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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0308200 |
| Transcript ID | LotjaGi2g1v0308200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-amylase; TAIR: AT1G69830.1 alpha-amylase-like 3; Swiss-Prot: sp|Q94A41|AMY3_ARATH Alpha-amylase 3, chloroplastic; TrEMBL-Plants: tr|A0A0R0KR39|A0A0R0KR39_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0308200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78249382..78256114) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGTTTGTGCAACCTGCGATCCTTTCTTGTTTTTTTGTTTGCGTTTGGTTGCAAAGAGCAACGATCATGTCAACCGTT GCACTGGAGCCTCTGTTCTTCCACCTTCGCCGGAGAGAAACTCCGATTCACCTTTCCAAACAGAACCCATTCAGACCCTT CTTTCTCATCAGCGCCTCTTCTAACCTCAACCTCAATCTCAATGCCTCCTTCACCTTCCGCCAACCCCGCATGCCTGCAC TTGCTGCTTCCCTTACAGACACACCTATCATCGACCCCCTTCAATGCTCTGACACCTTCTTCACCAACACTTTCCCAATC AACACAACCCAAACGGTCTCAACTTTCCTCTCTCTCTCTCTCTATATATATATATATATATATATATATGTGTGTGTGTG TGTGTGTGTTGTGCATGTATAAATGTATATATGATGCATATGTCTTGTTTGATTTCCTAATAAAGTGTTGGGCAATACCC AAAAGGGAAAAGTTTTGCTTTTTGTTTCAGGGGTATGTTTAGTTTCAGAGTCAATTAGTTATTGAGTGCTTGGGTGTCAA GTTTTTGTTTTTAGGTTGGTTTTTTTTTCTCTGAGATGAAAAGGTTGAAACTTTTGAGTCAGCTCAATCAAATGTTTTTG TGTTGATTGGAATGGATTTATTTTTTTCAGGTGGAGGGAAAGGTTTTTGTGAGACTGGATCACAGGAAGGATTTGAGAGA CTTGGAGCTTACAGTGAGTTGCAATCTACCTGGAAAATGGATTCTTCACTGGGGAGTTACCCATGGTGATGATGTTGGAA GGTACATGTTGAACTAAATGTTTGAACTTTGAATATTCATCCTATTTGATCTTTAGGTTCCTCATTATTTTATTTTAATT CATATCTTTTGCAAGAGCCACATGTTAAATGTTAAATACCCATTATCCAATAGTTTTATATTAATAGGTGTAAGCTTGAT TCTTCAGGGAATGGGATCAACCTTCTCATGATATGATACCCCCTGGATCTGTTTCTATTAAGGTAGACAATGGTAGCATA TTGGCACATATTCATTATTGCCATGCAGAAAGTTTGAGTTGGAAGTACAAAATTTCAGGACTGTGCAATAGAGACACCCT TGATGAAGTCATTGTTATCTACTGAAAGCGATACATTTCATGAAGTCAGGATTGATCTCAAACCCAACAATGAAATTTCA GCAATTAATTTTGTTCTCAAGGTTAATTTTTAACAATTAGCAATTGAGAATGCTTAGACAGTTAGATATAAGGCATTGAT TATAAGTACCTTTTGAGTGAACATTGTTCTTTTTCTCTTCTATCATTTCTCTCTGCCTGCTTCCCAATTTGGGTGGGTTC TCTTGTTGATTCAGGATGAGGAATCTGGAGCTTGGTATAGAAACCAAGGAAGAGATTTCAGGGTTCCTTTGGTCAACTAC CTTAAGGCAGATACTAATATGATTGGAACTAAAAGAGGCTTTAGTTTATGGCCAGGTTTTTCAAATCATTACACTTTCTA CTTTATTTGCTTCTTGACTCAATTCCTAATGCCTAGGAGTGTCAAATAAATCATAATATTGTGATACACAGCCCATGACT TGTTGTATTATTTCCTCAATGATAGAGAATTTAGGGCAGATGCCTAAAATGTTCCTCAAGTCAAAATCAGGTCAGGATGG TAGCAGCAAAACCAGAGATCCAAAACAAGAAAATACTCAACCAGAAGGTTTCTATGTAGAAATTCCTATTACAAAGGAGG TTTCAATTAATAACTTCATCCGTGTCTCAATTAAGAAATGCTTTGAGTCTGAGGCAGTTAAGAACCTTTTATGTTTGGAA ACGGATCTACCTGGAGATATTGTTCTTCACTGGGGAGTTTGCAGGGATGATTCAAGAAAGTGGGAAGTTCCACCTGCCCC TTATCCGCCAGAAACAATAACATTTAAAGACAAAGCTTTGAGAACTCGATTACAGGTACTGATTGGAGTACAAGCTGTCC TTTTTCTTATTTTATGTCTCAGAACTCATATTTGAGTTATCATGTTTACTACCAACCTGGTGCTGTACACCTCTTCCCCA TTCTTTGCTGCAAAATATTTTCAAATAATTTATGCTCTTTGATGAATATATCTAGGTTATGAATGAATAAATGGTCTTCA AGCTACAGTTCATCCTTTTGGTCATGCTAAGAGAACTTCATATAGACATAGTAGAGTAGTTGATCCGTTTCTTTGTGTTT TATGATATAGACATTATAACCTGTGTTGGGTGAAAACTTGAAGTTTCTTTATCTTAGACATAGTACAGTAGTTATTGCCT TTCTATGTGTTCAATGATATATTTACTTCCATCCTGTTTTGTAGCCAAGAGGCAGTGGAAAAGGATCTTCAGTACTAATC ACTTTAGGAGAAGAGTTTTCAGGGTTTCTTTTTGTTCTTAAGCAAAATGAAAAGACTTGGTTCAAGCAAATGAGAAACGA CTTCTATATCCCCCTCTCAAGTTCAGGTAGCTTGCCTATTGATGGCAACAGGGAGGATCAATCAGGTGTGCAGAGGGAAG CGGCTGAAGAGGCAAGTCAAGGGACTTCTTTCTTTTCATTTACTGATGGAATTATCAATGAAATAAGGAATTTGGTGACA GACAATTCCTCTGAGAAAAGTAGAAAGACAAAATCCAAAAAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAGACTGGC TGCGGAAGCCTATATTTTCTTCAAAACCTCCATTCCATATTTCTCAGAGGCAACTATTGCAGAACCTGAAGCACCTATTG CGGAACCTGAAGCTGCATCTGAATCAGAGGCACTGGCTCTGGATCCAGAAATATGCTCAGGGACAGGCACCGGATATGAA ATATTATGCCAAGGGTTTAACTGGGAATCTCATAAAACTGGAAGATGGTACATGGAGCTTAAGGAGAAAGCTTCAGAACT AGCATCACTTGGTTTTACTGTGGTTTGGCTACCACCACCTACAGAGTCTGTGTCTCCTGAAGGATACATGCCAAAGGATT TATATAATTTGAATTCCAGGTACTAGATCATCTCTGATTATACCTAGGTAGAAGGTCCAGTGTTAGGAAAATTTCTTACA TTCAACAGCATATGCTGGGCTTTCAGATACTATCATCACTCATTAACTTGAAAAGGCATCATACTTCTTTCTGCTGATTT ATATAGTTCATTAGAAAAAAAATAATCTCAAAGGATGGATAACTTTCATTCATAACATCATCATGAAAAGGAACTTGTTT ATATGAATAGTTACTTTTTTTTAATAAAATAAATATCAGATATGGGAACACTGATGAACTGAAAGATTTGGTGAAACGAC TTCATCAAGTTGGCATTAGAGCTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTGTCAGAATCAGAATGGTATT TGGAACATATTTGGAGGTCGTCTTAACTGGGATGACTGTGCAGTTGTTGCTGATGATCCACATTTTCAGGTTTGTTTGTA AAGGTTTTGGATATGTGTTTTGATCTTGAACACTATTAATAATAGTCCTAAAACAAAAGGATTCTCCACTTTCTCTATAA CATAGTACTTTCTGTTTAGGGTTCAAACCCAAGTCTTTCTTTCCATTATGTTTTGTTGATAGTTTTAATGCCACCATATT TTCATTTTTCTGGATGAATCTGATACTCATAATGGATTTCCTTCCTAACATACAGGGGAGGGGTAACAACAGTAGTGGAG ATAATTTTCATGCTGCTCCAAACATTGATCACTCACAGGAATTTGTGAGAAAGGATCTCAAAGAATGGTTATGCTGGTTG AGGTTGATATTTTGAGACCCAATTTTTCTTTAGCTTACTATTAAATCGTTTTGTGTGTAGATTTTTTACATTATAATCAC ATTGTTTGGGGAGTCATGGTTCCAATGCAAAGATATCTATGTTAGAGAGCTAAGACATTCTGGTATATGAGGGATGCTTA AACCATCGTCTGAGAATTTTGTAAAATTTCATGTTAGAAGCTTTATTTCCAGACTTGATTCTGGCTGCTAGTTGTACATG ACTTAGCAACTACCGTAATATGGCGTAACTGAATACAAATGTTCTAGTTTCATATGAATAGTTTGTAATTTTGTATTAGT GCATTAGCATCATTGGTATAACCGTAGAGCTTTAACTTCTTTCTCCGGAGGATTCTAGAACATGCTTGAGAGCTGAGTTG GTTTATCATCACCCATTTGTAGGTGTATTATTTTGTCTCAGACATCTCATCTCATGGTAACATGGGATGCCAGTCCATTA CAGTTTAGTAGCATCCTAGTTTTTTTAGTCCCTTCGAGTTCTTTGCTTCCAGAAGAGTCATCAATTTTCTTTGAAAGCTA CACCAATTTATACACCCTTGTAACATTTTCTCTATTTCTTCTAAACTTGTGCATATATGTTGCTGATTTTCTACTGTTCC TACATGGACAACCTATGTATAATTTTCTTTTTGTAATAAAGCAGATTGGTATTATCCAATGTTTCTTTTAAGAATGAGCA TTAAAGACAAGATGCTTTGAAAGTGATTCTTTGCTGTGCAGACCAAATTATCTTAGATCATTTTTACCTTGTAGCCTATT AGCCTCTTGAGATTCTTTGTTTGTATCCATTGTTAGTTTCATACCATGTTTATGTGAATTAGGTTCATTTTTATTTAAAA AGTTATGTCATCAGTGGTATAGAGTATTACAAAATTGTATATTTTTTAACACTGTGACCTTCAGGAATGAAATTGGGTAT GATGGATGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTACATAAAGGACTACCTGGATGCAAGTGAACCTTACTT TGCTGTCGGAGAATACTGGGATTCCCTTAGTTATACATATGGTGAAATGGATTGTAATCAAGATGCTCATAGGCAGAGGA TAGTTGACTGGATCAAAGCCACCAATGGTACAGCTGGTGCATTTGATGTTACAACAAAAGGGATTCTGCACTCTGTAAGC ACTAACTTGTACATTTTTTTTACAACATTTGTTCAAATATAAATATTCCATATACCTCTTACAAAGTCAAGTGTGCTTTG TAGCTATCACGATTTCATATTTTTGTTCGAATTTGTCCACATTTTCTTTTTTGGAGTAAAGATAGTATACTACTAGGTTT CTTGAGTTTTTTTCATAAGAAAACACAATGTGCATGCTGTGATGTGATTGCTTTCCAATCCTGTCTATTTAGGGTGTGTC TGTTTTAACGTTTTCATCCGTTAGCACAAGTTCCAATGCAGAAAAACATCGTTTTTGATGGACAAAATCTGCTTTTACTG AATGAAAATTGGCTCTTGGATTAACTAAATGTGAAATGTGTTTTTACTTTCATTTCAACTATAACTCAAACATACTTAGT TCTTTAATCTTGGAATGTTAAATTCTTTGCCATTATAGGCACTGGAAAGATGTGAATATTGGAGGTTGTCAGATCAGCAG GGAAAACCCCCTGGTGTTGTAGGGTGGTGGCCATCTCGTGCTGTTACTTTTATAGAGAATCATGACACTGGCTCTACCCA GGTTTGAACTTCTTTCTAAAAATATCATGATACAATTTATAATTTTTATTAGGTTTAATTTCTTTGAAAGAGTCTATAAT GTAGAAATGGTTTATTCATTATTTTCTCTTGCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGGAAGGATATGCTT ACATTCTTACTCATCCAGGAACCCCATCAGTGTTTTTTGACCACATTTTCTCTCATTATAAAAATGAAATAGCAAGTCTT GTATCTTGCAGGAAGAGGAACAAGATCCACTGCAGGAGTACAGTAAGTTTTCAGAATTTTGTCCTTGATACTAACCAGTA CTATGTACTCAATATTTTCTTGGTGTTCGATATGGAAACTAATTGATACCATATGCATGGTAATATTTTCATGATTTCTT TAATCAAACTGTGAATGTGTTCTTTATATGTTCATTGGCAAATTGATGTAATGTTCTAAGGTTGATAGTGTGGGAGCGCA CTAACCTTTCCTCTTTCATGCTTAAGGTTCAAATTTGTAAAGCAGAAAGGGATGTTTATGCAGCCATGATTGATGAAAAA ATTGCTATGAAGATTGGACCTGGACATTTTGAACCACCTACTGGCTCCCACAGATGGTCCTTAGCAATTGGGGGAAGAGA CTATAAGATTTGGGAAGCATTATAATATAATGAAGTACCTTACAAGTGTGTGTATATATATGGTCACTGGTAAATCCTCC CCTTTTACCTTGCTGAAGAAGCAAGTTCTATTCAAGAATAGGTTGGGGTATTCAGATGGTGGCAGGGCAGGCTCCAATTT GAAGTGAGTTGTGCCACGCTAGCTGTTGCTTAATGTTAGCATTTCAGCCAAATGTAGGTCCTCATTTGGAACATGAAAAA TGTGGATCCCTTAAAGTCAGAAAATGAGTTGTATCATACATACTATATATACAAAGCACATGGTTTTCAGATATTGGAAA GATAGATTGTGTGTATGTTTGGGTCTGCGTTTCCACACATTGGACGTGCGTTTCCTAATGCTCCTTATAGCTCTAGGAAA ACACACGTATTTTCGGCCTCGAACACATATTCAAACGGACAACGGACCCTGTATCTGTTATCCAAAAACGGGCACTGATG TTGAATATTTTTT
CDS sequence (LotjaGi2g1v0308200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTGTTGTATTATTTCCTCAATGATAGAGAATTTAGGGCAGATGCCTAAAATGTTCCTCAAGTCAAAATCAGGTCA GGATGGTAGCAGCAAAACCAGAGATCCAAAACAAGAAAATACTCAACCAGAAGGTTTCTATGTAGAAATTCCTATTACAA AGGAGGTTTCAATTAATAACTTCATCCGTGTCTCAATTAAGAAATGCTTTGAGTCTGAGGCAGTTAAGAACCTTTTATGT TTGGAAACGGATCTACCTGGAGATATTGTTCTTCACTGGGGAGTTTGCAGGGATGATTCAAGAAAGTGGGAAGTTCCACC TGCCCCTTATCCGCCAGAAACAATAACATTTAAAGACAAAGCTTTGAGAACTCGATTACAGCCAAGAGGCAGTGGAAAAG GATCTTCAGTACTAATCACTTTAGGAGAAGAGTTTTCAGGGTTTCTTTTTGTTCTTAAGCAAAATGAAAAGACTTGGTTC AAGCAAATGAGAAACGACTTCTATATCCCCCTCTCAAGTTCAGGTAGCTTGCCTATTGATGGCAACAGGGAGGATCAATC AGGTGTGCAGAGGGAAGCGGCTGAAGAGGCAAGTCAAGGGACTTCTTTCTTTTCATTTACTGATGGAATTATCAATGAAA TAAGGAATTTGGTGACAGACAATTCCTCTGAGAAAAGTAGAAAGACAAAATCCAAAAAAGCACAAGAAAGCATTCTTCAA GAAATTGAAAGACTGGCTGCGGAAGCCTATATTTTCTTCAAAACCTCCATTCCATATTTCTCAGAGGCAACTATTGCAGA ACCTGAAGCACCTATTGCGGAACCTGAAGCTGCATCTGAATCAGAGGCACTGGCTCTGGATCCAGAAATATGCTCAGGGA CAGGCACCGGATATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATAAAACTGGAAGATGGTACATGGAGCTTAAG GAGAAAGCTTCAGAACTAGCATCACTTGGTTTTACTGTGGTTTGGCTACCACCACCTACAGAGTCTGTGTCTCCTGAAGG ATACATGCCAAAGGATTTATATAATTTGAATTCCAGATATGGGAACACTGATGAACTGAAAGATTTGGTGAAACGACTTC ATCAAGTTGGCATTAGAGCTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTGTCAGAATCAGAATGGTATTTGG AACATATTTGGAGGTCGTCTTAACTGGGATGACTGTGCAGTTGTTGCTGATGATCCACATTTTCAGGGGAGGGGTAACAA CAGTAGTGGAGATAATTTTCATGCTGCTCCAAACATTGATCACTCACAGGAATTTGTGAGAAAGGATCTCAAAGAATGGT TATGCTGGTTGAGGAATGAAATTGGGTATGATGGATGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTACATAAAG GACTACCTGGATGCAAGTGAACCTTACTTTGCTGTCGGAGAATACTGGGATTCCCTTAGTTATACATATGGTGAAATGGA TTGTAATCAAGATGCTCATAGGCAGAGGATAGTTGACTGGATCAAAGCCACCAATGGTACAGCTGGTGCATTTGATGTTA CAACAAAAGGGATTCTGCACTCTGCACTGGAAAGATGTGAATATTGGAGGTTGTCAGATCAGCAGGGAAAACCCCCTGGT GTTGTAGGGTGGTGGCCATCTCGTGCTGTTACTTTTATAGAGAATCATGACACTGGCTCTACCCAGGGTCATTGGAGATT TCCCAGTGGAAAAGAAATGGAAGGATATGCTTACATTCTTACTCATCCAGGAACCCCATCAGTGTTTTTTGACCACATTT TCTCTCATTATAAAAATGAAATAGCAAGTCTTGTATCTTGCAGGAAGAGGAACAAGATCCACTGCAGGAGTACAGTTCAA ATTTGTAAAGCAGAAAGGGATGTTTATGCAGCCATGATTGATGAAAAAATTGCTATGAAGATTGGACCTGGACATTTTGA ACCACCTACTGGCTCCCACAGATGGTCCTTAGCAATTGGGGGAAGAGACTATAAGATTTGGGAAGCATTATAA
Protein sequence (LotjaGi2g1v0308200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCCIISSMIENLGQMPKMFLKSKSGQDGSSKTRDPKQENTQPEGFYVEIPITKEVSINNFIRVSIKKCFESEAVKNLLC LETDLPGDIVLHWGVCRDDSRKWEVPPAPYPPETITFKDKALRTRLQPRGSGKGSSVLITLGEEFSGFLFVLKQNEKTWF KQMRNDFYIPLSSSGSLPIDGNREDQSGVQREAAEEASQGTSFFSFTDGIINEIRNLVTDNSSEKSRKTKSKKAQESILQ EIERLAAEAYIFFKTSIPYFSEATIAEPEAPIAEPEAASESEALALDPEICSGTGTGYEILCQGFNWESHKTGRWYMELK EKASELASLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNTDELKDLVKRLHQVGIRALGDAVLNHRCAHCQNQNGIW NIFGGRLNWDDCAVVADDPHFQGRGNNSSGDNFHAAPNIDHSQEFVRKDLKEWLCWLRNEIGYDGWRLDFVRGFWGGYIK DYLDASEPYFAVGEYWDSLSYTYGEMDCNQDAHRQRIVDWIKATNGTAGAFDVTTKGILHSALERCEYWRLSDQQGKPPG VVGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMEGYAYILTHPGTPSVFFDHIFSHYKNEIASLVSCRKRNKIHCRSTVQ ICKAERDVYAAMIDEKIAMKIGPGHFEPPTGSHRWSLAIGGRDYKIWEAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 21 | 44 | 24 | - | – | |
| PANTHER | 193 | 688 | 496 | 2.1E-212 | – | |
| PANTHER | 193 | 688 | 496 | 2.1E-212 | – | |
| SUPERFAMILY | 298 | 616 | 319 | 1.26E-69 | ||
| Gene3D | 299 | 632 | 334 | 2.3E-126 | – | |
| SMART | 299 | 628 | 330 | 2.0E-43 | ||
| CDD | 300 | 639 | 340 | 4.61037E-177 | – | |
| Pfam | 326 | 579 | 254 | 9.7E-17 | ||
| PRINTS | 377 | 388 | 12 | 8.6E-5 | ||
| PRINTS | 463 | 474 | 12 | 8.6E-5 | ||
| PRINTS | 567 | 579 | 13 | 8.6E-5 | ||
| SMART | 629 | 689 | 61 | 9.2E-29 | ||
| Pfam | 630 | 688 | 59 | 2.4E-22 | ||
| Gene3D | 633 | 690 | 58 | 6.0E-17 | ||
| SUPERFAMILY | 633 | 688 | 56 | 3.96E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Alpha-amylase activity | Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi2g1v0308200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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