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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027417
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4269 results. Now displaying 1 of 86 with 50 rows per page. This search has taken 5.867s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000209.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506581|ref|XP_003522058.1| chr0 65706 71152 +
3 domain predictions
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Lj0g3v0001899.1
n.a. Thymidine kinase [Medicago truncatula] gi|357462597|ref|XP_003601580.1| chr0 567231 568248 +
2 domain predictions
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Lj0g3v0004309.1
n.a. IQ domain-containing protein [Medicago truncatula] gi|357517865|ref|XP_003629221.1| chr0 1538699 1540102 -
2 domain predictions
 –
Lj0g3v0004519.1
n.a. PREDICTED: ATPase ASNA1 homolog [Cicer arietinum] gi|502157463|ref|XP_004510885.1| chr0 1656824 1665707 -
3 domain predictions
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Lj0g3v0004669.1
n.a. DNA/RNA helicase protein isoform 1 [Theobroma cacao] gi|508786331|gb|EOY33587.1| chr0 1717470 1734459 -
3 domain predictions
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Lj0g3v0004669.2
n.a. DNA/RNA helicase protein isoform 1 [Theobroma cacao] gi|508786331|gb|EOY33587.1| chr0 1721323 1734459 -
3 domain predictions
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Lj0g3v0004949.1
n.a. ATP synthase CF1 beta subunit [Lotus japonicus] gi|13518421|ref|NP_084781.1| chr0 1862858 1863481 -
3 domain predictions
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Lj0g3v0011949.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357458247|ref|XP_003599404.1| chr0 4519827 4520190 -
3 domain predictions
 –
Lj0g3v0011959.1
n.a. n.a. chr0 4519827 4520190 -
3 domain predictions
 –
Lj0g3v0012399.1
n.a. Helicase-like protein [Medicago truncatula] gi|357515129|ref|XP_003627853.1| chr0 4682412 4682809 +
2 domain predictions
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Lj0g3v0014269.1
n.a. PREDICTED: ABC transporter I family member 19-like [Cicer arietinum] gi|502114917|ref|XP_004495081.1| chr0 5463570 5468553 -
3 domain predictions
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Lj0g3v0014299.1
n.a. PREDICTED: DNA repair protein rhp26-like [Cicer arietinum] gi|502114921|ref|XP_004495082.1| chr0 5479405 5486022 +
3 domain predictions
 –
Lj0g3v0016119.1
n.a. CTP synthase [Medicago truncatula] gi|357442321|ref|XP_003591438.1| chr0 6270564 6273281 +
2 domain predictions
 –
Lj0g3v0022079.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 8910163 8916990 -
3 domain predictions
 –
Lj0g3v0022659.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 9136319 9142243 +
2 domain predictions
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Lj0g3v0024529.1
n.a. PREDICTED: COBW domain-containing protein 2-like [Glycine max] gi|356559093|ref|XP_003547836.1| chr0 9773259 9781790 -
3 domain predictions
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Lj0g3v0032339.1
n.a. Helicase-like protein, partial [Medicago truncatula] gi|358345447|ref|XP_003636789.1| chr0 10218934 10219344 +
2 domain predictions
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Lj0g3v0033079.1
n.a. PREDICTED: ABC transporter A family member 7-like isoform X1 [Cicer arietinum] gi|502126775|ref|XP_004499432.1| chr0 10474509 10481697 -
3 domain predictions
 –
Lj0g3v0033249.1
n.a. PREDICTED: ABC transporter A family member 2-like [Cicer arietinum] gi|502126773|ref|XP_004499431.1| chr0 10524457 10530928 -
3 domain predictions
 –
Lj0g3v0033289.1
n.a. ABC transporter A family member [Medicago truncatula] gi|357477501|ref|XP_003609036.1| chr0 10534878 10536100 -
3 domain predictions
 –
Lj0g3v0033299.1
n.a. n.a. chr0 10534878 10536100 -
3 domain predictions
 –
Lj0g3v0033309.1
n.a. PREDICTED: ABC transporter A family member 7-like [Glycine max] gi|356508588|ref|XP_003523037.1| chr0 10536061 10537771 -
3 domain predictions
 –
Lj0g3v0033319.1
n.a. PREDICTED: ABC transporter A family member 7-like [Glycine max] gi|356508588|ref|XP_003523037.1| chr0 10536061 10536987 -
3 domain predictions
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Lj0g3v0033459.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr0 10564930 10565805 +
2 domain predictions
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Lj0g3v0036419.1
n.a. PREDICTED: thymidylate kinase-like isoform X3 [Cicer arietinum] gi|502084498|ref|XP_004487702.1| chr0 11643481 11644309 +
3 domain predictions
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Lj0g3v0036599.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357494411|ref|XP_003617494.1| chr0 11682173 11683519 +
2 domain predictions
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Lj0g3v0037709.1
n.a. PREDICTED: intron-binding protein aquarius-like [Glycine max] gi|356574068|ref|XP_003555174.1| chr0 12159602 12174144 +
3 domain predictions
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Lj0g3v0040489.1
n.a. PREDICTED: ras-related protein RABB1c-like [Glycine max] gi|356555789|ref|XP_003546212.1| chr0 13178014 13178640 +
3 domain predictions
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Lj0g3v0040819.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357467591|ref|XP_003604080.1| chr0 13365112 13366107 -
3 domain predictions
 –
Lj0g3v0041629.1
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
3 domain predictions
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Lj0g3v0041629.2
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
3 domain predictions
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Lj0g3v0041639.1
n.a. PREDICTED: DNA replication licensing factor mcm5-A-like [Cicer arietinum] gi|502151329|ref|XP_004508387.1| chr0 13713936 13719092 +
3 domain predictions
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Lj0g3v0041639.2
n.a. PREDICTED: DNA replication licensing factor mcm5-A-like [Glycine max] gi|356562886|ref|XP_003549699.1| chr0 13715972 13719092 +
3 domain predictions
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Lj0g3v0041889.1
n.a. PREDICTED: ABC transporter C family member 12-like [Glycine max] gi|356517706|ref|XP_003527527.1| chr0 13755005 13768595 +
3 domain predictions
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Lj0g3v0041899.1
n.a. PREDICTED: ABC transporter C family member 2-like [Glycine max] gi|356508251|ref|XP_003522872.1| chr0 13770401 13778552 +
3 domain predictions
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Lj0g3v0044699.1
n.a. Disease resistance protein [Medicago truncatula] gi|357468563|ref|XP_003604566.1| chr0 14767737 14767998 +
3 domain predictions
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Lj0g3v0044709.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356494937|ref|XP_003516337.1| chr0 14768125 14768526 +
2 domain predictions
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Lj0g3v0044719.1
n.a. n.a. chr0 14768125 14768687 +
2 domain predictions
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Lj0g3v0044919.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr0 14775594 14782094 +
3 domain predictions
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Lj0g3v0044949.1
n.a. TIR; AAA ATPase [Medicago truncatula] gi|124361211|gb|ABN09183.1| chr0 14784475 14786461 -
3 domain predictions
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Lj0g3v0044979.2
n.a. SNF2 super family [Bathycoccus prasinos] gi|412991118|emb|CCO15963.1| chr0 14789268 14791066 +
3 domain predictions
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Lj0g3v0044979.3
n.a. SNF2 super family [Bathycoccus prasinos] gi|412991118|emb|CCO15963.1| chr0 14789268 14791066 +
3 domain predictions
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Lj0g3v0045059.1
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502091202|ref|XP_004489475.1| chr0 14809885 14814337 +
3 domain predictions
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Lj0g3v0045069.1
n.a. PREDICTED: ABC transporter C family member 5-like [Glycine max] gi|356545904|ref|XP_003541373.1| chr0 14815358 14817592 +
3 domain predictions
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Lj0g3v0047099.1
n.a. Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission Stategi|390136234|pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission Stategi|390136235|pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In Postfission Stategi|390136236|pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In Postfission Stategi|390136237|pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In Postfission St chr0 15713457 15714079 +
3 domain predictions
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Lj0g3v0047109.1
n.a. PREDICTED: dynamin-related protein 5A-like [Cicer arietinum] gi|502159737|ref|XP_004511514.1| chr0 15714091 15715072 +
3 domain predictions
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Lj0g3v0047119.1
n.a. Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission Stategi|390136234|pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a) In Prefission Stategi|390136235|pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In Postfission Stategi|390136236|pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In Postfission Stategi|390136237|pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In Postfission St chr0 15714718 15715127 +
2 domain predictions
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Lj0g3v0047129.1
n.a. n.a. chr0 15714718 15715127 +
2 domain predictions
 –
Lj0g3v0047139.1
n.a. PREDICTED: dynamin-related protein 5A-like [Cicer arietinum] gi|502159737|ref|XP_004511514.1| chr0 15715074 15718495 +
3 domain predictions
 –
Lj0g3v0047499.1
n.a. Cc-nbs-lrr resistance protein [Medicago truncatula] gi|357493209|ref|XP_003616893.1| chr0 15886067 15893084 -
3 domain predictions
 –