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IPR000301

Description

IPR000301 is a Tetraspanin, animals.

<p>Tetraspanins are a distinct family of cell surface proteins, containing four conserved transmembrane domains: a small outer loop (EC1), a larger outer loop (EC2), a small inner loop (IL) and short cytoplasmic tails. They contain characteristic structural features, including 4-6 conserved extracellular cysteine residues, and polar residues within transmembrane domains.</p> <p>A fundamental role of tetraspanins appears to be organising other proteins into a network of multimolecular membrane microdomains, sometimes called the 'tetraspanin web'. Within this web there are primary complexes in which tetraspanins show robust, specific, and direct lateral associations with other proteins. The strong tendency of tetraspanins to associate with each other probably contributes to the assembly of a network of secondary interactions in which non-tetraspanin proteins are associated with each other via palmitoylated tetraspanins acting as linker proteins. In addition, the association of lipids, such as gangliosides and cholesterol, probably contributes to the assembly of even larger tetraspanin complexes, which have some lipid raft-like properties (e.g. resistance to solubilization in non-ionic detergents). Within the tetraspanin web, tetraspanin proteins can associate not only with integrins and other transmembrane proteins, but also with signalling enzymes such as protein kinase C and phosphatidylinositol-4 kinase. Thus, the tetraspanin web provides a mechanistic framework by which membrane protein signalling can be expanded into a lateral dimension [[cite:PUB00010633]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

Associated Lotus transcripts 20

Transcript Name Description Predicted domains Domain count
PREDICTED: tetraspanin-10-like isoform X1 [Cicer arietinum] gi|502139414|ref|XP_004503758.1| 10
PREDICTED: protein TORNADO 2-like [Cicer arietinum] gi|502154525|ref|XP_004509732.1| 10
PREDICTED: tetraspanin-20-like isoform X1 [Cicer arietinum] gi|502160510|ref|XP_004511769.1| 11
12
PREDICTED: tetraspanin-10-like isoform X1 [Cicer arietinum] gi|502139414|ref|XP_004503758.1| 10
PREDICTED: tetraspanin-2-like [Cicer arietinum] gi|502138819|ref|XP_004503540.1| 10
PREDICTED: tetraspanin-6-like [Cicer arietinum] gi|502118487|ref|XP_004496291.1| 10
Senescence-associated protein [Vitis quinquangularis] gi|380719865|gb|AFD63133.1| 13
Tetraspanin; TAIR: AT5G46700.1 Tetraspanin family protein; Swiss-Prot: sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2; TrEMBL-Plants: tr|A0A151TH91|A0A151TH91_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0333600 12
Tetraspanin family protein; TAIR: AT3G45600.1 tetraspanin3; Swiss-Prot: sp|Q9M1E7|TET3_ARATH Tetraspanin-3; TrEMBL-Plants: tr|I3T275|I3T275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0363800 10
Tetraspanin family protein; TAIR: AT3G45600.1 tetraspanin3; Swiss-Prot: sp|Q9M1E7|TET3_ARATH Tetraspanin-3; TrEMBL-Plants: tr|I3T275|I3T275_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0363800 10
Tobamovirus multiplication protein 2A; TAIR: AT1G32400.1 tobamovirus multiplication 2A; Swiss-Prot: sp|Q9C5W7|TOM2A_ARATH Tobamovirus multiplication protein 2A; TrEMBL-Plants: tr|A0A1J7FXI4|A0A1J7FXI4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416200 11
Tobamovirus multiplication protein 2A; TAIR: AT1G32400.1 tobamovirus multiplication 2A; Swiss-Prot: sp|Q9C5W7|TOM2A_ARATH Tobamovirus multiplication protein 2A; TrEMBL-Plants: tr|A0A1J7FXI4|A0A1J7FXI4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416200 11
Tetraspanin family protein; TAIR: AT5G46700.1 Tetraspanin family protein; Swiss-Prot: sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2; TrEMBL-Plants: tr|A0A151R7W1|A0A151R7W1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0170200 10
Tobamovirus multiplication protein 2A; TAIR: AT1G32400.1 tobamovirus multiplication 2A; Swiss-Prot: sp|Q9C5W7|TOM2A_ARATH Tobamovirus multiplication protein 2A; TrEMBL-Plants: tr|I3SIX7|I3SIX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0190300 11
Tetraspanin family protein; TAIR: AT1G63260.2 tetraspanin10; Swiss-Prot: sp|F4I214|TET10_ARATH Tetraspanin-10; TrEMBL-Plants: tr|I3S769|I3S769_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423900 10
Tetraspanin family protein; TAIR: AT2G19580.1 tetraspanin2; Swiss-Prot: sp|Q9ZUN5|TET2_ARATH Tetraspanin-2; TrEMBL-Plants: tr|I3SY91|I3SY91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0440800 10
Tetraspanin family protein; TAIR: AT3G12090.1 tetraspanin6; Swiss-Prot: sp|Q9C7C1|TET6_ARATH Tetraspanin-6; TrEMBL-Plants: tr|A0A0R0HWS0|A0A0R0HWS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0276000 10
Tetraspanin family protein; TAIR: AT3G12090.1 tetraspanin6; Swiss-Prot: sp|Q9C7C1|TET6_ARATH Tetraspanin-6; TrEMBL-Plants: tr|A0A151U603|A0A151U603_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0276000 10
Tetraspanin family protein; TAIR: AT2G23810.1 tetraspanin8; Swiss-Prot: sp|Q8S8Q6|TET8_ARATH Tetraspanin-8; TrEMBL-Plants: tr|I1LVX1|I1LVX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198800 13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 5.00