDSIKELLDNEEQKIGAEIFK RALSYPTRKIAKNAGVNGNVVIDKVLRMLRNYFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 507 | 507 | 3.1E-276 | – | |
| PANTHER | 1 | 507 | 507 | 3.1E-276 | – | |
| CDD | 37 | 512 | 476 | 0.0 | ||
| SUPERFAMILY | 45 | 264 | 220 | 2.49E-52 | ||
| Gene3D | 46 | 508 | 463 | 2.2E-171 | ||
| Pfam | 58 | 507 | 450 | 5.5E-85 | ||
| PRINTS | 62 | 88 | 27 | 2.3E-57 | ||
| PRINTS | 118 | 145 | 28 | 2.3E-57 | ||
| Gene3D | 172 | 444 | 273 | 2.2E-171 | ||
| SUPERFAMILY | 218 | 410 | 193 | 3.14E-64 | ||
| Gene3D | 226 | 407 | 182 | 2.2E-171 | ||
| PRINTS | 302 | 325 | 24 | 2.3E-57 | ||
| PRINTS | 384 | 409 | 26 | 2.3E-57 | ||
| SUPERFAMILY | 407 | 507 | 101 | 1.01E-14 | ||
| PRINTS | 432 | 453 | 22 | 2.3E-57 | ||
| ProSitePatterns | 439 | 450 | 12 | - | ||
| Coils | 453 | 473 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of LotjaGi2g1v0287400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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