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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004873
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 47 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.562s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0079869.1
n.a. PREDICTED: dehydration-responsive protein RD22 [Vitis vinifera] gi|225430045|ref|XP_002284286.1| chr0 30846699 30852989 +
4 domain predictions
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Lj0g3v0079869.3
n.a. PREDICTED: BURP domain-containing protein 3-like [Vitis vinifera] gi|225430055|ref|XP_002284380.1| chr0 30846699 30851119 +
3 domain predictions
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Lj0g3v0079879.1
n.a. RD22-like protein [Vitis vinifera] gi|54645911|gb|AAV36561.1| chr0 30851960 30852989 +
4 domain predictions
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Lj0g3v0216869.1
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502154756|ref|XP_004509821.1| chr0 110216663 110221447 +
4 domain predictions
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Lj0g3v0255159.1
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502154756|ref|XP_004509821.1| chr0 132473252 132476090 +
4 domain predictions
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Lj0g3v0259959.1
n.a. PREDICTED: dehydration-responsive protein RD22-like [Glycine max] gi|356507867|ref|XP_003522684.1| chr0 135086121 135086285 -
3 domain predictions
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Lj0g3v0326959.1
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502154756|ref|XP_004509821.1| chr0 170925405 170926553 -
4 domain predictions
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Lj1g3v0411530.1
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502133928|ref|XP_004501939.1| chr1 4838608 4841247 +
4 domain predictions
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Lj1g3v0411530.2
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502133928|ref|XP_004501939.1| chr1 4838667 4841247 +
4 domain predictions
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Lj1g3v0415040.1
n.a. resistant specific protein-1(4) [Vigna radiata] gi|24416614|dbj|BAC22498.1| chr1 5111133 5112368 +
3 domain predictions
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Lj1g3v0415080.1
n.a. PREDICTED: dehydration-responsive protein RD22-like [Glycine max] gi|356508653|ref|XP_003523069.1| chr1 5128825 5130031 +
4 domain predictions
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Lj1g3v1815390.1
n.a. PREDICTED: dehydration-responsive protein RD22-like [Glycine max] gi|356508653|ref|XP_003523069.1| chr1 22030780 22031339 -
4 domain predictions
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Lj1g3v1989440.1
n.a. resistant specific protein-2 [Vigna radiata] gi|24416618|dbj|BAC22500.1| chr1 23386586 23389146 -
4 domain predictions
 –
Lj1g3v1989450.1
n.a. n.a. chr1 23386586 23388270 +
4 domain predictions
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Lj1g3v2036410.1
n.a. BURP domain protein precursor [Glycine max] gi|351722000|ref|NP_001235949.1| chr1 23944668 23947457 -
4 domain predictions
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Lj1g3v2036410.2
n.a. PREDICTED: dehydration-responsive protein RD22-like [Cicer arietinum] gi|502124472|ref|XP_004498543.1| chr1 23944668 23947457 -
4 domain predictions
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Lj1g3v3405600.1
n.a. PREDICTED: BURP domain-containing protein 17-like [Glycine max] gi|356517112|ref|XP_003527234.1| chr1 39357020 39358717 -
4 domain predictions
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Lj2g3v1402730.1
n.a. PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like isoform X1 [Cicer arietinum] gi|502169784|ref|XP_004514684.1| chr2 22127518 22129694 -
4 domain predictions
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Lj3g3v3338440.1
n.a. PREDICTED: BURP domain-containing protein 9-like [Cicer arietinum] gi|502149163|ref|XP_004507416.1| chr3 40988207 40991248 -
4 domain predictions
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Lj3g3v3338520.1
n.a. BURP domain-containing protein [Medicago truncatula] gi|357473173|ref|XP_003606871.1| chr3 41023569 41033389 -
4 domain predictions
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Lj3g3v3338530.1
n.a. BURP domain-containing protein [Medicago truncatula] gi|357473173|ref|XP_003606871.1| chr3 41032095 41034267 -
4 domain predictions
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Lj4g3v1709680.1
n.a. resistant specific protein-2 [Vigna radiata] gi|24416618|dbj|BAC22500.1| chr4 24640945 24641688 -
3 domain predictions
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Lj5g3v0642590.1
n.a. PREDICTED: dehydration-responsive protein RD22-like [Cicer arietinum] gi|502124472|ref|XP_004498543.1| chr5 8825258 8827567 +
4 domain predictions
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Lj5g3v0642590.2
n.a. PREDICTED: dehydration-responsive protein RD22-like [Cicer arietinum] gi|502124472|ref|XP_004498543.1| chr5 8825409 8827567 +
4 domain predictions
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LotjaGi1g1v0181700.1
n.a. Polygalacturonase non-catalytic subunit protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|Q40161|GP1_SOLLC Polygalacturonase-1 non-catalytic subunit beta; TrEMBL-Plants: tr|I1JX67|I1JX67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0181700 LjG1.1_chr1 35404158 35407128 +
4 domain predictions
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LotjaGi1g1v0182700.1
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|A0A0B2PRJ8|A0A0B2PRJ8_GLYSO Dehydration-responsive protein RD22; Found in the gene: LotjaGi1g1v0182700 LjG1.1_chr1 35611466 35613740 +
4 domain predictions
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LotjaGi1g1v0182800.1
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|A0A0L9UBK6|A0A0L9UBK6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0182800 LjG1.1_chr1 35628433 35630951 +
4 domain predictions
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LotjaGi1g1v0377600.1
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|I1JX51|I1JX51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0377600 LjG1.1_chr1 85722710 85727993 -
4 domain predictions
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LotjaGi1g1v0377600.2
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|A0A151S7U8|A0A151S7U8_CAJCA Dehydration-responsive protein RD22; Found in the gene: LotjaGi1g1v0377600 LjG1.1_chr1 85723950 85727930 -
4 domain predictions
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LotjaGi1g1v0395600.1
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|I1JX51|I1JX51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0395600 LjG1.1_chr1 88153907 88157057 -
4 domain predictions
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LotjaGi1g1v0399100.1
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|I3T7C8|I3T7C8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0399100 LjG1.1_chr1 88584551 88587550 -
4 domain predictions
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LotjaGi1g1v0570400.1
n.a. BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|C6TE67|C6TE67_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0570400 LjG1.1_chr1 110398919 110401863 -
4 domain predictions
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LotjaGi1g1v0606300.1
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|G7I4D4|G7I4D4_MEDTR Dehydration-responsive protein RD22; Found in the gene: LotjaGi1g1v0606300 LjG1.1_chr1 115111750 115114933 +
4 domain predictions
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LotjaGi2g1v0320200.1
n.a. Polygalacturonase non-catalytic protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|P92990|PGL3_ARATH Polygalacturonase 1 beta-like protein 3; TrEMBL-Plants: tr|I1JC23|I1JC23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0320200 LjG1.1_chr2 79512698 79515635 -
4 domain predictions
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LotjaGi2g1v0320200.2
n.a. Polygalacturonase non-catalytic protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|P92990|PGL3_ARATH Polygalacturonase 1 beta-like protein 3; TrEMBL-Plants: tr|I1JC23|I1JC23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0320200 LjG1.1_chr2 79512804 79515588 -
4 domain predictions
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LotjaGi2g1v0320200.3
n.a. BURP domain RD22-like protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|Q40161|GP1_SOLLC Polygalacturonase-1 non-catalytic subunit beta; TrEMBL-Plants: tr|G7K1D9|G7K1D9_MEDTR Polygalacturonase non-catalytic protein; Found in the gene: LotjaGi2g1v0320200 LjG1.1_chr2 79513189 79513668 -
4 domain predictions
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LotjaGi3g1v0080800.1
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|F6H2Z1|F6H2Z1_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0080800 LjG1.1_chr3 8970624 8973860 +
4 domain predictions
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LotjaGi3g1v0080800.2
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|A0A067LNK9|A0A067LNK9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0080800 LjG1.1_chr3 8970637 8988924 +
4 domain predictions
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LotjaGi3g1v0506700.1
n.a. BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|A0A0S3SDJ5|A0A0S3SDJ5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0506700 LjG1.1_chr3 92394489 92398323 -
4 domain predictions
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LotjaGi3g1v0506700.2
n.a. BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|I1LQ51|I1LQ51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0506700 LjG1.1_chr3 92394489 92398323 -
4 domain predictions
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LotjaGi3g1v0507100.1
n.a. BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|Q9XI99|USPL1_ARATH BURP domain protein USPL1; TrEMBL-Plants: tr|G7JG28|G7JG28_MEDTR Dehydration-responsive RD22-like protein; Found in the gene: LotjaGi3g1v0507100 LjG1.1_chr3 92430167 92435948 -
4 domain predictions
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LotjaGi3g1v0507200.1
n.a. BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|I3SBJ5|I3SBJ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0507200 LjG1.1_chr3 92439113 92441444 -
4 domain predictions
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LotjaGi3g1v0507200.2
n.a. BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|I3SBJ5|I3SBJ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0507200 LjG1.1_chr3 92439179 92441437 -
4 domain predictions
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LotjaGi3g1v0507200.3
n.a. BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|I3SBJ5|I3SBJ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0507200 LjG1.1_chr3 92439358 92440895 -
4 domain predictions
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LotjaGi3g1v0507200.4
n.a. BURP domain protein RD22; TAIR: AT1G49320.1 unknown seed protein like 1; Swiss-Prot: sp|O65009|BNM2A_BRANA BURP domain-containing protein BNM2A; TrEMBL-Plants: tr|I3SBJ5|I3SBJ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0507200 LjG1.1_chr3 92439358 92441408 -
4 domain predictions
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LotjaGi4g1v0165800.1
n.a. Polygalacturonase non-catalytic subunit protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|P92990|PGL3_ARATH Polygalacturonase 1 beta-like protein 3; TrEMBL-Plants: tr|A0A072TRI5|A0A072TRI5_MEDTR Polygalacturonase non-catalytic protein; Found in the gene: LotjaGi4g1v0165800 LjG1.1_chr4 31427593 31430305 -
4 domain predictions
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LotjaGi4g1v0254300_LC.1
n.a. BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|Q8H9E9|Q8H9E9_VIGRA Resistant specific protein-2; Found in the gene: LotjaGi4g1v0254300_LC LjG1.1_chr4 60843890 60844974 -
4 domain predictions
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