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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0321000 |
| Transcript ID | LotjaGi2g1v0321000.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor, putative, expressed; TAIR: AT5G14670.2 ADP-ribosylation factor A1B; Swiss-Prot: sp|O48920|ARF_VIGUN ADP-ribosylation factor; TrEMBL-Plants: tr|A0A1D5RXU1|A0A1D5RXU1_WHEAT Uncharacterized protein; Found in the gene: LotjaGi2g1v0321000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79593005..79595429) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGCTGACATTCACGAAGCTGTTCAGTCGGCTTTTCGCGAAGAAGGAAATGCGAATCCTCATGGTTGGTCTCGATGC GGCTGGTAAGACCACCATCCTCTACAAACTCAAGCTTGGAGAGATCGTCACCACAATTCCTACCATTGGTAAGTTTCTCG ACTCACTTTGCTTTTGTATCATCGTCAATCGTCATTGTTGTTTACCTTTAGGAATATCAATTTGCATTGATTTTCATTGA TTTTCATTATTCGTTTGATCCTTCTTCACATCTTATAGAATTATCCTAAGTATTAGCTTAATTATCTAGGACTAACTGGC CTCGACACTCAAGTGCGTTGATCTCGCAATGATCTTTTACGATGGAATGAAATCAACACATTGCTAAATCTTTGGAAAAA CCTTTAAAATGAAGTTATGCTGGTAGTACTATGAGATGTTGTTTAATATTTTTCAATTAGGACTCAATGTATGTGGCACA TGTCGATCCATGTGCAAATATTCTCCAACTACTATGAGATTACTTTTCACAAACCTTTTTTTTTGTTAGACGTGTGTATT GAATGAGAGAAATGAATTTGGGAACTTCTCATTGCTTGAAACAGAGTATACAAATCAATATATATACATGTCTAAGCTGT CACTACATACAGCTAATTTGTAACTAACTTAGGTGAGTAGTTACAAAATTGATAACTGATTTGCATAACTAACATTTTTA GTGTAGGATGATTGGTTATTGTTGTATCATACATTGCATTATATTGCTCAAATGTTGTAATGCTGTTACATGTATCTGGA TGCATTAATTTTATTGTTTTTGTTTTAGGGTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTCACTGTTTGGGA TGTCGGAGGCCAGGACAAGGTGAAAACTTTGATTCTTATGCTTTCTGAAAAAATTGTGATGTGCAAGATATTTATTGCAT TGCCAGTTTCACTTGTCTCTCCCTGCCACACTACTGAACATTACCTGCCAAGGTGTTTTGGTAGTCAGTAGCTGAGTACT TATGTTTTCTTTTACAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTTATATTCGTTGTAGACAGC AATGACAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTACATAGGATGTTGAATGAGGTACAGTATTTAATTTAGTTTGT CATTGTATGCTTTGTTTTAATCCTCATATTTGGTGGGAATTTATTCACACAGACCAGGTTTGGGATCAAATTTGGGCCAA ACGGAAGGACCTATTAATTAATCAAAACAGAAAGATCTAAGGATCATATTTACCTATGAAGAATGTTCTTTTATGTAGTC TAACTATTCAAAGATTTCTTGTTGAGTTTTGTGGAAAGAATGAACTGCTTTGTTTAAGCTGAAATGTCTGCATGTTGCAC TCTGACTTTGTTATTGGTACTTTTTTCTAGAGCATAATATTCACATGCTCAGTCAGTGTCTCATTATTGATGAAGAGGAA ATCTATTGAACTTATGATGGAAGAATTTCTTTTCATCATTGCTATTGTTAATCACTCTACTCTGTCTTTGCTTGCATATA ACTCTTATTGTATATTGATTTGACTGAGATACATATATCTTTTGGAAGTTGAATGACCAGTTCTTACTGGTCAATCTCTT AGGAAGTTTAGTGCTTTTGATTGAATGGGCGTTTGGGTCAGCTTTAAATCTATCATGTTTACAAGGTTCCTTACAAGAAT CATGGATCTCCTTATTAAGCTTTGTCTTTTGACTTCATGTGATGGAATAACTCTGTTTAGAAACCTTAATTTTAATAATT AATTATCTTTCCAGGATGAGCTGAGAGATGCAGTACTGCTTGTGTTTGCCAACAAACAAGATTTACCGAATGCGATGAAT GCTGCTGAGATTACTGACAAGCTGGGTCTCCACTCTCTGAGACAGCGCCACTGGTAAACATTTTAATAATGAAGCCATTG TACAGTATTAACAGCTATTCCACAATGATTTAACATGCTCTCTGGCTCTTCCAGGTACATCCAGAGCACCTGTGCAACCT CTGGGGAGGGCCTTTATGAAGGTTTGGACTGGCTTTCCAACAACATAGCCAATAAGGTAGCTCAATTTCTTCTCTCCTTG TGCAAGTGTTGATTTAAGAAACTGCATAGTAAATGAAATGGTAGTTGTAAACATTTTTTTTTTAAAAAAAACATACACAT TATTAACGTATTTGTATGCTCCCCTTCCTAGTTCCTAGTTATTTATTAAAAAAAGGAAGAAAGGAAAAACAATCCTGGAA TTACTGAGGTGATCTTTTTTCCTGATTTCTATCATTGCAGGCTTAATGCTTTTTTGGGAGTCTTTTGGATCGATTATTCT GGATGCAGGGGTGAATATTATCTAG
CDS sequence (LotjaGi2g1v0321000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCTGACATTCACGAAGCTGTTCAGTCGGCTTTTCGCGAAGAAGGAAATGCGAATCCTCATGGTTGGTCTCGATGC GGCTGGTAAGACCACCATCCTCTACAAACTCAAGCTTGGAGAGATCGTCACCACAATTCCTACCATTGGGTTCAATGTGG AGACTGTGGAATACAAGAACATTAGCTTCACTGTTTGGGATATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACTCAG GGTCTTATATTCGTTGTAGACAGCAATGACAGGGACAGAGTTGTTGAGGCCAGAGATGAGTTACATAGGATGTTGAATGA GGATGAGCTGAGAGATGCAGTACTGCTTGTGTTTGCCAACAAACAAGATTTACCGAATGCGATGAATGCTGCTGAGATTA CTGACAAGCTGGGTCTCCACTCTCTGAGACAGCGCCACTGTGATTTAACATGCTCTCTGGCTCTTCCAGGTACATCCAGA GCACCTGTGCAACCTCTGGGGAGGGCCTTTATGAAGGTTTGGACTGGCTTTCCAACAACATAG
Protein sequence (LotjaGi2g1v0321000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDIRPLWRHYFQNTQ GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHCDLTCSLALPGTSR APVQPLGRAFMKVWTGFPTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 150 | 150 | 1.2E-118 | – | |
| SMART | 1 | 177 | 177 | 1.6E-15 | – | |
| PANTHER | 1 | 150 | 150 | 1.2E-118 | – | |
| SMART | 1 | 174 | 174 | 4.8E-98 | – | |
| Pfam | 5 | 155 | 151 | 3.5E-61 | ||
| ProSiteProfiles | 11 | 180 | 170 | 19.342 | – | |
| SUPERFAMILY | 14 | 149 | 136 | 1.3E-42 | ||
| TIGRFAM | 16 | 133 | 118 | 3.4E-16 | ||
| Gene3D | 18 | 161 | 144 | 1.9E-56 | – | |
| PRINTS | 19 | 42 | 24 | 1.7E-7 | ||
| PRINTS | 113 | 134 | 22 | 1.7E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0321000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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