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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0380200 |
| Transcript ID | LotjaGi2g1v0380200.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|I3RZP6|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87683086..87687010) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTATTTTTTTCATTACTGATTTTCTTTTTCAATTTCTTGATGCTGTAAACTTTTGAATGATATCTTTTTTTTTCCA CTTTTTATATTCCTAATTTTAGGACTAGAGATTGGTGGTGAGATGAACCTTGCTGCCGGCATTCAAGTTGCGCAGTTGGC TCTTAAGCATCGGCAAAATAAAAAGCAGCAGCAACGGATTGTTGTTTTTGCTGGAAGGTATGCTTAACTATATTCTGTGC TTCGTTGGAAATGTCTTGTTTGTGGTTGTTCTGTGTTAACTGTCTCGATCGTCGTTTTATAGTCCTGTTAAGCATGAAAA GAAAATGCTGGAGATGATAGGGAGGAAGCTGAAAAAGAATAGTGTAGCACTTGATATTATTAATTTTGGTGAAGAAGATG AGGGGAAGACGGAGAAGCTGGAAGCTCTTCTTGCGGCTGTTAACAATAATGATAGCAGCCACATTGTTTCTGTTCCACCT GGTCCAAATGCTCTTTCTGATGTACTGATAAGGTATGTGGGTTCAATTTCATCTTGTACTTTTTCTGTCTAATCTCTTGT TTGTGATCTAGCTTTTGGATATTTATTTGATAATGTGCTGTGACAGTACACCTATATTTACTGGTGATGGGGAAGGTGGA AGTGGTTTTGCCGCTGCTGCTGCCGCAGCTGCAGCTGGTGGTGTATCTGGATATGAGTTTGGTGTTGATCCAAACTTGGA TCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCCAGGCAGGAAGCAGCAGCCAAGAAGGCTGCAG AGGAGGCGGCCAACCAAGAGAAAGGAGGTGAAACCAGCTCCCAAGATGCAACAATGACTGAACGTGCCAGTGCAGCCACT TCTGAAGCTGAGAATAAAACAATTGATTTAATGGTTGGTGCTTTTGTTGCATTTATGATCTGTCTCTGTGTTGCATGTTT TTGTCCGTGCTTTACTGAGAATATAATCACTAAATGCGTATAATAGCTTATAAGACTAGTTTCAGAATTTATATTAATTT TTTAGTAGTTAAATTACAAAGGCGTATGAACTTGAAACTTCTCAAGGAAGACAGTGGGTCCTTAATTTTCTCGGAAGGTT ACTCATTTTAATGGAGGTAGAATTGAAATGTTAGAAACTTACAAAAATAGGTGAGGACTGCCGTTCGGTACAATCTGGAC AGAACTCTTACCATTATTTATTATCTTTCTGTACTGTAGTGCTAGAACTGAATTGATCGTAACCTATCCATACAATGATG TTAGTATCTGAAATGGAATAATCTCTATCTTCTGTATAGCTTCATCAATTTGACATTTTATTTTCATTTTTTTGCTTTAT ATCTCAATATCTCAATGATCAGTTTATCCCTACTTTTACTCTCATCAGCACTAATGGATCACCATGCTAATTATTTCCAG TTTACCATTCCTGGAGCTAAAACATGTTTACCCAAATTTTCACACTAAACACCATCATAATGGCATTGTGCGCTAGTTAC TTTGATCCCTGTTGTCACCGCATAATATATCTGTGCTGTTATACTCATTACTAACTTTGAACCATATACTCTTATCTTCC AGCCAAATCAAAATAATATATAAAGCTATATTTTTCCATTTACTATAACTAAGGTCTGCATTTGAGCCCTTGTGTGTTCT AAGAGTCAGTGTTTGTGATGCATGCTTTTTGTAGATTATGTAATCTTGGTTGCAGAGTAGAAAGAAGAAATTAAATGAAG TTAGAGCTATGGAGACAATCTTTTGAAAGCACATCAGTTTTAGTGAAGTAGAGGAAAACTATGTGGAATGACACTTTTGC CAGAGAGATATTAATTCTAGATTAGATGTGAGAATCGGAGCACATTCCATATCACAAGTCCTACAATTTCAGTATCTTTG GTCGGTTATAGAAAATGATAGGGAATAATAGGCAATGAATAGAGATAGGGAATGCTTTGGTGTAGTTTATGATAGACAAT CACGTAGAAGCTTAGGGGAAATTATACCGCACAAGTATATGATGTGTGATTTTGTAATATTAGGTGGTAAATAGCCAAAA CATACAGTAAGATTAATACCTACATAAAAGAGAATGTTACTAGGATGCGTCATGCGTGTCACACAAGACGAGATAGAATG ATAAATGAAAGCATTGGAGGGAATGTTAAGATAGCAGCTACGGTAAAATAGATTGTAGATCTCATCTCACTTTAGGTTGG TTTGGACATGTGCTAAGAAGAATTGTAGTGCCAATTCTGAGGGCAGATCAGATAGAGGATAGTCCAATAGTTAGAATAAA AGCATAAGGAGACCAAAGAAAATTATTAATTGAACTATTAAAAAAGAGTTGGGGTTAAATTATCTATCAATGGACATGAT TCATTATAGGACATTACGGTGTATTTGATCCATGTATCTGAACCCAACTAGTGAGAAAAAGGCTTTGACTATTGTTGTTG TTTTTCTATGAGAGGCATCTATAGTTATGTGTATCCAGGATGTTTGGAAATTGTTACTTCAACAACATTTTACTGTTGTA AGTTCAATGCAACATCAATATCTCTTTGCTTACCAGAAGTGGTATGCATTGCATTATTTCATTATATTTATGACCAAAAA CTTTTGCTTCTTTGTGCATTGCTTTTGAATTAGTTCTCATGTTTTATTTTATGCTTTCTATAAATTGACTTCAACCGTAA TAGTTCTGCTGTTTGTACTAACCTTCAAATGGAACAGGATGATGAGAATGCCCTACTCCAGCAGGCACTTGCAATGTCAA TGGATGACCCTGTGAGTAGCCATGATGTAAAAGATACGGATATGTCAGAAGCACCTGCAGATGACCCTGATTTGGCACTA GGTGAACTTTTGTTGTTTATGCATTCTGGCATGGACTTGGGACACGACATAGTCATAGAGACGGCAATATGGAACAATTT AGATAGGTGCTCCATTAGGCACTTAAGTGTCACATGGTGTCTGATATGTCTCCAACGTGAAAACATGGATGCAACTCCTT TTCTATGTGTCTAATTATGCTTCACAGTTCCTCCATCAAACATGGTTGAGTTTTTGCAAGTGTTTCTACATCTAGTATCA ATGGGAAGTGCTTTGTTTATAGTCATATTTTTTTAATGTTTGAACTGAGTTATGGAGTTGAAGAGACTTAATAAACTTTT TAAAATTCAGTATGGTGCAGGGGATTTCTTCATCTGTTTGCATTTAATAAACTAGAGTGTTCTTATTTCTTTTGTTTTGA AGGAATGATTTCAATGGGTAGGTATTTGCTAGTATACATTCACATATTTTTCAGCTAACTCCTTCTTTTGAGGATTTGGT TTAGTAAAAGGGTAGTCTGAATATGGGGTTCTATTAACTTGCATTTTCTTAGAATTTCTAAAACACAGTAAACCCATGGT GCTTGTTATAATGTTTTATTGGTTTCTGGTCATATTGCTTGCAGCTCTCCAATTGTCAGTAGCAGATGGCACAAAGGATT CAGGAAGCCAGTCGTCAGACATGAGTAAATTGTTGGCAGATCAATCTTTTGTATCTTCTATCCTTGCATCGGTATGTCTG AAAAGTCCTGTAATTATCTGTGTTGTTTGTTTAACATAATAGCTTGATGTGCTATATTGCTTCTGCAGCTTCCAGGGGTT GACCCAAATGACCCTTCTGTCAAAGATTTACTGGCCTCCATGCAAAATCAATCTGAGGTGAGTCTTTCTAAGGAAAAGTG TACATTGGATTTGAAATGAATTTTGTAGAAAATTTGAGCACAGACATAATTAGATTACTTGGCCTATTTTTCCCCTTTCC TTTTTGACTTATTTTGGAGGGTTGATATTGTACTTGAAGGACAAGAACAAGACAGTTCCTGGCTCCTGCTGCTAGCATAT TTTAA
CDS sequence (LotjaGi2g1v0380200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCTTGCTGCCGGCATTCAAGTTGCGCAGTTGGCTCTTAAGCATCGGCAAAATAAAAAGCAGCAGCAACGGATTGT TGTTTTTGCTGGAAGTCCTGTTAAGCATGAAAAGAAAATGCTGGAGATGATAGGGAGGAAGCTGAAAAAGAATAGTGTAG CACTTGATATTATTAATTTTGGTGAAGAAGATGAGGGGAAGACGGAGAAGCTGGAAGCTCTTCTTGCGGCTGTTAACAAT AATGATAGCAGCCACATTGTTTCTGTTCCACCTGGTCCAAATGCTCTTTCTGATGTACTGATAAGTACACCTATATTTAC TGGTGATGGGGAAGGTGGAAGTGGTTTTGCCGCTGCTGCTGCCGCAGCTGCAGCTGGTGGTGTATCTGGATATGAGTTTG GTGTTGATCCAAACTTGGATCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCCAGGCAGGAAGCA GCAGCCAAGAAGGCTGCAGAGGAGGCGGCCAACCAAGAGAAAGGAGGTGAAACCAGCTCCCAAGATGCAACAATGACTGA ACGTGCCAGTGCAGCCACTTCTGAAGCTGAGAATAAAACAATTGATTTAATGGATGATGAGAATGCCCTACTCCAGCAGG CACTTGCAATGTCAATGGATGACCCTGTGAGTAGCCATGATGTAAAAGATACGGATATGTCAGAAGCACCTGCAGATGAC CCTGATTTGGCACTAGCTCTCCAATTGTCAGTAGCAGATGGCACAAAGGATTCAGGAAGCCAGTCGTCAGACATGAGTAA ATTGTTGGCAGATCAATCTTTTGTATCTTCTATCCTTGCATCGCTTCCAGGGGTTGACCCAAATGACCCTTCTGTCAAAG ATTTACTGGCCTCCATGCAAAATCAATCTGAGTTGAAGGACAAGAACAAGACAGTTCCTGGCTCCTGCTGCTAG
Protein sequence (LotjaGi2g1v0380200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLAAGIQVAQLALKHRQNKKQQQRIVVFAGSPVKHEKKMLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLAAVNN NDSSHIVSVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYEFGVDPNLDPELALALRVSMEEERARQEA AAKKAAEEAANQEKGGETSSQDATMTERASAATSEAENKTIDLMDDENALLQQALAMSMDDPVSSHDVKDTDMSEAPADD PDLALALQLSVADGTKDSGSQSSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSELKDKNKTVPGSCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 102 | 102 | 5.2E-33 | ||
| PANTHER | 1 | 313 | 313 | 4.9E-188 | – | |
| PANTHER | 1 | 313 | 313 | 4.9E-188 | – | |
| SUPERFAMILY | 2 | 85 | 84 | 1.63E-10 | ||
| SMART | 138 | 157 | 20 | 11.0 | ||
| ProSiteProfiles | 138 | 157 | 20 | 8.935 | ||
| Pfam | 140 | 153 | 14 | 0.45 | ||
| Coils | 148 | 173 | 26 | - | – | |
| MobiDBLite | 158 | 201 | 44 | - | – | |
| MobiDBLite | 173 | 197 | 25 | - | – | |
| ProSiteProfiles | 206 | 225 | 20 | 8.718 | ||
| SMART | 206 | 225 | 20 | 4.8 | ||
| Pfam | 206 | 221 | 16 | 0.034 | ||
| MobiDBLite | 219 | 238 | 20 | - | – | |
| SMART | 238 | 257 | 20 | 36.0 | ||
| Pfam | 239 | 252 | 14 | 0.41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0380200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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