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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0363800 |
| Transcript ID | LotjaGi2g1v0363800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT3G45600.1 tetraspanin3; Swiss-Prot: sp|Q9M1E7|TET3_ARATH Tetraspanin-3; TrEMBL-Plants: tr|I3T275|I3T275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0363800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86137272..86144375) extracted from Lotus japonicus Gifu genome v1.2.
CATCACACTTCACACACATGTCCAAAACAATTTCATCATTCCCAAAACCCATACCATACACTTGACTTATAAATTCATTC ATTAAATTCTCATCACTACCATAACTCACTTTTCAATTTTCCATCTTCAGATTCAAATACAAGAAGGAAAAAAAAAAACA GTCTCACAATCACTCAAAAAAATTCAGAGAAATCACAAAGATGAGAACAAGCAACCATTTGATTGGTGTACTAAACTTCT TAACATTCCTACTCTCAATTCCAATTCTAGGAGGTGGAATCTGGCTAAGCAGCAGAGCAAACAACACAGACTGTCTCAAG TTCCTCCAATGGCCATTAATCATCATCGGCGTGAGCATCATGGTGGTATCATTAGCCGGTTTCGCCGGCGCGTGTTACCG GAACACGTTTCTGATGAGGCTCTACCTGGTGGTGATGTTTTTGGTGATTGCAGTGCTGATTGGTTTCATAATCTTCGCGT ACGTGGTTACAGATAAAGGGTCAGGGAGGAGGGTGTTGAACCGTGGTTACATGGATTATTACTTGCAGGATTACTCTGGG TGGTTGGAGGAGCGTGTGGCTAGTCATAGCTATTGGGGGAAGATTGCTTCTTGTGTGAGGGATTCTAAGGTGTGTGCTAA GATGGGGAGGGTGGATTCTAATGGGATTCCTGAACCTGCTGATGTGTTTTATCTCAGAAAGCTCACCTCTGTTCAGGTTT GTCTTCTTCCTCAAATAGTACTTTCTTATTGGATGCTTGATGTGTATATGTTAGAACATTCTTTTACGGTTAGATTCTAA AATCAGAATCAATTTTGGGGAAATTAATTGTTTCTATTGTCTGAATAGCTTTTGAGTTTCAGAAAGAAATTAATTGATTC TATAGGTGATCATATGCCGAGGTTGCTAGATACATATTTAGAAATCTTTCTACAATTGATTCTTTATCTCTAAACTCGAC AGTCAGGGGAGTTGTACTAAGTGATAAGCACACAACCTGGTTATGAGGAATAGTGTTAGAGTGGCTTAGCTTTAGGCTAT GTCTGTATTTCCGTTTGGTGCCCCTAAAGTACTTTTGGTTCATGTGTAACTCTGTGCCATGATGTTTGGCAACTTCCAAC TCACATTCACCCAACTCAGTTTGACCCCTAAACTAGCTTTCATCCCAACTTAACTCAAGTGTAACTTCTCAGTTCAGTTG AGTCCTTTGGGGGTGATTAATCATGAATTTAAATACATCACCCAACCTGTAGTGACATTAAAGCCCTCATCTTTCATACC TTTGAGCCCACCACCACATCTAGAAACTCATGCTTCACCGTTACACACCACCTTCGAGACCACCGCTTCATCGCACACCA CATCACCCACCACCTCACCACGCCGCGACCTCCGCCATCGTATTCCAAGAAGCCACTACAAATTCGTTCGTCCTCCTCTA CCCCTTCATTGGAACACCATCATCACTGAAGTTGCGAACCACCGCGGCAGCACCATCATCATACTAACAATCTCTCCTTG GCCAGCGCGAGGAACACTGTCGCTTCAGATTGCCTCTGAGAAGCCACCGTCAATCTCGATCTCAAACTCTCTCTTCCTCC CTCACGTTTCTTATCCCCTTTCCTCTGTTGGTGTGAGATGATTGGGCCTGAGCCTGGTGTTTAAGTTAGGCTAAATTTTC ATTTTGCATTTCATTTTCTGTTTGGTGTTTTGATTTGTTCTGAATTTATTAAATTTTGATGGATTAACTATAAAATAATT GCATAAAAAACATGTTATTACTTAATATGTACTTAAACATGTACCAAAAAAAAAGTACTTAAACAATAATGAAAATAATA AATTTAAGGAATAATAATTTCAAAACCTTCACACAAAAATTCATTATAATAATCATACCCTTTTTAGTAATTAGACACAT TTAAAAGTGCTTTCAACTAAATTATCCAAACAACATTCCATTCATCAAACTTACTTTTAAAATAAAAAGTATCCAAACAT AAATCACATTACATTCAACTCACATTCACTCAAACTCTATTTTGCAAACCGACATTCACTCAAACTCCGTTTTGCAAACT GAAAACCAAACACACACTTAATCGTTATAGATTCTAAAATCAAAATCAATTTCAATGGTAATGATAATGATAAGCTTTTG TAAGTTTTAGTTTTAGATTCTAAGAACCCTCTATGTAAAATTAGTATAAGAAAAACTTTTTTTAGCCAAAAAGTATCAAC CGTCAGTCAACAATCACTAATTCACTAAATGGTAAATGTCTGGCTATATTATGACCTTTGTTCTCATAAATGATTATCAA ACCCTCATCCTCATGGTTAAAGGACAAAATGTGCTAACCACTATACTCACTTAATATATAAGAAGTTAAAACTCTCATGG AAGGGGTTGGGAGTCAGGATTTCATTTATGAGCTTTCTTGAAGTGGTTTTCAGTTTCTCTTTCTGTTTTGAATTTTGAAG TTTTTGAAAAAAACTTGTGACCGTTTTTTTTCCTTGAAAAGTTTTCTTTTAAGTGCTTTTAAAGAAAGTATGGGTGGCAC CGGCAGAGAAGCAACTTGAAATGAGATGAAGTGCATGTGTTTGATTAAATGGGTAGATCTGAGAGGAACCCTGCAGCATG TGTGGATGATGGGTTTTCACTCGTCAACCCTCCGAAACTTGTGGTTCTTTGCCCAATTTATTGCAACCAATATTGAAAGA GGACAAAAAATATATAAGAAGAAACAAAAAAATGACATTGACAAAATTGTCATCACATTAAAATAATATAGAAGATTATT GAACAGTATTTGGAATTGGAATTGCGGTGGCATCACTGCTAGATAACAAACGTGCCATGTCATGCTTTGATTGAATATTT TTTGGTATACACTATTAGAATTTAGGAGGAGGCTTAACTCAAAAAACTTAATTTAAAAGTTTATAATTGTACTCTAACTC TCATATATATAAACATTTCAGTAGTTGTATATATCTGTAATAAATGCATTTCAAAAAATATATATCTATAATAAATGTGG AACTTAACATACACCTAATTGGGCTGTGATATGAGTGGTGATAGTACTGTTGTAGTGTTTAAAAATAAGAAATGGGTTTT TACATAATTTTCAAAAGTTTGAATCTCATAAAAGAAGAGAGAACGATACAGTGACCATGATATGAGATATCATGAGAGTA TAGAACAGGTTTATGAGCTATGTCGACAGATAGAAAGTGATGGAGGTGGCGGGACCATCTAGTATTGAATAATGGTGTTC ACACTTGTGATTGCAGATAATTTTAATCTGTTACTTAACATAGCATAATTTCTTAAATTTGAAGGGACATGTGTTGCTTC TAGGTAGTTATCATATAAAGTACGTTTCAAAAAAAATTATTATATAGAAATTGTGTGTTCGAAAGAAATTGTGTGTTTAC GTACGGGTATTAAAGAACTCTAGAACTTTGACCAAAGTTTTGGGCCACTGATTATGGGCTTATCAACTTCTCTTTTTTTA GTATTATTTTGTTGGATTTAATTTAATTTATATGTACCGACAAGTGTAAACAGTTTTACTTATGCATTCAATTTAATCGC ATTTCTGCATTTCTCGTTTAATATTTTTAAATTAACTTATGATATGTTATATTGATTATAATTGAATGATTATGTAAATT TTTCTTACAGTGCATAGTAATTGATATCTATTATTTTATTTAGTAAGACTTTTCTTTTAGTATTGTTTTGGCCAAATTGC TAAAATTTTATTTTTTTGGTAATTAATCATCTTGTTGCCGACCTTTGCGTTTGTAGTTAGACCATTATTGACTTTCTCTC TGTTTATATTTTGGCTCCATTTAGAACTTTATCCTTTTTGCAGTGGCAAGCAAGCATGATGTGTACATGTAACCTAATAC AATAGTTGTCGCTTTCTCCTTTTTACAAGCTTCCCCCATCTAACATTAGAATGATCTTAATTATTCAATTCAAACTCTGA AAAAGTTAGGTGACTAATTAAGTAGGGAGAACCTAATATGCACCATTTTTAGGTGGTGTAATTTTACACTATCTACTTTA ACTGGGTATAGCAGGTCAACACATAATATTTTTTAAGAAAAAACATCATTAAAAATTTGTCATATATTAAATATCTTTAA AAAAAGATGTGTTGACCTGTTATAGTAAGTTAAAAAAAGTGGTCTAAAATTAGACCATTTTAAAAGTGGTCCACATTAGG GGTCACCTTTAAGTAATGTGAATATTAATATTAATTAATAAAAAGAGTATGTTCAGTTTTTTTATCTGTAATTAAGTACT AAGGTCTCTTAAAACAAAACCAGTTGGGACCTTTCTCTTTTTTGTTTGCCTGTAAGTAACAGTATGTACAAAATTGTAAA AGAAATATGGATCCTTTCCATGATTTTCCACACCCAATAATGCAACTTCATTTCCACCTATTTTTGTTTCTATTCCTCTC CTTTTATCATCTATCACATCTACAACTTTATCTCTCTTACTTTTTCTTTTCTTCCTATCTCTTTCCTCCTCCACCTCCAC CTCAAAATAAGATGTGAAGAAAACATTTTCCTTTTTTAAGTGATCCACTATTTTTAACTGTTTATATAATAGTTTTTTAG TTGAAGATTCTTAATCAACGGCTATTAACAATAGATTACCGATTACCGGCGGACCATTACCCTATAACTTGTCATTATTA GATAAATGTTAAATTTCTTTACTACATTTATTGATTTAATATAGATAATAAAATATAAATGAAATTATGTTAAAGAGACT AAAGAGATACATGAGTGGTGTCTAATGTAGTATGATAGCAAATAATTACACTCTAGGATTTTATGTATGTCAATGATTAA TATATGAGATATTTATAGCTATGCATATATGGTCAATTGATTTATGATTTATGCCAACGACTTCAAAACAGTGATGATTT CTTATGTGGTCGGTATTACAGGTTGCAAAATTGACTTGACAGTTTTCTTATCTTATTGTCTTCTCTTGTTTTGCTCTAAT TGGTTGATTAAACTCTGGCATTTTGGTCCTTAACTAGGCTGGTGCCTGGCCCGCATGCGATCCATGCCACATGAGGAAGC AACTTTTTGTTGCATCCACAACATTTTTCTAGGAGAAAGTAAAAGAACAATTATAGTTTAATAGAAACGAGACACAAAAA GATGATGACAAAATGGAAATCTCTTCTTTTCAAAACACAATTTAGAACCTGGAACCAACTTAGAAACAATTGGATATGGA TGATTCAAAGTAGTACATGTAACATGCTTCTTTAAAGTAAGATTTTGGGTTCCAATGTTTCACATGGAAGTAACTTCTAT CGGAAGAGTTAGATTAACCATAATACAAAATTATATTCCATATATGTTTGGTCAATCCAAAAATCTTAAAATCAGCCCAC TTTAGTCTCTATTGAATCAAAGCACACTCACGTATATATATATATATAGAACTCCTCCCTCATGTGCTTAATAAGACGAG AAGTGTTATCAACACTTACTACTCGCTCTAACACTCTTACTTTTATTGGTTGAAATCCATATAGGGCCAACTAAATTACT AGGAGCTTACTCATAGTTTGGTGTGACCTATTTAGATTTTAACTAATAAAAGAAAGTATTGGAGAAATAGTGTGAAAGTG GGTGATGCTGACATTTCTTAAATAATATTAAGAGTATTTGGATAAAATGTAATGCTTTCATTATAATTTACAAGGTCACT AATGGATATCCAATCTTTTAGTTTGTATTTAAATTTTAAGTTACTTTGGCATGCATTGGACTTGGTTAGTCATTAGGCCA TTTAGTGGGTCACGATCGTAATGAAGCAGCTGGCTTTTGAGTTGAATTGAATTATTGAGATTGTTTTTAGCTTAATCAAA TACATTGCATGTTTAGTTGAATTTATTTTTCCTCATAATTTTCTTCTGACATGCAAATGTTACACTTAAGCTTCTCTCTA AAATTGATTTTGGCTTAATAGTAGATTATAGAAAGATTTTCAAACGTACTAACTTGGGCTAATTCCTTCTCAATCCTGGC TTTATTTCTTCAAACTTGTCACTAACATTTAAGGCTAAAGAGTTTGATTCTAATTCTATACATGTGATGCCATTTGTTGA AGTAATGTTCTCCTCATGTGTATGTAGTCTGGTTGCTGCAAGCCCCCAACAGATTGTGGCTACATCTATCAGAACGAGAC TGTGTGGAACCTTGGATCAGGATTAATGTCTGCGAACCCTGATTGCTCGAAGTGGAGCAATGACCAAGGGTTTCTCTGCT ATCGCTGTGATTCTTGCAAAGCTGGTGTGCTAGCTAGTCTCAAGAAGAGTTGGAGAAAAGTTTCGGTCATCAACATTGTT GTTATGATCATTCTTGTGATTGTTTACATCATTGCTTATGCAGCTTACAGGAACAACAAAAGGATGGATAATGATGAACC TTATGGTGAAGCTAGGATGACAAAGTCACATCCTAGTCACTTTCAACTTTAACTGCTCTGTTTTGATGATGCCAAAGAGG TTCAACAACAGCCAACCTGTCTTAGGATTATGGGGATTTTAGTGTTTTGTAACTAGGTTGCTCTTATGGTTTTGTATCAA ACTCTTGTACCAAATGTGTTTGTTATGTTTACCTAATGTTCGACCTCTGTTTTTTTGCTTTTAAGAAGATACTCATTTTG TAATTTGTTGAAATTAAGTATTAACAGCTTTGTAAATTTGGAGAAAATTCTTACTTTTTGTCATAAGTATGCATTGTTTC CGATCTCAATCACATTACCAAGAAATGGTCTACATAAAATTATCTACTCTAGTGTCAATAAGCACATAAGAGTTTTCAAG CTACTAAAGTTGCATACTTCAGAAAACATAGCTTCATACTTGTAATTTTGAAGTTTAAGTGTCTGCTCTTGATGTCCTTA GAGTTTAAGTAATTGAAGTTTTATTGTTTTTTGTTGTTCCATGTTTTTTTTTCTCTCTCTCTAATTGGAATTGTTTATCG GCATTTTTGGTGTGATGGGTTTGTAAAAAAAAGATTAAAGACCAAATGAAGCAATTAACGCATG
CDS sequence (LotjaGi2g1v0363800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACAAGCAACCATTTGATTGGTGTACTAAACTTCTTAACATTCCTACTCTCAATTCCAATTCTAGGAGGTGGAAT CTGGCTAAGCAGCAGAGCAAACAACACAGACTGTCTCAAGTTCCTCCAATGGCCATTAATCATCATCGGCGTGAGCATCA TGGTGGTATCATTAGCCGGTTTCGCCGGCGCGTGTTACCGGAACACGTTTCTGATGAGGCTCTACCTGGTGGTGATGTTT TTGGTGATTGCAGTGCTGATTGGTTTCATAATCTTCGCGTACGTGGTTACAGATAAAGGGTCAGGGAGGAGGGTGTTGAA CCGTGGTTACATGGATTATTACTTGCAGGATTACTCTGGGTGGTTGGAGGAGCGTGTGGCTAGTCATAGCTATTGGGGGA AGATTGCTTCTTGTGTGAGGGATTCTAAGGTGTGTGCTAAGATGGGGAGGGTGGATTCTAATGGGATTCCTGAACCTGCT GATGTGTTTTATCTCAGAAAGCTCACCTCTGTTCAGTCTGGTTGCTGCAAGCCCCCAACAGATTGTGGCTACATCTATCA GAACGAGACTGTGTGGAACCTTGGATCAGGATTAATGTCTGCGAACCCTGATTGCTCGAAGTGGAGCAATGACCAAGGGT TTCTCTGCTATCGCTGTGATTCTTGCAAAGCTGGTGTGCTAGCTAGTCTCAAGAAGAGTTGGAGAAAAGTTTCGGTCATC AACATTGTTGTTATGATCATTCTTGTGATTGTTTACATCATTGCTTATGCAGCTTACAGGAACAACAAAAGGATGGATAA TGATGAACCTTATGGTGAAGCTAGGATGACAAAGTCACATCCTAGTCACTTTCAACTTTAA
Protein sequence (LotjaGi2g1v0363800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTSNHLIGVLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVVMF LVIAVLIGFIIFAYVVTDKGSGRRVLNRGYMDYYLQDYSGWLEERVASHSYWGKIASCVRDSKVCAKMGRVDSNGIPEPA DVFYLRKLTSVQSGCCKPPTDCGYIYQNETVWNLGSGLMSANPDCSKWSNDQGFLCYRCDSCKAGVLASLKKSWRKVSVI NIVVMIILVIVYIIAYAAYRNNKRMDNDEPYGEARMTKSHPSHFQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 286 | 286 | 1.8E-151 | – | |
| PANTHER | 1 | 286 | 286 | 1.8E-151 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Pfam | 6 | 254 | 249 | 2.8E-31 | ||
| PRINTS | 6 | 29 | 24 | 1.3E-8 | ||
| Phobius | 6 | 29 | 24 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 30 | 40 | 11 | - | – | |
| PRINTS | 39 | 65 | 27 | 1.3E-8 | ||
| Phobius | 41 | 62 | 22 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| PRINTS | 66 | 94 | 29 | 1.3E-8 | ||
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 74 | 96 | 23 | - | – | |
| Phobius | 97 | 238 | 142 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 239 | 259 | 21 | - | – | |
| Phobius | 260 | 286 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0363800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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