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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0316500 |
Transcript ID | LotjaGi2g1v0316500.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|I1JC00|I1JC00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0316500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79166169..79170464) extracted from Lotus japonicus Gifu genome v1.2.
GGACATTAAAGTCCAAATCAGAGTTTCTGAAACCCAGAAGATTAGTAAGATCACAGTGTTGTTTACTGTACTGAATGGGT GAAATAAATCTCTGTGCCTCACTGTTGTACGTCTTCACTTTCAGTCACACCACCTGACAGGCTCAATAATTAAGCCAGTT GCAATAAAATACAATGTACTAAGAAATAGAAATTTTCATTTGGCTTCTTCTGACTAGCAGTTTAATAAGCCAATTAAAAC TTATTAAGCAACATTCGTCACTCTCATTCTTATATTAAGAATTTCATCTGTTACTCATGTCATTCCTCTATATGGTAATT AAAATTTCCTCACATTTTCAATGTTGCTATCATTCCAGCTCTCCACTATGGACCACACATTTTCTTGGTCCATACTAAAC AAGGACGTATTTAGAAGGACATAACCTTCTCCTCTCAGGGAACCACTCACAAAATTAGAACCAGAGAGCTTTCAATGATG AAGCACAGAAAAATAAACCAGGAAGGAGTCCTCAGAGTCACCATGAAAGGTCTCAAGATGAGAACTGTTCTAAAAGCAGT TAGAAACCATTCCCTTTTCCTCATCAAGCAACTTCTTCCTGGTTTCATCTTTGCACTGCTTTGTTTATACTTTTATCCTC TTTCACTCACTTCATATCCAAGAACTGAGCTTCATCATTCCAGCCATATCATCACCTGTATTTCCTCCATTTCTTCTGGT TCTCCTCCTCTTCCTGAGCTTCCTTCCACAGAAACTGAGCTTTCTGTTTCTTACCAAATCACCAACCACTCCACTCTTTC GGGCTCTCCCACTGAACCTGATATTTCACTTACTCCATCAACTCCTCCAGTAATTGTGCTTCCTCATTCCAACAACAACA CCAACTACTCCTCTGTTTCTGAGTCTCCCCCTCTGTTGCTTACTTTATCTCCACCAACTGAGCTTCCTCTTCCTCTCATC ATCACCAACAACTCCTTTATTCCTGCTTCTACCCCTTCTCCTCCTCCTACTCCACCTCCATCTTATTCAGGTAAACATAT GCAAGCATAATTTTCTCTTGTTAATTAACACTATTATAATGTTAGAAGTAAGGCATGTAGACTTTTTCTGAACTTGTCAA ATTATGCAGCAGGTATTTTATTGTCAGAGAAAGACAAAGATCTCCCTCCTCCGCCTCCTCTTTATTCAGGTATATATATA TATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGCATGCATAATTTTGTCTTTAATAATA TTATGAAAAATGCTTTCTTGACACCATGGAAAGGGGATGGAGGGAAAGGGGATGGATGGATGGAGGGAAAAGGGATGGAG GGAAGTGAAAAATAGAAAGAAAAATAGAGGAAGTGTGAGATGTGGTCCAATTGGAAATTACCCAAGGTAAATTTGGGCCA CTTAAAAATTAGAGTGATTTTATCCAATGTAAATTTTGTGTGATTTAGATAATTCCTTAAAAAATAAGAGAGGGATAGAA AAAAAATCAAGTGAAAATCAAGTGGAAGAAATGGGGTGTGAATGAGCAAAGGTTGTAATATTCTATTTGGATTAGTGCAT TTTTTAATACACTGTAAAAACTCACACACAATGAACAAAAACAACTTAACTTACTTTTTGTGGCTGACTTCGTGATTTTA GCTTCTCCGTGTTTTCTGACCTTGTATGTGAACATGCACTACTTGGATATATGCACATTAGAAATTCACAGTAAAATCAA AATCATTGTAGACAACCCCAAAAGAAAAGAGGAGTTGCTTTTATCCACCGTGATTTTGACTCCCTATTTTTTTTTCATCC TATAACCAAGCTCTCACCATATAAATATATTTTTCTTAAAATCAATTATGGTCAGAAGTTTCTACCTTTTATCCTCAAAA GTACACAAATTTCCAAACATACCCTTAGAATTTTAGAATTGCAAGTTTTTTTTTTCTCAACTACAAATTATTAGCAGCTA GTAAGTTTAACCTATTGGTATATTTTGCAGTAAAGGGAAAAGTTTATGAGAAGCAATGTGACTACTTTAATGGCAAATGG GTTCGTGAGAAGAAAGGCCCTTTGTACAATGGTACCACTTGTGGTGTGATCAAAGAAAGCCATAATTGTATGGCTAATGG GAGGCCAGACTCTGAATATCTTTATTGGAAATGGAAACCAAGAAGGTGCCATCTTCCGAGGTTTAATCCAGAGGCTTTTC TCCAACTCATCAGGAACAAGCATGTATCGTTTGTTGGAGACTCTCTAGCTAGGAACCAATTAGAGTCCCTTATTTGCATG TTGTCCACTTTTGAAACACCTAAATTCATCTATAGAGGTATAGGCTGGTGGTATTTTCCTTCTTACAATGCAACCTTATC ATCATATTGGGCCCCATTTCTTGTGCAAGGTGTTCAAAGGCAACTAAGAGGGCCAGGACCACGTCATAACACAATGCATT TGGATCAAGTTAATGAGAATTGGGCAAAGGATGTGGGTGAAATGGACTTCATTGTGCTAGCATTTGGGAATTGGTTTGTG GAGGTTCCTTCAATTTACCATGAGGGTGATTCAGTTTTGGGTTGCCTAAACTTACATCGTCCCAATTGCACGGAAATTGG TTATTATGTGCCAATAAGGAAGGCTTTGAGGACTGCTCTTAATAGTATAATTGAGAGGAAAACAGTGAAAGGAGATGGAA TTGGTGTCATTGTGAGAACATTCGCACCTGTTCATTTTGAAGGTTCTTGGGATAAAGGAGGTACTTGTTCAAGGCTTACA CCATATAGAGGGAAGAGGAAGCTTGGAAAGAATGATGCCGAGATTAGAAGAATTGGATTAGAAGAAATGCAAAAAGCCAA GGACAAAGCCAAATATTTTGGAAGGTATTTTAAGATTAAGGCATTAGATGTAACCAAGTTATCACTAATGAGGCCAGATG GGCATCCAGGTGCTTATGTGAGTCCAAATGCATTTTCTAAAGGGGTGACAAAGGTTGTGCATAATGATTGTACCCACTGG TGCTTGCCAGGACCTATAGACACATGGAATGAGATTTTCATGGAGATGGTGAAAAAGTGGGAGCAATAGCTGATGATTGA TGAGTGAGACAATTCCTCTTATTACATTAATCTTTCCATGTACAGGTTTTTATTTTGCTTACCTCTTCTTCCATAATGAA ATATGAGTGTATTTAATTTGGACACAAATTTTAGTTATAGATTTATTTGATCAATTTTAGTAAATAAGTTTATCACACTA GTTTGTGGTATTATTCAAGACTCAAGAGTGTCACACTGTCACTTTGAAGTAGTGTTAAAGCTTGCACTACTAAATGCTGA TTAGTGTAATGATGATTTCCGGATATTGTATTTCATTGTATCTAAATTATAATAAAAAGAATCTTCTGTTCCTATTCTGA CAAAAGGGATGGGGAATATCAAAGTCATCACTAGAGGTTCACGTTTCCTACATTCAAGCAGATCTTTGTTTGCATTCTAT CAATTTGCTATTTATATATATGGATGTGGCGTGATAATTCTTGCAATTTGCGTAGTAAACTTGTCATAACATAATGTACC ATTCCTCCTTCTCCTCGAAATGTTTATTTTCTCCTCTTCATGTATTTTGATTATAAAAAAAATGTACCATTCCTCCTGCC AAAGTTATCACCAATAAAATATACCATCAAATATGCGAAATAAGGGAATATAGGATGAATAATTAATATTTTAGTACATG GATGGACTAATAAATAGATACAGCAAGAGGCAAGATTGTAAAAATATTCCCAAAATTAGTGGTTATAATTGATAGTGATA AAAAGATTTTTTATTATAAATACACCTTCTCTCACTCATCCAAACCACTTCACTCCAAACTCTACGATGATTCCACCCAC AACCACCCTATTGTCATTCAAACAACGACCCGAAGAGTGGGGGCAGTATGGTCCCTCTTCCACATCGTCGCCATCAACGT CGTGATTCCACTCTTCCACACTATTGTCAACACAACGGTACATGAGTTCATCTGAGAGAAAGAACTGAAGAGAAGGAAGA AGTCACTTCTTATTAGAGAGGAGAGCAATAATTGTGAAGCACAAATAATCAACCTTCATCGGTTCCTACGGTGCCTGAAA ACGCAAATGCATAGAGATGAGAAGTTGTCGGTTGAAGAGCTTTGATGTAGATTGTAAATACGGTTCTCGCACAGGACAGA TGTCGAACGCGATGCTGGGACAACCGGTTCGATAACTGACTAACAGTAACAAAACC
CDS sequence (LotjaGi2g1v0316500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGCACAGAAAAATAAACCAGGAAGGAGTCCTCAGAGTCACCATGAAAGGTCTCAAGATGAGAACTGTTCTAAA AGCAGTTAGAAACCATTCCCTTTTCCTCATCAAGCAACTTCTTCCTGGTTTCATCTTTGCACTGCTTTGTTTATACTTTT ATCCTCTTTCACTCACTTCATATCCAAGAACTGAGCTTCATCATTCCAGCCATATCATCACCTGTATTTCCTCCATTTCT TCTGGTTCTCCTCCTCTTCCTGAGCTTCCTTCCACAGAAACTGAGCTTTCTGTTTCTTACCAAATCACCAACCACTCCAC TCTTTCGGGCTCTCCCACTGAACCTGATATTTCACTTACTCCATCAACTCCTCCAGTAATTGTGCTTCCTCATTCCAACA ACAACACCAACTACTCCTCTGTTTCTGAGTCTCCCCCTCTGTTGCTTACTTTATCTCCACCAACTGAGCTTCCTCTTCCT CTCATCATCACCAACAACTCCTTTATTCCTGCTTCTACCCCTTCTCCTCCTCCTACTCCACCTCCATCTTATTCAGTAAA GGGAAAAGTTTATGAGAAGCAATGTGACTACTTTAATGGCAAATGGGTTCGTGAGAAGAAAGGCCCTTTGTACAATGGTA CCACTTGTGGTGTGATCAAAGAAAGCCATAATTGTATGGCTAATGGGAGGCCAGACTCTGAATATCTTTATTGGAAATGG AAACCAAGAAGGTGCCATCTTCCGAGGTTTAATCCAGAGGCTTTTCTCCAACTCATCAGGAACAAGCATGTATCGTTTGT TGGAGACTCTCTAGCTAGGAACCAATTAGAGTCCCTTATTTGCATGTTGTCCACTTTTGAAACACCTAAATTCATCTATA GAGGTATAGGCTGGTGGTATTTTCCTTCTTACAATGCAACCTTATCATCATATTGGGCCCCATTTCTTGTGCAAGGTGTT CAAAGGCAACTAAGAGGGCCAGGACCACGTCATAACACAATGCATTTGGATCAAGTTAATGAGAATTGGGCAAAGGATGT GGGTGAAATGGACTTCATTGTGCTAGCATTTGGGAATTGGTTTGTGGAGGTTCCTTCAATTTACCATGAGGGTGATTCAG TTTTGGGTTGCCTAAACTTACATCGTCCCAATTGCACGGAAATTGGTTATTATGTGCCAATAAGGAAGGCTTTGAGGACT GCTCTTAATAGTATAATTGAGAGGAAAACAGTGAAAGGAGATGGAATTGGTGTCATTGTGAGAACATTCGCACCTGTTCA TTTTGAAGGTTCTTGGGATAAAGGAGGTACTTGTTCAAGGCTTACACCATATAGAGGGAAGAGGAAGCTTGGAAAGAATG ATGCCGAGATTAGAAGAATTGGATTAGAAGAAATGCAAAAAGCCAAGGACAAAGCCAAATATTTTGGAAGGTATTTTAAG ATTAAGGCATTAGATGTAACCAAGTTATCACTAATGAGGCCAGATGGGCATCCAGGTGCTTATGTGAGTCCAAATGCATT TTCTAAAGGGGTGACAAAGGTTGTGCATAATGATTGTACCCACTGGTGCTTGCCAGGACCTATAGACACATGGAATGAGA TTTTCATGGAGATGGTGAAAAAGTGGGAGCAATAG
Protein sequence (LotjaGi2g1v0316500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKHRKINQEGVLRVTMKGLKMRTVLKAVRNHSLFLIKQLLPGFIFALLCLYFYPLSLTSYPRTELHHSSHIITCISSIS SGSPPLPELPSTETELSVSYQITNHSTLSGSPTEPDISLTPSTPPVIVLPHSNNNTNYSSVSESPPLLLTLSPPTELPLP LIITNNSFIPASTPSPPPTPPPSYSVKGKVYEKQCDYFNGKWVREKKGPLYNGTTCGVIKESHNCMANGRPDSEYLYWKW KPRRCHLPRFNPEAFLQLIRNKHVSFVGDSLARNQLESLICMLSTFETPKFIYRGIGWWYFPSYNATLSSYWAPFLVQGV QRQLRGPGPRHNTMHLDQVNENWAKDVGEMDFIVLAFGNWFVEVPSIYHEGDSVLGCLNLHRPNCTEIGYYVPIRKALRT ALNSIIERKTVKGDGIGVIVRTFAPVHFEGSWDKGGTCSRLTPYRGKRKLGKNDAEIRRIGLEEMQKAKDKAKYFGRYFK IKALDVTKLSLMRPDGHPGAYVSPNAFSKGVTKVVHNDCTHWCLPGPIDTWNEIFMEMVKKWEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 32 | 32 | - | – | |
Phobius | 33 | 54 | 22 | - | – | |
TMHMM | 34 | 56 | 23 | - | – | |
Phobius | 55 | 544 | 490 | - | – | |
PANTHER | 149 | 542 | 394 | 7.4E-165 | – | |
PANTHER | 149 | 542 | 394 | 7.4E-165 | ||
Pfam | 193 | 246 | 54 | 4.2E-22 | ||
Pfam | 247 | 538 | 292 | 3.8E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0316500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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