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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0308200 |
| Transcript ID | LotjaGi2g1v0308200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-amylase; TAIR: AT1G69830.1 alpha-amylase-like 3; Swiss-Prot: sp|Q94A41|AMY3_ARATH Alpha-amylase 3, chloroplastic; TrEMBL-Plants: tr|A0A0B2PHN3|A0A0B2PHN3_GLYSO Alpha-amylase; Found in the gene: LotjaGi2g1v0308200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78249344..78256187) extracted from Lotus japonicus Gifu genome v1.2.
CCGTTTCGAGCAGTCGAATCAACCTCTTATAAAAGATAAAAGTATACTACCTAGTTCTACAAAACCGGTCCGACCAAGTT TGTGCAACCTGCGATCCTTTCTTGTTTTTTTGTTTGCGTTTGGTTGCAAAGAGCAACGATCATGTCAACCGTTGCACTGG AGCCTCTGTTCTTCCACCTTCGCCGGAGAGAAACTCCGATTCACCTTTCCAAACAGAACCCATTCAGACCCTTCTTTCTC ATCAGCGCCTCTTCTAACCTCAACCTCAATCTCAATGCCTCCTTCACCTTCCGCCAACCCCGCATGCCTGCACTTGCTGC TTCCCTTACAGACACACCTATCATCGACCCCCTTCAATGCTCTGACACCTTCTTCACCAACACTTTCCCAATCAACACAA CCCAAACGGTCTCAACTTTCCTCTCTCTCTCTCTCTATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGT GTTGTGCATGTATAAATGTATATATGATGCATATGTCTTGTTTGATTTCCTAATAAAGTGTTGGGCAATACCCAAAAGGG AAAAGTTTTGCTTTTTGTTTCAGGGGTATGTTTAGTTTCAGAGTCAATTAGTTATTGAGTGCTTGGGTGTCAAGTTTTTG TTTTTAGGTTGGTTTTTTTTTCTCTGAGATGAAAAGGTTGAAACTTTTGAGTCAGCTCAATCAAATGTTTTTGTGTTGAT TGGAATGGATTTATTTTTTTCAGGTGGAGGGAAAGGTTTTTGTGAGACTGGATCACAGGAAGGATTTGAGAGACTTGGAG CTTACAGTGAGTTGCAATCTACCTGGAAAATGGATTCTTCACTGGGGAGTTACCCATGGTGATGATGTTGGAAGGTACAT GTTGAACTAAATGTTTGAACTTTGAATATTCATCCTATTTGATCTTTAGGTTCCTCATTATTTTATTTTAATTCATATCT TTTGCAAGAGCCACATGTTAAATGTTAAATACCCATTATCCAATAGTTTTATATTAATAGGTGTAAGCTTGATTCTTCAG GGAATGGGATCAACCTTCTCATGATATGATACCCCCTGGATCTGTTTCTATTAAGGTAGACAATGGTAGCATATTGGCAC ATATTCATTATTGCCATGCAGAAAGTTTGAGTTGGAAGTACAAAATTTCAGGACTGTGCAATAGAGACACCCTTGATGAA GTCATTGTTATCTACTGAAAGCGATACATTTCATGAAGTCAGGATTGATCTCAAACCCAACAATGAAATTTCAGCAATTA ATTTTGTTCTCAAGGTTAATTTTTAACAATTAGCAATTGAGAATGCTTAGACAGTTAGATATAAGGCATTGATTATAAGT ACCTTTTGAGTGAACATTGTTCTTTTTCTCTTCTATCATTTCTCTCTGCCTGCTTCCCAATTTGGGTGGGTTCTCTTGTT GATTCAGGATGAGGAATCTGGAGCTTGGTATAGAAACCAAGGAAGAGATTTCAGGGTTCCTTTGGTCAACTACCTTAAGG CAGATACTAATATGATTGGAACTAAAAGAGGCTTTAGTTTATGGCCAGGTTTTTCAAATCATTACACTTTCTACTTTATT TGCTTCTTGACTCAATTCCTAATGCCTAGGAGTGTCAAATAAATCATAATATTGTGATACACAGCCCATGACTTGTTGTA TTATTTCCTCAATGATAGAGAATTTAGGGCAGATGCCTAAAATGTTCCTCAAGTCAAAATCAGGTCAGGATGGTAGCAGC AAAACCAGAGATCCAAAACAAGAAAATACTCAACCAGAAGGTTTCTATGTAGAAATTCCTATTACAAAGGAGGTTTCAAT TAATAACTTCATCCGTGTCTCAATTAAGAAATGCTTTGAGTCTGAGGCAGTTAAGAACCTTTTATGTTTGGAAACGGATC TACCTGGAGATATTGTTCTTCACTGGGGAGTTTGCAGGGATGATTCAAGAAAGTGGGAAGTTCCACCTGCCCCTTATCCG CCAGAAACAATAACATTTAAAGACAAAGCTTTGAGAACTCGATTACAGGTACTGATTGGAGTACAAGCTGTCCTTTTTCT TATTTTATGTCTCAGAACTCATATTTGAGTTATCATGTTTACTACCAACCTGGTGCTGTACACCTCTTCCCCATTCTTTG CTGCAAAATATTTTCAAATAATTTATGCTCTTTGATGAATATATCTAGGTTATGAATGAATAAATGGTCTTCAAGCTACA GTTCATCCTTTTGGTCATGCTAAGAGAACTTCATATAGACATAGTAGAGTAGTTGATCCGTTTCTTTGTGTTTTATGATA TAGACATTATAACCTGTGTTGGGTGAAAACTTGAAGTTTCTTTATCTTAGACATAGTACAGTAGTTATTGCCTTTCTATG TGTTCAATGATATATTTACTTCCATCCTGTTTTGTAGCCAAGAGGCAGTGGAAAAGGATCTTCAGTACTAATCACTTTAG GAGAAGAGTTTTCAGGGTTTCTTTTTGTTCTTAAGCAAAATGAAAAGACTTGGTTCAAGCAAATGAGAAACGACTTCTAT ATCCCCCTCTCAAGTTCAGGTAGCTTGCCTATTGATGGCAACAGGGAGGATCAATCAGGTGTGCAGAGGGAAGCGGCTGA AGAGGCAAGTCAAGGGACTTCTTTCTTTTCATTTACTGATGGAATTATCAATGAAATAAGGAATTTGGTGACAGACAATT CCTCTGAGAAAAGTAGAAAGACAAAATCCAAAAAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAGACTGGCTGCGGAA GCCTATATTTTCTTCAAAACCTCCATTCCATATTTCTCAGAGGCAACTATTGCAGAACCTGAAGCACCTATTGCGGAACC TGAAGCTGCATCTGAATCAGAGGCACTGGCTCTGGATCCAGAAATATGCTCAGGGACAGGCACCGGATATGAAATATTAT GCCAAGGGTTTAACTGGGAATCTCATAAAACTGGAAGATGGTACATGGAGCTTAAGGAGAAAGCTTCAGAACTAGCATCA CTTGGTTTTACTGTGGTTTGGCTACCACCACCTACAGAGTCTGTGTCTCCTGAAGGATACATGCCAAAGGATTTATATAA TTTGAATTCCAGGTACTAGATCATCTCTGATTATACCTAGGTAGAAGGTCCAGTGTTAGGAAAATTTCTTACATTCAACA GCATATGCTGGGCTTTCAGATACTATCATCACTCATTAACTTGAAAAGGCATCATACTTCTTTCTGCTGATTTATATAGT TCATTAGAAAAAAAATAATCTCAAAGGATGGATAACTTTCATTCATAACATCATCATGAAAAGGAACTTGTTTATATGAA TAGTTACTTTTTTTTAATAAAATAAATATCAGATATGGGAACACTGATGAACTGAAAGATTTGGTGAAACGACTTCATCA AGTTGGCATTAGAGCTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTGTCAGAATCAGAATGGTATTTGGAACA TATTTGGAGGTCGTCTTAACTGGGATGACTGTGCAGTTGTTGCTGATGATCCACATTTTCAGGTTTGTTTGTAAAGGTTT TGGATATGTGTTTTGATCTTGAACACTATTAATAATAGTCCTAAAACAAAAGGATTCTCCACTTTCTCTATAACATAGTA CTTTCTGTTTAGGGTTCAAACCCAAGTCTTTCTTTCCATTATGTTTTGTTGATAGTTTTAATGCCACCATATTTTCATTT TTCTGGATGAATCTGATACTCATAATGGATTTCCTTCCTAACATACAGGGGAGGGGTAACAACAGTAGTGGAGATAATTT TCATGCTGCTCCAAACATTGATCACTCACAGGAATTTGTGAGAAAGGATCTCAAAGAATGGTTATGCTGGTTGAGGTTGA TATTTTGAGACCCAATTTTTCTTTAGCTTACTATTAAATCGTTTTGTGTGTAGATTTTTTACATTATAATCACATTGTTT GGGGAGTCATGGTTCCAATGCAAAGATATCTATGTTAGAGAGCTAAGACATTCTGGTATATGAGGGATGCTTAAACCATC GTCTGAGAATTTTGTAAAATTTCATGTTAGAAGCTTTATTTCCAGACTTGATTCTGGCTGCTAGTTGTACATGACTTAGC AACTACCGTAATATGGCGTAACTGAATACAAATGTTCTAGTTTCATATGAATAGTTTGTAATTTTGTATTAGTGCATTAG CATCATTGGTATAACCGTAGAGCTTTAACTTCTTTCTCCGGAGGATTCTAGAACATGCTTGAGAGCTGAGTTGGTTTATC ATCACCCATTTGTAGGTGTATTATTTTGTCTCAGACATCTCATCTCATGGTAACATGGGATGCCAGTCCATTACAGTTTA GTAGCATCCTAGTTTTTTTAGTCCCTTCGAGTTCTTTGCTTCCAGAAGAGTCATCAATTTTCTTTGAAAGCTACACCAAT TTATACACCCTTGTAACATTTTCTCTATTTCTTCTAAACTTGTGCATATATGTTGCTGATTTTCTACTGTTCCTACATGG ACAACCTATGTATAATTTTCTTTTTGTAATAAAGCAGATTGGTATTATCCAATGTTTCTTTTAAGAATGAGCATTAAAGA CAAGATGCTTTGAAAGTGATTCTTTGCTGTGCAGACCAAATTATCTTAGATCATTTTTACCTTGTAGCCTATTAGCCTCT TGAGATTCTTTGTTTGTATCCATTGTTAGTTTCATACCATGTTTATGTGAATTAGGTTCATTTTTATTTAAAAAGTTATG TCATCAGTGGTATAGAGTATTACAAAATTGTATATTTTTTAACACTGTGACCTTCAGGAATGAAATTGGGTATGATGGAT GGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTACATAAAGGACTACCTGGATGCAAGTGAACCTTACTTTGCTGTC GGAGAATACTGGGATTCCCTTAGTTATACATATGGTGAAATGGATTGTAATCAAGATGCTCATAGGCAGAGGATAGTTGA CTGGATCAAAGCCACCAATGGTACAGCTGGTGCATTTGATGTTACAACAAAAGGGATTCTGCACTCTGTAAGCACTAACT TGTACATTTTTTTTACAACATTTGTTCAAATATAAATATTCCATATACCTCTTACAAAGTCAAGTGTGCTTTGTAGCTAT CACGATTTCATATTTTTGTTCGAATTTGTCCACATTTTCTTTTTTGGAGTAAAGATAGTATACTACTAGGTTTCTTGAGT TTTTTTCATAAGAAAACACAATGTGCATGCTGTGATGTGATTGCTTTCCAATCCTGTCTATTTAGGGTGTGTCTGTTTTA ACGTTTTCATCCGTTAGCACAAGTTCCAATGCAGAAAAACATCGTTTTTGATGGACAAAATCTGCTTTTACTGAATGAAA ATTGGCTCTTGGATTAACTAAATGTGAAATGTGTTTTTACTTTCATTTCAACTATAACTCAAACATACTTAGTTCTTTAA TCTTGGAATGTTAAATTCTTTGCCATTATAGGCACTGGAAAGATGTGAATATTGGAGGTTGTCAGATCAGCAGGGAAAAC CCCCTGGTGTTGTAGGGTGGTGGCCATCTCGTGCTGTTACTTTTATAGAGAATCATGACACTGGCTCTACCCAGGTTTGA ACTTCTTTCTAAAAATATCATGATACAATTTATAATTTTTATTAGGTTTAATTTCTTTGAAAGAGTCTATAATGTAGAAA TGGTTTATTCATTATTTTCTCTTGCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGGAAGGATATGCTTACATTCT TACTCATCCAGGAACCCCATCAGTGTTTTTTGACCACATTTTCTCTCATTATAAAAATGAAATAGCAAGTCTTGTATCTT GCAGGAAGAGGAACAAGATCCACTGCAGGAGTACAGTAAGTTTTCAGAATTTTGTCCTTGATACTAACCAGTACTATGTA CTCAATATTTTCTTGGTGTTCGATATGGAAACTAATTGATACCATATGCATGGTAATATTTTCATGATTTCTTTAATCAA ACTGTGAATGTGTTCTTTATATGTTCATTGGCAAATTGATGTAATGTTCTAAGGTTGATAGTGTGGGAGCGCACTAACCT TTCCTCTTTCATGCTTAAGGTTCAAATTTGTAAAGCAGAAAGGGATGTTTATGCAGCCATGATTGATGAAAAAATTGCTA TGAAGATTGGACCTGGACATTTTGAACCACCTACTGGCTCCCACAGATGGTCCTTAGCAATTGGGGGAAGAGACTATAAG ATTTGGGAAGCATTATAATATAATGAAGTACCTTACAAGTGTGTGTATATATATGGTCACTGGTAAATCCTCCCCTTTTA CCTTGCTGAAGAAGCAAGTTCTATTCAAGAATAGGTTGGGGTATTCAGATGGTGGCAGGGCAGGCTCCAATTTGAAGTGA GTTGTGCCACGCTAGCTGTTGCTTAATGTTAGCATTTCAGCCAAATGTAGGTCCTCATTTGGAACATGAAAAATGTGGAT CCCTTAAAGTCAGAAAATGAGTTGTATCATACATACTATATATACAAAGCACATGGTTTTCAGATATTGGAAAGATAGAT TGTGTGTATGTTTGGGTCTGCGTTTCCACACATTGGACGTGCGTTTCCTAATGCTCCTTATAGCTCTAGGAAAACACACG TATTTTCGGCCTCGAACACATATTCAAACGGACAACGGACCCTGTATCTGTTATCCAAAAACGGGCACTGATGTTGAATA TTTTTTCTCTGAAGACATATAAAGATGGCAACGTGTTAGTGTAC
CDS sequence (LotjaGi2g1v0308200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGAACTAAAAGAGGCTTTAGTTTATGGCCAGAGAATTTAGGGCAGATGCCTAAAATGTTCCTCAAGTCAAAATC AGGTCAGGATGGTAGCAGCAAAACCAGAGATCCAAAACAAGAAAATACTCAACCAGAAGGTTTCTATGTAGAAATTCCTA TTACAAAGGAGGTTTCAATTAATAACTTCATCCGTGTCTCAATTAAGAAATGCTTTGAGTCTGAGGCAGTTAAGAACCTT TTATGTTTGGAAACGGATCTACCTGGAGATATTGTTCTTCACTGGGGAGTTTGCAGGGATGATTCAAGAAAGTGGGAAGT TCCACCTGCCCCTTATCCGCCAGAAACAATAACATTTAAAGACAAAGCTTTGAGAACTCGATTACAGCCAAGAGGCAGTG GAAAAGGATCTTCAGTACTAATCACTTTAGGAGAAGAGTTTTCAGGGTTTCTTTTTGTTCTTAAGCAAAATGAAAAGACT TGGTTCAAGCAAATGAGAAACGACTTCTATATCCCCCTCTCAAGTTCAGGTAGCTTGCCTATTGATGGCAACAGGGAGGA TCAATCAGGTGTGCAGAGGGAAGCGGCTGAAGAGGCAAGTCAAGGGACTTCTTTCTTTTCATTTACTGATGGAATTATCA ATGAAATAAGGAATTTGGTGACAGACAATTCCTCTGAGAAAAGTAGAAAGACAAAATCCAAAAAAGCACAAGAAAGCATT CTTCAAGAAATTGAAAGACTGGCTGCGGAAGCCTATATTTTCTTCAAAACCTCCATTCCATATTTCTCAGAGGCAACTAT TGCAGAACCTGAAGCACCTATTGCGGAACCTGAAGCTGCATCTGAATCAGAGGCACTGGCTCTGGATCCAGAAATATGCT CAGGGACAGGCACCGGATATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATAAAACTGGAAGATGGTACATGGAG CTTAAGGAGAAAGCTTCAGAACTAGCATCACTTGGTTTTACTGTGGTTTGGCTACCACCACCTACAGAGTCTGTGTCTCC TGAAGGATACATGCCAAAGGATTTATATAATTTGAATTCCAGATATGGGAACACTGATGAACTGAAAGATTTGGTGAAAC GACTTCATCAAGTTGGCATTAGAGCTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTGTCAGAATCAGAATGGT ATTTGGAACATATTTGGAGGTCGTCTTAACTGGGATGACTGTGCAGTTGTTGCTGATGATCCACATTTTCAGGGGAGGGG TAACAACAGTAGTGGAGATAATTTTCATGCTGCTCCAAACATTGATCACTCACAGGAATTTGTGAGAAAGGATCTCAAAG AATGGTTATGCTGGTTGAGGAATGAAATTGGGTATGATGGATGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTAC ATAAAGGACTACCTGGATGCAAGTGAACCTTACTTTGCTGTCGGAGAATACTGGGATTCCCTTAGTTATACATATGGTGA AATGGATTGTAATCAAGATGCTCATAGGCAGAGGATAGTTGACTGGATCAAAGCCACCAATGGTACAGCTGGTGCATTTG ATGTTACAACAAAAGGGATTCTGCACTCTGCACTGGAAAGATGTGAATATTGGAGGTTGTCAGATCAGCAGGGAAAACCC CCTGGTGTTGTAGGGTGGTGGCCATCTCGTGCTGTTACTTTTATAGAGAATCATGACACTGGCTCTACCCAGGGTCATTG GAGATTTCCCAGTGGAAAAGAAATGGAAGGATATGCTTACATTCTTACTCATCCAGGAACCCCATCAGTGTTTTTTGACC ACATTTTCTCTCATTATAAAAATGAAATAGCAAGTCTTGTATCTTGCAGGAAGAGGAACAAGATCCACTGCAGGAGTACA GTTCAAATTTGTAAAGCAGAAAGGGATGTTTATGCAGCCATGATTGATGAAAAAATTGCTATGAAGATTGGACCTGGACA TTTTGAACCACCTACTGGCTCCCACAGATGGTCCTTAGCAATTGGGGGAAGAGACTATAAGATTTGGGAAGCATTATAA
Protein sequence (LotjaGi2g1v0308200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGTKRGFSLWPENLGQMPKMFLKSKSGQDGSSKTRDPKQENTQPEGFYVEIPITKEVSINNFIRVSIKKCFESEAVKNL LCLETDLPGDIVLHWGVCRDDSRKWEVPPAPYPPETITFKDKALRTRLQPRGSGKGSSVLITLGEEFSGFLFVLKQNEKT WFKQMRNDFYIPLSSSGSLPIDGNREDQSGVQREAAEEASQGTSFFSFTDGIINEIRNLVTDNSSEKSRKTKSKKAQESI LQEIERLAAEAYIFFKTSIPYFSEATIAEPEAPIAEPEAASESEALALDPEICSGTGTGYEILCQGFNWESHKTGRWYME LKEKASELASLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNTDELKDLVKRLHQVGIRALGDAVLNHRCAHCQNQNG IWNIFGGRLNWDDCAVVADDPHFQGRGNNSSGDNFHAAPNIDHSQEFVRKDLKEWLCWLRNEIGYDGWRLDFVRGFWGGY IKDYLDASEPYFAVGEYWDSLSYTYGEMDCNQDAHRQRIVDWIKATNGTAGAFDVTTKGILHSALERCEYWRLSDQQGKP PGVVGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMEGYAYILTHPGTPSVFFDHIFSHYKNEIASLVSCRKRNKIHCRST VQICKAERDVYAAMIDEKIAMKIGPGHFEPPTGSHRWSLAIGGRDYKIWEAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 23 | 47 | 25 | - | – | |
| PANTHER | 194 | 690 | 497 | 2.0E-212 | – | |
| PANTHER | 194 | 690 | 497 | 2.0E-212 | – | |
| SUPERFAMILY | 300 | 618 | 319 | 1.28E-69 | ||
| Gene3D | 301 | 634 | 334 | 2.3E-126 | – | |
| SMART | 301 | 630 | 330 | 2.0E-43 | ||
| CDD | 302 | 641 | 340 | 3.09621E-176 | – | |
| Pfam | 328 | 581 | 254 | 9.7E-17 | ||
| PRINTS | 379 | 390 | 12 | 8.7E-5 | ||
| PRINTS | 465 | 476 | 12 | 8.7E-5 | ||
| PRINTS | 569 | 581 | 13 | 8.7E-5 | ||
| SMART | 631 | 691 | 61 | 9.2E-29 | ||
| Pfam | 632 | 690 | 59 | 2.4E-22 | ||
| SUPERFAMILY | 635 | 690 | 56 | 3.96E-17 | – | |
| Gene3D | 635 | 692 | 58 | 6.0E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Alpha-amylase activity | Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi2g1v0308200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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