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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0289800 |
| Transcript ID | LotjaGi2g1v0289800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT1G11260.1 sugar transporter 1; Swiss-Prot: sp|P23586|STP1_ARATH Sugar transport protein 1; TrEMBL-Plants: tr|I3SEQ3|I3SEQ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0289800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76300902..76303200) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTCAAGGTTTCAATCTCTTCTCCTTACCCGCTTTCTCTTTTCCCAAGTTTGTAGAGCCAACACAATTCGTCCATGG CTATGGAGGCTCCACACCAGTATCCGGGGAAGCTCACCTTCAGGGTGGTCATCACCTGTATCATGGCAGCCACTGGTGGT TTGATTTTTGGTTATGATCATGGTGTTTCAGGTAAATAATTTTATTCATTCATTTTTGTTTTAATTCTAAAATATTTATT GCTTTGATGATAATGACATTTTCAATTACCCTTTTGGCTATTGTTTGAGTCTGAAAATGAGATTTTATTTCTGGGTTTTC AATGCTTTTATCTGCTGGATGAGATTTCTTATGTGGGTGTTTTGAGTATTTGTATTTTCCTCAATTTTGAGGTCAATTAT GTTAAAAAGGATTCATTTTTATTTTTTTTGGAAATCCAATTATATTAATAGAGGATAGAGTCTAAGCTCAGGATTAATTT TTATGATGCATTTTTCTGGGTTATGATGCATGTATTGTGGTTGATGAAATGTCTGACTTGGTTTTTTTTGTTGTGTTCTT CATTCTATAGGTGGTGTGACCTCCATGGATTCCTTCCTGAAGGAGTTTTTTCCATCTGTTTATGAGCAGGAGTCTAATGT GAAGCCTTCTGCAAACCAGTACTGCAAATTCAACAGTCAGATATTGACGCTGTTTACATCTTCCTTGTATCTGAGTGCTC TTGTTGCGGGTCTAGGGGCATCCACCATAACCAGGATTATGGGCAGGCGTGCAACTATGATTGTTGGTGGGTTATTCTTT GTATCAGGTGCATTGTTCAATGGATTAGCCGACGGCATCTGGATGCTTATTGTTGGAAGGTTGTTGCTTGGTTTTGGCAT TGGATGCGCCAATCAGGTGCATTTTCTTTAGATCTCCCAGCATGTTTGAATCAACTTATTTTTTTTTTCACAATCAATTT TGTTATGACACCCGGAAGTTACTCACAGATTCTTATTTATAGAATTGATTTTAATCTTGGAATCAATTGTAGAAAGATTT CCAAACAGACACTCAATTGGTTCTTGCTATGATTGTAGTCCTATGCTAACCGATAGTTGCTCTTCCCATTTTCAGTCAGT GCCAATTTATCTCTCAGAGATGGCTCCTTATAAATACCGGGGAGGTCTAAATATGTGTTTCCAATTGTCAATCACTATAG GCATCTTTGTGGCCAATCTATTTAACTACTATTTTGCCAAGATACTGAATGGTCAGGGATGGAGATTAAGTTTGGGGCTT GGTGCAGTCCCAGCCGTTATTTTTGTTGTAGGCTCACTTTGCCTTCCTGACTCACCGAGCTCCCTTGTTGCTCGCGGTCG TCACGAAGCTGCTAGACAGGAGCTTGTGAAAATACGCGGGACTACTGATATTGAGGCAGAGTTAAAAGACATTATTACTG CTAGTGAAGCTTTGGAAAATGTGAAACACCCTTGGAAGACCTTGTTGGAGAGAAAATACAGGCCACAGCTTGTTTTCGCC GTATGCATTCCCTTCTTCCAGCAATTCACTGGCTTGAATGTGATTACATTCTATGCTCCAATTTTGTTCAGAACAATCGG TTTCGGACCCACAGCTTCTCTCATGTCTGCAGTGATCATTGGAAGCTTTAAACCCGTTTCAACCCTTATTTCAATATTTG TTGTAGATAAATTCGGAAGACGCACCCTTTTCCTTGAAGGGGGTGCTCAAATGTTGATTTGCCAGGTACTTGTTTCACTT TCACATTTCTCCAACATCAACATTTTTCATTTCATTGGTCTGTTGGTTTTCAATTAATACGTATTCTCTGTTTTGGCCTC AGATTATCATGACAATTGCTATTGCTGTTACATTTGGCACAAGTGGGAACCCTGGCCAGCTGCCTAAGTGGTATGCAGTT GTGATTGTGGGTGTCATCTGTGTGTATGTCGCCGGTTTCGCTTGGTCTTGGGGTCCTCTAGGTTGGTTGGTGCCCAGCGA AATCTTTCCACTCGAAATTAGGCCTGCTTGTCAGAGTATCACGGTTGGTGTCAACATGACCTGCACTTTCTTCATAGCTC AATTCTTCACTGCAATGCTCTGTCACATGAAGTTTGGCTTGTTCCTCTTCTTTGGGGGCTTTGTGGTCATCATGACCATA TTCATCTACAAGCTATTTCCAGAAACAAAGGGTGTCCCACTTGAGGAAATGCATAAGGAATGGCAGAAACACCCTATCTG GGGCAAGTTTTTGGATGCAGGAAGAGCTGATGAGAAAGACTCTAAGTGATAATTGTTAG
CDS sequence (LotjaGi2g1v0289800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGGAGGCTCCACACCAGTATCCGGGGAAGCTCACCTTCAGGGTGGTCATCACCTGTATCATGGCAGCCACTGG TGGTTTGATTTTTGGTTATGATCATGGTGTTTCAGGTGGTGTGACCTCCATGGATTCCTTCCTGAAGGAGTTTTTTCCAT CTGTTTATGAGCAGGAGTCTAATGTGAAGCCTTCTGCAAACCAGTACTGCAAATTCAACAGTCAGATATTGACGCTGTTT ACATCTTCCTTGTATCTGAGTGCTCTTGTTGCGGGTCTAGGGGCATCCACCATAACCAGGATTATGGGCAGGCGTGCAAC TATGATTGTTGGTGGGTTATTCTTTGTATCAGGTGCATTGTTCAATGGATTAGCCGACGGCATCTGGATGCTTATTGTTG GAAGGTTGTTGCTTGGTTTTGGCATTGGATGCGCCAATCAGTCAGTGCCAATTTATCTCTCAGAGATGGCTCCTTATAAA TACCGGGGAGGTCTAAATATGTGTTTCCAATTGTCAATCACTATAGGCATCTTTGTGGCCAATCTATTTAACTACTATTT TGCCAAGATACTGAATGGTCAGGGATGGAGATTAAGTTTGGGGCTTGGTGCAGTCCCAGCCGTTATTTTTGTTGTAGGCT CACTTTGCCTTCCTGACTCACCGAGCTCCCTTGTTGCTCGCGGTCGTCACGAAGCTGCTAGACAGGAGCTTGTGAAAATA CGCGGGACTACTGATATTGAGGCAGAGTTAAAAGACATTATTACTGCTAGTGAAGCTTTGGAAAATGTGAAACACCCTTG GAAGACCTTGTTGGAGAGAAAATACAGGCCACAGCTTGTTTTCGCCGTATGCATTCCCTTCTTCCAGCAATTCACTGGCT TGAATGTGATTACATTCTATGCTCCAATTTTGTTCAGAACAATCGGTTTCGGACCCACAGCTTCTCTCATGTCTGCAGTG ATCATTGGAAGCTTTAAACCCGTTTCAACCCTTATTTCAATATTTGTTGTAGATAAATTCGGAAGACGCACCCTTTTCCT TGAAGGGGGTGCTCAAATGTTGATTTGCCAGTTTTGGCCTCAGATTATCATGACAATTGCTATTGCTGTTACATTTGGCA CAAGTGGGAACCCTGGCCAGCTGCCTAAGTGGTATGCAGTTGTGATTGTGGGTGTCATCTGTGTGTATGTCGCCGGTTTC GCTTGGTCTTGGGGTCCTCTAGGTTGGTTGGTGCCCAGCGAAATCTTTCCACTCGAAATTAGGCCTGCTTGTCAGAGTAT CACGGTTGGTGTCAACATGACCTGCACTTTCTTCATAGCTCAATTCTTCACTGCAATGCTCTGTCACATGAAGTTTGGCT TGTTCCTCTTCTTTGGGGGCTTTGTGGTCATCATGACCATATTCATCTACAAGCTATTTCCAGAAACAAAGGGTGTCCCA CTTGAGGAAATGCATAAGGAATGGCAGAAACACCCTATCTGGGGCAAGTTTTTGGATGCAGGAAGAGCTGATGAGAAAGA CTCTAAGTGA
Protein sequence (LotjaGi2g1v0289800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMEAPHQYPGKLTFRVVITCIMAATGGLIFGYDHGVSGGVTSMDSFLKEFFPSVYEQESNVKPSANQYCKFNSQILTLF TSSLYLSALVAGLGASTITRIMGRRATMIVGGLFFVSGALFNGLADGIWMLIVGRLLLGFGIGCANQSVPIYLSEMAPYK YRGGLNMCFQLSITIGIFVANLFNYYFAKILNGQGWRLSLGLGAVPAVIFVVGSLCLPDSPSSLVARGRHEAARQELVKI RGTTDIEAELKDIITASEALENVKHPWKTLLERKYRPQLVFAVCIPFFQQFTGLNVITFYAPILFRTIGFGPTASLMSAV IIGSFKPVSTLISIFVVDKFGRRTLFLEGGAQMLICQFWPQIIMTIAIAVTFGTSGNPGQLPKWYAVVIVGVICVYVAGF AWSWGPLGWLVPSEIFPLEIRPACQSITVGVNMTCTFFIAQFFTAMLCHMKFGLFLFFGGFVVIMTIFIYKLFPETKGVP LEEMHKEWQKHPIWGKFLDAGRADEKDSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 5 | 500 | 496 | 5.9E-264 | – | |
| PANTHER | 5 | 500 | 496 | 5.9E-264 | – | |
| TIGRFAM | 9 | 484 | 476 | 8.5E-119 | ||
| Gene3D | 10 | 491 | 482 | 5.1E-120 | – | |
| Phobius | 13 | 33 | 21 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| ProSiteProfiles | 20 | 477 | 458 | 43.237 | ||
| Pfam | 21 | 488 | 468 | 7.9E-124 | ||
| SUPERFAMILY | 22 | 487 | 466 | 2.75E-56 | ||
| CDD | 23 | 475 | 453 | 0.0 | – | |
| PRINTS | 28 | 38 | 11 | 6.3E-29 | ||
| Phobius | 34 | 75 | 42 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 95 | 105 | 11 | - | – | |
| Phobius | 106 | 125 | 20 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 126 | 130 | 5 | - | – | |
| Phobius | 131 | 153 | 23 | - | – | |
| PRINTS | 132 | 151 | 20 | 6.3E-29 | ||
| ProSitePatterns | 137 | 162 | 26 | - | ||
| Phobius | 154 | 164 | 11 | - | – | |
| Phobius | 165 | 186 | 22 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 187 | 197 | 11 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 198 | 217 | 20 | - | – | |
| Phobius | 218 | 278 | 61 | - | – | |
| TMHMM | 279 | 301 | 23 | - | – | |
| Phobius | 279 | 303 | 25 | - | – | |
| PRINTS | 289 | 299 | 11 | 6.3E-29 | ||
| Phobius | 304 | 314 | 11 | - | – | |
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 315 | 337 | 23 | - | – | |
| ProSitePatterns | 333 | 350 | 18 | - | ||
| Phobius | 338 | 348 | 11 | - | – | |
| Phobius | 349 | 372 | 24 | - | – | |
| TMHMM | 351 | 373 | 23 | - | – | |
| Phobius | 373 | 383 | 11 | - | – | |
| Phobius | 384 | 411 | 28 | - | – | |
| TMHMM | 386 | 408 | 23 | - | – | |
| PRINTS | 390 | 411 | 22 | 6.3E-29 | ||
| Phobius | 412 | 422 | 11 | - | – | |
| PRINTS | 413 | 425 | 13 | 6.3E-29 | ||
| TMHMM | 423 | 445 | 23 | - | – | |
| Phobius | 423 | 446 | 24 | - | – | |
| Phobius | 447 | 451 | 5 | - | – | |
| TMHMM | 452 | 474 | 23 | - | – | |
| Phobius | 452 | 473 | 22 | - | – | |
| Phobius | 474 | 509 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0289800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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