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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0320200 |
| Transcript ID | LotjaGi2g1v0320200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase non-catalytic protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|P92990|PGL3_ARATH Polygalacturonase 1 beta-like protein 3; TrEMBL-Plants: tr|I1JC23|I1JC23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0320200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79512698..79515635) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCAAGGGCTATAAATACCCTCCTATCCCCATGCGTATTGTTCATGCAAACTGTCCACCAGATCAAGGTAAATCCTCT TTGCTCTTCAAAAAGTCCAATCTCCACTCCAATTTCAAATAGTAGTACTAGTTTTTTGCCCCTTCCTCACCCTCTTTTAT CTCTATTGACTTATTGCATTTGTTTCTATTACTCTCTGGTATCTACATTGCTCTCTCACTCTCTTAGTTCACTCAATTTT TTGTTTTGCATTATTTGTATTGGTTCACTCCCTATTAATTTAATGTTGTTACAACTAATTAGTGTTACTATTGTTTTGTT GTCAATTGAATTTGCAGTAAATTCTCAGCATTCACCCATAGGAGAGGATGGAACATAACATTTCCACTTGATATAAAGAT TTGGATACAACACAAACCACTCAACCAACATTCTCAACTCTTTGGAGGAAAACTAGTACTACTATGAACAAACAACACAC CTTCTTCTGTTTCTTTATCCTCTTCTTCTTCTTCTCAAATCTCAATGTAAGGACAAGTAATGTTTCAATTTTTTGAATTG TTTTACACCACCCATTGTAGTTTCTAAAATGGGTGTTCATGTTCATCAATGCAGGTTGGTTCCGCCGCCGATGCGGTGGC CGGAGACAAAAATCCCTTCACCCCGAAGGCCTATGTGGTGCGGTATTGGGACAAGGAGATCCGCAACGGGCTGCCCAAGC CGTCGTTCCTGTTGACGAAAGCGTCGCCGCTGAGCGCAGTGGATTCCGCCTCGTTCGCCAAGCTAGCTGCCGGCGGCGCA CTCTCCACGCGCCTGCCGGAGTTTTGCTCCGCTGCGAACCTCCTCTGCTTCCCGGAGGTTGGCCCCAGCCTCGAGAAGCA CGACAAGGACGCCAGCTTCGCCGTGTACCGGGACAAGAACTTCACCAACTACGGAACGGGTCGACCCGGCGGGGTCGACT CGTTCAAGAACTACTCCGACGGGGAGAATATTCCGGTGAACGATTTCCGCCGCTACAGCCGCAACTCCGCCGGACACAAG GAGAGTTTCCTCAGCTATGGCTCCGACGGCAACGTGGTGGACCAGAGCTTCCACACCTACGCCGCCGGAGCCACCGGCGG CGCTGGCGAGTTCAAGCGCTACTCCGACCAAGTCAACGTCCCTGACCTCCGATTCTCCTCCTACTCCGACGACGCCAACG GGAGAACCCAATCGTTCACCGCCTACTCAGAAAACGGCAATGCCGGAGACCAATCGTTCACCAGCTACGGCAAGAACGGA AACGGCCCCACCGACGAGTTCACCTCCTATGGAAAAAGCTCCAACGTCGTCGGGTCCGGATTCTCCAACTACGCCGAGAA CGCCAACGCCGCCAACGACACGTTCAAAGGCTACGGCATCGACATGAACAACCCCACCAACACGTTCACCAACTACGCCT CCGGCGGCAACGGCGCCACCGAGCATTTCACCAACTACCGCGACCAAGCCAACGTCGGCGCCGACTCCTTCACCTCCTAC GCCAAATCCGCCAACGCCGCCGATGTCGGTTTCACCAACTACGGCAAATCGTTCAACGAAGGAACCGACACATTCACCGG CTACGCCAAAAGCGCCAAGGGCGAAACCAAGGTGGATTTCAAAGGCTACGGCGTCAACAACACGTTCAAGGAGTACACGA AAGACGGTGTATCATTCTCCCAATACACCAACGTGAGCACTTCACTGGAAAATCAGAAGCTGCTGAAAACTCCGGCGAGT GGCAATTTGGTAAAAAGATGGGTTGAACCGGGCAAATTCTTTAGAGAGAAAACACTGAAAGAAGGAACTGTTATCCCTAT GCCAGACATTAGAGATAAAATGCCTAAAAGGTCGTTTTTACCCCGGAGCATTCTCGCGAAATTACCATTCTCAACCTCGA AGATTTCTGAGCTGAAACAAATGTTCAAAGCTTCTGATAATGGCTCCATGGAGAAGATGATGAGGGATTCACTGCAAGAG TGTGAGAGAGTCCCTAGCCGGGGTGAGACCAAGCGGTGTGTGGGGTCCATTGAGGATATGGTTGATTTCGCCACCTCTGT TCTCGGCCGCAATGTGGTGGTGAGAACCACCGAGAATGTAAACGGGTCGAACAAGAAAGTGATGGTGGGTCGGGTTCAAG GGGTCAACGGTGGGAAGGTGACCCGGTCGGTTTCTTGCCACCAGAGCTTGTTTCCTTATCTTCTCTACTACTGTCACTCT CTTCCTAAGGTTCGGGTCTACCAAGCGGATCTTCTTGACCCGAATACCAAGGCCAAGATCAACCATGGTGTTGCTGTTTG TCATGTGGATACCTCTGATTGGAGCCCCACCCATGGAGCTTTTCTTTCTCTCGGGTCGGGTCCGGGTCGGATTGAGGTTT GTCACTGGATCTTTGAGAATGATATGAGCTGGGCTACTGCTGATTGAGGAAAGAAAAGAAACAAGATCAATCAATTCTGC TAAGAAAATTTAGCAGTTTATTGCTATTCCACTCAAGAACAATTTCTTTCTAATTTTCAAAATTTTAAGCAATGTAATTT TTTACTTTTACCTCTTATAGGAAAGCTTAAGTTATGGCTTTTACTTTAGGAAGAACAAGGTATATTCTATATCATGATTA TTATTACTATTATTATTTACTCAAAATCATCATTAGCTTCAACTTCAAGTGTTTATTGTGGATGTTTTTTGCTCGAACAA GATTGCCTCCAAAGGAGGACACCTGTCTCAAACCAAAAAAAATTCAAGTGTTTATTATGGCTTGGCTTCCCTGATGATTG GAGTGTTACACTGATGAGTTCACTGATAGTGGTATTGGTTAGTTTTTTTGTTTGTGTATGTTTTGATTCAATTTATTATT TTTTGGTTGGACAAAAGTATCTCCACAACCTACATGCCGTCATGAGATTAATTCACTC
CDS sequence (LotjaGi2g1v0320200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAACAACACACCTTCTTCTGTTTCTTTATCCTCTTCTTCTTCTTCTCAAATCTCAATGTTGGTTCCGCCGCCGA TGCGGTGGCCGGAGACAAAAATCCCTTCACCCCGAAGGCCTATGTGGTGCGGTATTGGGACAAGGAGATCCGCAACGGGC TGCCCAAGCCGTCGTTCCTGTTGACGAAAGCGTCGCCGCTGAGCGCAGTGGATTCCGCCTCGTTCGCCAAGCTAGCTGCC GGCGGCGCACTCTCCACGCGCCTGCCGGAGTTTTGCTCCGCTGCGAACCTCCTCTGCTTCCCGGAGGTTGGCCCCAGCCT CGAGAAGCACGACAAGGACGCCAGCTTCGCCGTGTACCGGGACAAGAACTTCACCAACTACGGAACGGGTCGACCCGGCG GGGTCGACTCGTTCAAGAACTACTCCGACGGGGAGAATATTCCGGTGAACGATTTCCGCCGCTACAGCCGCAACTCCGCC GGACACAAGGAGAGTTTCCTCAGCTATGGCTCCGACGGCAACGTGGTGGACCAGAGCTTCCACACCTACGCCGCCGGAGC CACCGGCGGCGCTGGCGAGTTCAAGCGCTACTCCGACCAAGTCAACGTCCCTGACCTCCGATTCTCCTCCTACTCCGACG ACGCCAACGGGAGAACCCAATCGTTCACCGCCTACTCAGAAAACGGCAATGCCGGAGACCAATCGTTCACCAGCTACGGC AAGAACGGAAACGGCCCCACCGACGAGTTCACCTCCTATGGAAAAAGCTCCAACGTCGTCGGGTCCGGATTCTCCAACTA CGCCGAGAACGCCAACGCCGCCAACGACACGTTCAAAGGCTACGGCATCGACATGAACAACCCCACCAACACGTTCACCA ACTACGCCTCCGGCGGCAACGGCGCCACCGAGCATTTCACCAACTACCGCGACCAAGCCAACGTCGGCGCCGACTCCTTC ACCTCCTACGCCAAATCCGCCAACGCCGCCGATGTCGGTTTCACCAACTACGGCAAATCGTTCAACGAAGGAACCGACAC ATTCACCGGCTACGCCAAAAGCGCCAAGGGCGAAACCAAGGTGGATTTCAAAGGCTACGGCGTCAACAACACGTTCAAGG AGTACACGAAAGACGGTGTATCATTCTCCCAATACACCAACGTGAGCACTTCACTGGAAAATCAGAAGCTGCTGAAAACT CCGGCGAGTGGCAATTTGGTAAAAAGATGGGTTGAACCGGGCAAATTCTTTAGAGAGAAAACACTGAAAGAAGGAACTGT TATCCCTATGCCAGACATTAGAGATAAAATGCCTAAAAGGTCGTTTTTACCCCGGAGCATTCTCGCGAAATTACCATTCT CAACCTCGAAGATTTCTGAGCTGAAACAAATGTTCAAAGCTTCTGATAATGGCTCCATGGAGAAGATGATGAGGGATTCA CTGCAAGAGTGTGAGAGAGTCCCTAGCCGGGGTGAGACCAAGCGGTGTGTGGGGTCCATTGAGGATATGGTTGATTTCGC CACCTCTGTTCTCGGCCGCAATGTGGTGGTGAGAACCACCGAGAATGTAAACGGGTCGAACAAGAAAGTGATGGTGGGTC GGGTTCAAGGGGTCAACGGTGGGAAGGTGACCCGGTCGGTTTCTTGCCACCAGAGCTTGTTTCCTTATCTTCTCTACTAC TGTCACTCTCTTCCTAAGGTTCGGGTCTACCAAGCGGATCTTCTTGACCCGAATACCAAGGCCAAGATCAACCATGGTGT TGCTGTTTGTCATGTGGATACCTCTGATTGGAGCCCCACCCATGGAGCTTTTCTTTCTCTCGGGTCGGGTCCGGGTCGGA TTGAGGTTTGTCACTGGATCTTTGAGAATGATATGAGCTGGGCTACTGCTGATTGA
Protein sequence (LotjaGi2g1v0320200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKQHTFFCFFILFFFFSNLNVGSAADAVAGDKNPFTPKAYVVRYWDKEIRNGLPKPSFLLTKASPLSAVDSASFAKLAA GGALSTRLPEFCSAANLLCFPEVGPSLEKHDKDASFAVYRDKNFTNYGTGRPGGVDSFKNYSDGENIPVNDFRRYSRNSA GHKESFLSYGSDGNVVDQSFHTYAAGATGGAGEFKRYSDQVNVPDLRFSSYSDDANGRTQSFTAYSENGNAGDQSFTSYG KNGNGPTDEFTSYGKSSNVVGSGFSNYAENANAANDTFKGYGIDMNNPTNTFTNYASGGNGATEHFTNYRDQANVGADSF TSYAKSANAADVGFTNYGKSFNEGTDTFTGYAKSAKGETKVDFKGYGVNNTFKEYTKDGVSFSQYTNVSTSLENQKLLKT PASGNLVKRWVEPGKFFREKTLKEGTVIPMPDIRDKMPKRSFLPRSILAKLPFSTSKISELKQMFKASDNGSMEKMMRDS LQECERVPSRGETKRCVGSIEDMVDFATSVLGRNVVVRTTENVNGSNKKVMVGRVQGVNGGKVTRSVSCHQSLFPYLLYY CHSLPKVRVYQADLLDPNTKAKINHGVAVCHVDTSDWSPTHGAFLSLGSGPGRIEVCHWIFENDMSWATAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 6 | 631 | 626 | 0.0 | – | |
| PANTHER | 6 | 631 | 626 | 0.0 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 631 | 606 | - | – | |
| SMART | 414 | 630 | 217 | 8.9E-128 | ||
| ProSiteProfiles | 416 | 630 | 215 | 70.185 | ||
| Pfam | 416 | 628 | 213 | 6.5E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0320200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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