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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003903
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 41 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.523s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0098339.2
n.a. UBX domain-containing protein [Arabidopsis thaliana] gi|42570051|ref|NP_680549.3| chr0 41617437 41621261 -
3 domain predictions
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Lj0g3v0281489.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like isoform 1 [Glycine max] gi|356559272|ref|XP_003547924.1| chr0 145917144 145925030 -
4 domain predictions
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Lj1g3v0180970.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Glycine max] gi|356551781|ref|XP_003544252.1| chr1 2075745 2092386 +
2 domain predictions
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Lj1g3v1526280.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356518443|ref|XP_003527888.1| chr1 18272805 18292132 +
2 domain predictions
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Lj2g3v1691080.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max] gi|356496629|ref|XP_003517168.1| chr2 26096400 26100735 -
4 domain predictions
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Lj2g3v1691080.2
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max] gi|356496629|ref|XP_003517168.1| chr2 26096400 26101388 -
4 domain predictions
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Lj2g3v1828370.1
n.a. PREDICTED: protein DA1-related 1-like isoform 1 [Glycine max] gi|356496814|ref|XP_003517260.1| chr2 27412166 27418801 -
3 domain predictions
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Lj2g3v2017300.1
n.a. Ara4-interacting protein [Arabidopsis thaliana] gi|13160609|dbj|BAB32954.1| chr2 30772339 30776318 -
2 domain predictions
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Lj3g3v1461480.1
n.a. LOC100282842 [Zea mays] gi|226532516|ref|NP_001149220.1| chr3 18673091 18686302 -
3 domain predictions
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Lj4g3v0217750.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356512215|ref|XP_003524816.1| chr4 2777939 2794774 -
2 domain predictions
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Lj4g3v0217760.1
n.a. n.a. chr4 2786227 2790836 +
2 domain predictions
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Lj5g3v0083000.1
n.a. PREDICTED: protein DA1-like isoform X1 [Cicer arietinum] gi|502125921|ref|XP_004499115.1| chr5 461619 469718 +
4 domain predictions
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Lj5g3v1950950.1
n.a. PREDICTED: protein FAM188A homolog isoform X2 [Cicer arietinum] gi|502119017|ref|XP_004496476.1| chr5 27557698 27566774 +
3 domain predictions
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LotjaGi1g1v0135300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791156 21808026 +
2 domain predictions
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LotjaGi1g1v0135300.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21806305 +
2 domain predictions
 –
LotjaGi1g1v0135300.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
 –
LotjaGi1g1v0135300.4
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
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LotjaGi1g1v0135300.5
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
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LotjaGi1g1v0342400.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80457990 80472977 +
2 domain predictions
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LotjaGi1g1v0342400.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80458458 80472724 +
2 domain predictions
 –
LotjaGi1g1v0342400.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80459623 80472724 +
2 domain predictions
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LotjaGi2g1v0380200.1
n.a. 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|I3RZP6|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200 LjG1.1_chr2 87681860 87687608 -
4 domain predictions
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LotjaGi2g1v0380200.2
n.a. 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|I3RZP6|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200 LjG1.1_chr2 87683086 87687010 -
4 domain predictions
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LotjaGi2g1v0380200.3
n.a. 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|I3RZP6|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200 LjG1.1_chr2 87683086 87687438 -
4 domain predictions
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LotjaGi2g1v0380200.4
n.a. 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|I3RZP6|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200 LjG1.1_chr2 87683232 87687438 -
3 domain predictions
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LotjaGi2g1v0380200.5
n.a. 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|I3RZP6|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200 LjG1.1_chr2 87683933 87687438 -
4 domain predictions
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LotjaGi2g1v0395000.1
n.a. Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp|Q8W4F0|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr|A0A0B2RSU7|A0A0B2RSU7_GLYSO DA-related 1 protein 1; Found in the gene: LotjaGi2g1v0395000 LjG1.1_chr2 89256379 89263288 -
3 domain predictions
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LotjaGi3g1v0376600.1
n.a. UBX domain-containing protein 2; TAIR: AT4G00752.1 UBX domain-containing protein; Swiss-Prot: sp|Q4V3D3|PUX9_ARATH Plant UBX domain-containing protein 9; TrEMBL-Plants: tr|A0A072TZJ6|A0A072TZJ6_MEDTR Ara4-interacting protein; Found in the gene: LotjaGi3g1v0376600 LjG1.1_chr3 76910606 76924675 -
3 domain predictions
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LotjaGi3g1v0376600.2
n.a. FAS-associated factor 2-B; TAIR: AT4G11740.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|F4JPR7|PUX8_ARATH Plant UBX domain-containing protein 8; TrEMBL-Plants: tr|A0A1J7HI96|A0A1J7HI96_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376600 LjG1.1_chr3 76910606 76924765 -
4 domain predictions
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LotjaGi4g1v0020600.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K373|I1K373_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2550963 2567864 -
2 domain predictions
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LotjaGi4g1v0020600.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2552178 2566487 -
2 domain predictions
 –
LotjaGi4g1v0020600.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2552178 2566487 -
2 domain predictions
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LotjaGi4g1v0114100.1
n.a. Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp|Q8W4F0|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr|K7K6P3|K7K6P3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0114100 LjG1.1_chr4 16504627 16511792 +
3 domain predictions
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LotjaGi4g1v0129500.1
n.a. 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|A0A0B2PG91|A0A0B2PG91_GLYSO 26S proteasome non-ATPase regulatory subunit 4; Found in the gene: LotjaGi4g1v0129500 LjG1.1_chr4 18948606 18956685 -
4 domain predictions
 –
LotjaGi4g1v0129500.2
n.a. 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|A0A151SJL6|A0A151SJL6_CAJCA 26S proteasome non-ATPase regulatory subunit 4; Found in the gene: LotjaGi4g1v0129500 LjG1.1_chr4 18951908 18956483 -
4 domain predictions
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LotjaGi4g1v0129500.3
n.a. 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|A0A151SJL6|A0A151SJL6_CAJCA 26S proteasome non-ATPase regulatory subunit 4; Found in the gene: LotjaGi4g1v0129500 LjG1.1_chr4 18951922 18956483 -
4 domain predictions
 –
LotjaGi5g1v0019700.1
n.a. Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp|P0C7Q8|DA1_ARATH Protein DA1; TrEMBL-Plants: tr|A0A151RWT7|A0A151RWT7_CAJCA LIM and UIM domain-containing family; Found in the gene: LotjaGi5g1v0019700 LjG1.1_chr5 3724701 3735033 -
3 domain predictions
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LotjaGi5g1v0019700.2
n.a. Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp|P0C7Q8|DA1_ARATH Protein DA1; TrEMBL-Plants: tr|A0A0L9TTM7|A0A0L9TTM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0019700 LjG1.1_chr5 3725807 3733969 -
3 domain predictions
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LotjaGi5g1v0019700.3
n.a. Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp|P0C7Q8|DA1_ARATH Protein DA1; TrEMBL-Plants: tr|A0A151RWT7|A0A151RWT7_CAJCA LIM and UIM domain-containing family; Found in the gene: LotjaGi5g1v0019700 LjG1.1_chr5 3725807 3733969 -
3 domain predictions
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LotjaGi5g1v0291300.1
n.a. Ubiquitin interaction motif protein; TAIR: AT1G43690.1 ubiquitin interaction motif-containing protein; Swiss-Prot: sp|Q9CV28|F188A_MOUSE Ubiquitin carboxyl-terminal hydrolase FAM188A; TrEMBL-Plants: tr|G7ICZ5|G7ICZ5_MEDTR Ubiquitin interaction motif protein; Found in the gene: LotjaGi5g1v0291300 LjG1.1_chr5 60833924 60848964 +
3 domain predictions
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LotjaGi5g1v0291300.2
n.a. Ubiquitin interaction motif protein; TAIR: AT1G43690.1 ubiquitin interaction motif-containing protein; Swiss-Prot: sp|Q9CV28|F188A_MOUSE Ubiquitin carboxyl-terminal hydrolase FAM188A; TrEMBL-Plants: tr|G7ICZ5|G7ICZ5_MEDTR Ubiquitin interaction motif protein; Found in the gene: LotjaGi5g1v0291300 LjG1.1_chr5 60834400 60848109 +
3 domain predictions
 –