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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0322800 |
| Transcript ID | LotjaGi2g1v0322800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence; TAIR: AT1G60790.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q8VYR3|TBL2_ARATH Protein trichome birefringence-like 2; TrEMBL-Plants: tr|A0A0L9USH9|A0A0L9USH9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0322800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79757873..79763474) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGTTAATGGCTGTTCACTGTTGAGTTTAACGTATGGAAATGCTAATCAGTTACAATTTTAATAAGGTGGTTCGTTTC AATTTTGTAATTTGAAAGATTATCCTAAAAGCTAGAACTAGATCTTGACCATTTTTACCATTTACTTTCGATCACTTTAA GATTCGTCCTAGGAAAAAAAAAACCGACTCATAGTATTATCAATTATGCAGTGTCACAACCCTACAATACACAGGTGCAT TGTTCTTGTTCCCACTCTCCACTCACTCTCTGCCATTGCCACTGCCACTGCCACTCATCTCTGAAACCACGTTCTTGTGT TTCTTTCTCTTCTTCCAAACACGGTTCTTCTTCTATGCATTGGCTTTGTTCCATTTCTTCTCCATGGACTCCAACAAGAA ACTACCATTCTCAGAGCCATTTCTCTCTCAGAGGAGAAAGGTCTTGTCCGGTTTCAGTTTAGGCATTGGTGCTTCTCTCC TCTTCCTCACTCTTCTCTTCCTCAATCCTTCCTTCAAGGTTCCCAATGTCCAAGTCCTTCTCCAAGGATCTGATCAAAAC TCTTCCTCTTCTTCCTGGCATTTCCCCTTTTCCACCTCCCCTTCGAGCAACGCTTCCGTGAGTTCTCTGCAGAGAAAAAG TGAAGTGAATGTGTCAGTGGAGGCTTTGGAGAAAACCCATCTCGGGAATCTGAATAACCATCGTGGAAATGCAAGCTTGC ATGCTGAAGAACAAGGGTTTCCACCGGAAACAGGTGCATTGGTCGCTGGAAAAGAGAATTTCTCGGATCCTAATGGGGTG GCTAAAGATGGAGGAGCCTTGCTCGGTGGGAAAAGAGAAATTGCTGCGAATTTAAGCGTGTCGGTTGAAGTGAACACCGA CACGGTGATGCAGAAAACTATGGAAGGAGGGTTACAGAAGGAAAACAACAATATGGGAAATTCGTCGTTGGATGGAAATG CTGTGGAGGGAAAGAATGAAGGGGAGTTGATGAAGAAAATGCAGGATGGTTTCCTCGGAAATTGTGACATATTTGATGGA AGTTGGGTTAGAGATGATGATTCAAAGCCATACTACCCATTGGGTTCTTGTCCTTATGTGGATAGGGATTTTGATTGTCA TCTTAATGGGAGGCCTGACAGTGAATATGTGAATTGGAAATGGAAGCCAAATGGGTGTGACATTCCAAGGTATGATTATT GATTACTAGTTTACACTATGAACTGAGAAATATTTTTAATTCAGAATAGGACAAAGTAAAAAAGTCAAAGCAAGTTTTCT ATGTTTTTATGTGAGTAAGGAATTACAATGAATCAGTAGGATTGCTAATTTTCATGGAGTTTCAGTTTGATTGGTGTGAG TTGTGACAATAAATTCAAAGGGAATCTTGCTGGTGAACTAAATTTCTGCAGAATATAAGAGTAAATTATTGCTTGGTCCT CCTTATTGTAAATGCTTGTAAGTTTCAGAGACAAAGGGATAGAGTGGAAAGGGAAGGGAATAGGATATCACTGTAGGCTA CCTTCCTTCCCTTAAATTTTTCACCGCACCAAAAGAAAAGGTATAGTGAAGAAGGGGTAGAAGGGAAAAGGAGATTCATT TCCTATATTGGGGTTTTTATAAAGGGAAGAAAGGACAGGTGAACAATTTTAGGTGTCAAATTGAGTATAATGGTAGTTTG ATCCCTTGAAATGTACTTCATTGAAATGATGTGTGTGATTCAGCCCTTAAACTACGAACTCACTTCACATTACTCCCTAT TAAAGATAGCAAAAGGATTGATTAAGTTATCCAAGTTTGATTAATTTAAGAACTGAGTCATACATTATGTTAATTATGGG GCTAAAATGTGAGTGGGGTGCATTTGGAAGAACCACAATGTAGTTTTGGTTTACAGTCATGTCAGTTATTTTAAACCATT GAATAAATAAACGCATTCCTTGTATGTTGAATGGTTGATTAATATTGATGTGACCTCAGTTTGAATGCAACTGATTTTCT GGAAAAGTTGCGAGGACAGAAGCTGGTTTTTGTGGGGGATTCACTGAACAGGAACATGTGGGAGTCCATGGTGTGTATTC TATGGCAAAGCATTAGGGACAAAAAACGTGTCTATGAAATTTCAGGGAGAACAGAATTTAAGAAGAAAGGTGTCTATGCT TTTATGTTTGAGGCAAGTTTCTGGTACATCTGTGAGATTTTGCCTAGTATAAACCTTGTAATGTTACTCATTGATGTTTT GTTTTGGGTTATATTTGTAGGATTATAATTGTTCTGTGGATTTTGTTAGCTCACCGTTTATTGTTCGAGAGTCAACTTTC AAAGGCAAAAATGGGTCATTTGAGACCTTAAGGTTGGATTTGATGGATCAGACAACTTCCATGTATCATGATGCTGATAT AATAGTCTTCAATACAGGCCACTGGTGGACCCATGAGAAAACATCGAAGGGGTAAGTTCAGTCTGTCTAATATATAAACA CTGCTTTTAAATTATCTATGGTTCCGTGCTTCAAAGTGTTCTTGAAATCCATTGTCAGAATGGTGCTTCAAAGTGTTCTT GAAATCCATTGTCAGAATGGTTCTTCTTAAATTTTCACGATATTTGTCAGAATGGTTCTGCTTTTTAATGTTTTTTATCC TTAATAAGTTATAAGCATTTGGAAGTAAGTTTTTTATTTTGCTGTCATCTGGTACTGTTACAGAGAAGACTATTATCAAG AAGGCAACCATGTCTACCCAAGACTCAAAGTTCTGGATGCATTTACTAGGGCATTGACCACTTGGGCTAAGTGGATTGAC GACAATATCAATGCCAATCGAACTCAGGTTTTCTTCAGAGGATACTCAGTTACCCATTTCAGGTATTAGTCTTTTACATA GCTTCCAAAGTTTGATAGTCTGGACTTGCTACTCATTTCTTCCTTTACATTGACTCTAAAATATGTTGAATTAACTTTAT GGCTGAAAATTTATGTAACAGTTAAAACTAGACATGCAAACTGCCCAAATCCCTATCTCTCTGCTATTGACCACCACTCT CTTTCCCAAATTCACTCACATCACTCACCCTATTGGAAATATATTTATGTATATATCAATTAAAATGTCTTCTGTTTGAA GCTTGAGATTGTAGAACCAGATGATAATATACTTTTAAATTTGAACTTGCACGAGATCAGTTTATACTTCTAGTATAAAG AAATTTAATTAGAAAGACCTTAGTAGTTTACACTTACACAGTATACAAGAGGTGGATAATTTATGTAATCTCAAAGGTTG AAAACCTAGTCACAGCAATCCTCTTTAGTCTTTAGTTTTTTTTATAAGCCTCTTTAGTCTTTAGTTACTTTTACATTTAG TCCTGCATGAAACTTCTTTAACTGCTTTATATATGTTATTGTGATGATTTGTTTAATATTCTACCAGATTCTTTCAGAAA AATTATACCATTTTTAGGAGTCTACCAACTTAATCCATGTTTATTCTATAACAACATTAAATGTGGAGACTGTATTTGTA GTTTTTAACTTTTTATACCGTTGTCCAGATTATCTATTAGCAAATAGCAATACACTGATTCATATTCACAGAATAGTAGG TACCCGTACATGTTAACCTCTTACCAATCAAATTATCTACGTAATTAGTATTATCAGCTATCAATAAAATTAACCAGTTA CAATTTGACTCAGCCACAAGCAGTGGTCAATGCAAACCCCATAATGGTTATTTAAATTTTCCTAAGTGGGGATATCAATT GTATACATATTTTTTTGAACGTATCAATTGTATACATTAGTGATGTGCTGATTCCTATCAATTTGGCATGCCTTTATAAA GTAGACTTAAACTTGTTGTGCGCTTGTCTTAAACATGACAATTAGAAGACCAATTTTCCTTCATCTTCATTTGGTTTTTA AATAGCATAATTTTCTTCCAGAAGTTTGATAAGCCAAAATGAGTTTTAATTTTACTACCCTATCATATAATTATTTGTTA GCCAATCTAAAAAGAAAGCCCAGCAAAGCATAACAGTGGGGGAATACAAAACTAAAATTCATGAACTCATTTCACCATTT TGCTTCAACTGCTCCTTTTGCTATGGTTGCCGTTCTTATATAATAAAAACTACAAAATGATGCTATTCAAGACTTAAAAG GAAAAGTGCAAAAAATGTAATTGGAGTATTATTGAAGAATAAGCATTGCTTTAATAAATTTAGTCTATGACAGAAGTTTT GTTTTGTTAAATAATAAACAACAACAATAACGAAAGCTTTATCCCCCCCCTAAGTGAGGTCGGCTATATGGATCATGCCA TTGTGCTCAATAAAAACCAAATTTTGTAGAATATTATTGACCATGAGGTCACTTATAATGTAAGTGATAAATGTCCGAGT CCAAGATTTAAAGGGAAAATAGGAAAAAAAGATGTAACTGGAGTATTATTGAAGATTAAAAATTGTTTTTAACTAATTTA ATTCTATATTAAAAGTTGTCTTTGGAGTTAGAAGGGTTAGTTCCTGTAGATGAGTGGGTCTGAATCAGAGATAGAGTAAT GGTGTAATATGGAATAAATATTGGATTAGAATGTTGAGTATGGGTCTAGATGGACTGCAAGAGTTGAATAGTAACAACTC ATATTGTTCAGATGATAAAAATTGATATATATGGCTAAAATAGAGATAAAGTGGCAGCGCCTAAACTCACGTCTCAGTTC TAGTAGTATCAAACTTGAAACCAAATGTACTGTTAATATATTATAAATAGATTTTAATACTGTCTAACTTGCTTTCAGGG GTGGGCAATGGAATTCAGGAGGACAGTGCCACAAAGAAACCGAGCCAATAATGAATGGAACTCACTTAAGGAAATACCCC TCGAAAATGAGGGCTTTAGACCATGTCATCCCAAAGATGAAAACCCCTGTAATATATATGAACATAAGTAGGATGACAGA TTACAGGAAAGATGGACATCCTTCTATATACAGAATGGAATACAAGACTGCTGCAGAACGCGCTTCTGCAGAGCTACACC AAGATTGTAGTCATTGGTGCTTGCCTGGAGTACCTGACACTTGGAATCAACTACTCTATGCTTCTCTGTTAAAACATGGT AAAGGCAATTGGAAAAGCTGAGCAAGACTCCTGAAAATGGTTCCATACCCCCTTTTCCAATTCTTTATATACATGTATAT TCCTTTGTTTCCCAGTTTGGGGGTCCATCACAAAGGGTGTTGTTAGTATTGTGTATTGTGTGTATTTATTATCTACTTCT AAGTACAGTTGTCACAATGAATACCACGAAAGCTGTAGAATTTGTTTATCATGAGCATAATTTAGTTCTTAGCCTTGGAT TAGTTACAGAAAGTGAAGGATCAAACTTGGCAATTAGTGATTTCTTGTGATGGGAAGATAGATGATAGAAAACAGAATAT GCTCTTTTAAAGCAAAAGGGCTCTCTAATTGGCTAACTTTATAAAGTGGCTATTTTCTGTTTTAACTTTTGAGTCTGCAT TTTCTTGCCATTGCAATGGGCATTGGAAACGTGCAGATTAGGGTGTTAACACGAGATTGAGTGGTTGACACCTTTTTTTT TA
CDS sequence (LotjaGi2g1v0322800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCCAACAAGAAACTACCATTCTCAGAGCCATTTCTCTCTCAGAGGAGAAAGGTCTTGTCCGGTTTCAGTTTAGG CATTGGTGCTTCTCTCCTCTTCCTCACTCTTCTCTTCCTCAATCCTTCCTTCAAGGTTCCCAATGTCCAAGTCCTTCTCC AAGGATCTGATCAAAACTCTTCCTCTTCTTCCTGGCATTTCCCCTTTTCCACCTCCCCTTCGAGCAACGCTTCCGTGAGT TCTCTGCAGAGAAAAAGTGAAGTGAATGTGTCAGTGGAGGCTTTGGAGAAAACCCATCTCGGGAATCTGAATAACCATCG TGGAAATGCAAGCTTGCATGCTGAAGAACAAGGGTTTCCACCGGAAACAGGTGCATTGGTCGCTGGAAAAGAGAATTTCT CGGATCCTAATGGGGTGGCTAAAGATGGAGGAGCCTTGCTCGGTGGGAAAAGAGAAATTGCTGCGAATTTAAGCGTGTCG GTTGAAGTGAACACCGACACGGTGATGCAGAAAACTATGGAAGGAGGGTTACAGAAGGAAAACAACAATATGGGAAATTC GTCGTTGGATGGAAATGCTGTGGAGGGAAAGAATGAAGGGGAGTTGATGAAGAAAATGCAGGATGGTTTCCTCGGAAATT GTGACATATTTGATGGAAGTTGGGTTAGAGATGATGATTCAAAGCCATACTACCCATTGGGTTCTTGTCCTTATGTGGAT AGGGATTTTGATTGTCATCTTAATGGGAGGCCTGACAGTGAATATGTGAATTGGAAATGGAAGCCAAATGGGTGTGACAT TCCAAGTTTGAATGCAACTGATTTTCTGGAAAAGTTGCGAGGACAGAAGCTGGTTTTTGTGGGGGATTCACTGAACAGGA ACATGTGGGAGTCCATGGTGTGTATTCTATGGCAAAGCATTAGGGACAAAAAACGTGTCTATGAAATTTCAGGGAGAACA GAATTTAAGAAGAAAGGTGTCTATGCTTTTATGTTTGAGGATTATAATTGTTCTGTGGATTTTGTTAGCTCACCGTTTAT TGTTCGAGAGTCAACTTTCAAAGGCAAAAATGGGTCATTTGAGACCTTAAGGTTGGATTTGATGGATCAGACAACTTCCA TGTATCATGATGCTGATATAATAGTCTTCAATACAGGCCACTGGTGGACCCATGAGAAAACATCGAAGGGAGAAGACTAT TATCAAGAAGGCAACCATGTCTACCCAAGACTCAAAGTTCTGGATGCATTTACTAGGGCATTGACCACTTGGGCTAAGTG GATTGACGACAATATCAATGCCAATCGAACTCAGGTTTTCTTCAGAGGATACTCAGTTACCCATTTCAGGGGTGGGCAAT GGAATTCAGGAGGACAGTGCCACAAAGAAACCGAGCCAATAATGAATGGAACTCACTTAAGGAAATACCCCTCGAAAATG AGGGCTTTAGACCATGTCATCCCAAAGATGAAAACCCCTGTAATATATATGAACATAAGTAGGATGACAGATTACAGGAA AGATGGACATCCTTCTATATACAGAATGGAATACAAGACTGCTGCAGAACGCGCTTCTGCAGAGCTACACCAAGATTGTA GTCATTGGTGCTTGCCTGGAGTACCTGACACTTGGAATCAACTACTCTATGCTTCTCTGTTAAAACATGGTAAAGGCAAT TGGAAAAGCTGA
Protein sequence (LotjaGi2g1v0322800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSNKKLPFSEPFLSQRRKVLSGFSLGIGASLLFLTLLFLNPSFKVPNVQVLLQGSDQNSSSSSWHFPFSTSPSSNASVS SLQRKSEVNVSVEALEKTHLGNLNNHRGNASLHAEEQGFPPETGALVAGKENFSDPNGVAKDGGALLGGKREIAANLSVS VEVNTDTVMQKTMEGGLQKENNNMGNSSLDGNAVEGKNEGELMKKMQDGFLGNCDIFDGSWVRDDDSKPYYPLGSCPYVD RDFDCHLNGRPDSEYVNWKWKPNGCDIPSLNATDFLEKLRGQKLVFVGDSLNRNMWESMVCILWQSIRDKKRVYEISGRT EFKKKGVYAFMFEDYNCSVDFVSSPFIVRESTFKGKNGSFETLRLDLMDQTTSMYHDADIIVFNTGHWWTHEKTSKGEDY YQEGNHVYPRLKVLDAFTRALTTWAKWIDDNINANRTQVFFRGYSVTHFRGGQWNSGGQCHKETEPIMNGTHLRKYPSKM RALDHVIPKMKTPVIYMNISRMTDYRKDGHPSIYRMEYKTAAERASAELHQDCSHWCLPGVPDTWNQLLYASLLKHGKGN WKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 9 | 558 | 550 | 1.8E-241 | – | |
| PANTHER | 9 | 558 | 550 | 1.8E-241 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| Phobius | 41 | 563 | 523 | - | – | |
| MobiDBLite | 113 | 134 | 22 | - | – | |
| Pfam | 213 | 266 | 54 | 4.4E-20 | ||
| Pfam | 267 | 551 | 285 | 6.0E-97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0322800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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