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LotjaGi2g1v0380900.4

Overview

Field Value
Gene ID LotjaGi2g1v0380900
Transcript ID LotjaGi2g1v0380900.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Armadillo repeat only; TAIR: AT5G66200.1 armadillo repeat only 2; Swiss-Prot: sp|Q59MN0|VAC8_CANAL Vacuolar protein 8; TrEMBL-Plants: tr|B7FF14|B7FF14_MEDTR ARO1-like protein 1; Found in the gene: LotjaGi2g1v0380900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:87742973..87744988) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGGACTTAGTGAAACAAATCCTTGCTAAACCGATCCAGCTGGCCGACCAAGTAACCAAAGCCGCCGATGAAGCCAG CTTCTTCAAGCAGGAATGCTTCGAGCTCAAGTCCAAGACAGAAAAACTCGCCGCGCTGCTCCGGCAGGCGGCCAGAGCCA GCTCCGACCTCTACGAACGCCCTACCCGGCGGATCATTGAGGAAACAGAGCAAGTTCTTGACAAGGCACTGTCATTGGTC ATCAAGTGCCGTGCTAATGGCCTCATGAAGCGCGTCTTCACCATCGTCCCCGCCGCCGCCTTCCGGAAGACTTCCTCCCA TCTCGAGAATTCCATCGGAGATGTCTCCTGGCTCCTCCGTGTCTCCGCCCCTGCTGACGACCGAGGAGATGAGTATCTTG GACTTCCTCCCATCGCTGCCAACGAGCCTATCTTGTGTCTCATATGGGAGCAGATCGCTATACTTTACACCGGCTCGCCG GAGGATCGCTCCGACGCGGCAGCCTCGCTGGTTTCCCTCGCTCGCGGCAGCGACCGGTACGGGAAGCTTATCATAGAAGA AGGTGGAGTTGGTCCACTGTTGAAGCTCATCAAGGAAGGGAAGATGGAAGGTCAGGAAAACGCAGCAAGAGTAATCGGCC TCCTTGGCCGTGACCCTGAAAGCGTGGAGGTAATGATCCACGCCGGAGTTTGCTCCGTCTTCGCGAAGGTTCTTAAAGAA GCTCCGATGAAGGTTCAGGCCGTTGTGGCCTGGGCGGTGTCGGAGCTTGCTGCTAACTACCCAAAATGTCAGGACCTTTT TGCTCAGCACAATATTATAAGGTTGCTGGTTGGCCATCTTGCTTTTGAGACGGTGGAGGAGCATAGCAAGTATGCTATTG TTAGCATGAAACCTACTTCGATCCACGCGGTGGTGATGGCGAATACAAACAATCCCAAGAAGGGAAATGAGAATGCAGAT GGAGATAACAAGCAAGCACAGGGTCTGAATCGGTCACTACATCATCCCTTGGGTGAAAGGCCAAGAAATTTGCATAGGGT GATCACTAGTACAATGGCTATGCATAATGTTACCAAGCAAGGGCCTAATCAGGAAAATGAAGCAAACCAAAATCAGAACT CTTTAGCCAATGGAATTGGTAATGATGGGAAGCAAGGAAATCAACCCCTCCATCATAATCAGAATCAGACTAATCATCAG CGTAACTATTCGCATTCGGGGATTAACATGAAGGGAAGGGATAATGAAGACCCTGAGACAAAGGCTAGCATGAAGGAAAT GGCAGCAAGGGCACTCTGGCACTTGGCTAAGGGTAATGTCCCGATTTGTCGTAGCATCACGGAATCGAGAGCTTTGTTGT GCTTTGCTGTTCTCCTTGAGAAAGGAGAGGAGAAGGTGCAGTACAATTCGGCCATGGCGGTGATGGAGATCACTGCTGTG GCTGAGAAAGATGCTGATTTGAGAAAGTCTGCATTCAAGCCAAACTCCCCTGCCTGCAAAGCGGTTGTTGATCAATTGCT TAAGATAATTGAGAAGGCAGATTCAGATCTCCTCATTCCTTGTGTCAGTGCTATTGGGAATTTGGCAAGGACTTTTCGTG CCACGGAGACGAGGATGATCGGTCCCTTGGTGCGGCTTCTTGATGAAAGAGAGGCAGAGGTATACAGGGAGGCGTCCATC GCCCTCACGAAATTCGCCTGCACTGAGAACTACCTTCACCTTGATCACTCCAAGGCGATTATAACCGCAGGCGGGGCTAA ACACTTGATTCAGCTTGTGTATTTCGGAGAACAGATGGTTCAGATTCCTGCATTAGTTCTGCTCTCCTACATTGCGCTGC ACGTCCCGGACAGCGAAGAGCTTGCTCAGGATGAGGTGTTGGGAGTGCTTGAATGGGCATCAAAGCAATCTTCCATGACA CATGATGAAACCCTTGAGGCTTTGCTGCAAGAATCCAAGAGTAGATTGGAGCTTTACCAGTCCAGAGGCTCAAGATTCCA TAAATTACACCAATAG 

CDS sequence (LotjaGi2g1v0380900.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGACTTAGTGAAACAAATCCTTGCTAAACCGATCCAGCTGGCCGACCAAGTAACCAAAGCCGCCGATGAAGCCAG CTTCTTCAAGCAGGAATGCTTCGAGCTCAAGTCCAAGACAGAAAAACTCGCCGCGCTGCTCCGGCAGGCGGCCAGAGCCA GCTCCGACCTCTACGAACGCCCTACCCGGCGGATCATTGAGGAAACAGAGCAAGTTCTTGACAAGGCACTGTCATTGGTC ATCAAGTGCCGTGCTAATGGCCTCATGAAGCGCGTCTTCACCATCGTCCCCGCCGCCGCCTTCCGGAAGACTTCCTCCCA TCTCGAGAATTCCATCGGAGATGTCTCCTGGCTCCTCCGTGTCTCCGCCCCTGCTGACGACCGAGGAGATGAGTATCTTG GACTTCCTCCCATCGCTGCCAACGAGCCTATCTTGTGTCTCATATGGGAGCAGATCGCTATACTTTACACCGGCTCGCCG GAGGATCGCTCCGACGCGGCAGCCTCGCTGGTTTCCCTCGCTCGCGGCAGCGACCGGTACGGGAAGCTTATCATAGAAGA AGGTGGAGTTGGTCCACTGTTGAAGCTCATCAAGGAAGGGAAGATGGAAGGTCAGGAAAACGCAGCAAGAGTAATCGGCC TCCTTGGCCGTGACCCTGAAAGCGTGGAGGTAATGATCCACGCCGGAGTTTGCTCCGTCTTCGCGAAGGTTCTTAAAGAA GCTCCGATGAAGGTTCAGGCCGTTGTGGCCTGGGCGGTGTCGGAGCTTGCTGCTAACTACCCAAAATGTCAGGACCTTTT TGCTCAGCACAATATTATAAGGTTGCTGGTTGGCCATCTTGCTTTTGAGACGGTGGAGGAGCATAGCAAGTATGCTATTG TTAGCATGAAACCTACTTCGATCCACGCGGTGGTGATGGCGAATACAAACAATCCCAAGAAGGGAAATGAGAATGCAGAT GGAGATAACAAGCAAGCACAGGGTCTGAATCGGTCACTACATCATCCCTTGGGTGAAAGGCCAAGAAATTTGCATAGGGT GATCACTAGTACAATGGCTATGCATAATGTTACCAAGCAAGGGCCTAATCAGGAAAATGAAGCAAACCAAAATCAGAACT CTTTAGCCAATGGAATTGGTAATGATGGGAAGCAAGGAAATCAACCCCTCCATCATAATCAGAATCAGACTAATCATCAG CGTAACTATTCGCATTCGGGGATTAACATGAAGGGAAGGGATAATGAAGACCCTGAGACAAAGGCTAGCATGAAGGAAAT GGCAGCAAGGGCACTCTGGCACTTGGCTAAGGGTAATGTCCCGATTTGTCGTAGCATCACGGAATCGAGAGCTTTGTTGT GCTTTGCTGTTCTCCTTGAGAAAGGAGAGGAGAAGGTGCAGTACAATTCGGCCATGGCGGTGATGGAGATCACTGCTGTG GCTGAGAAAGATGCTGATTTGAGAAAGTCTGCATTCAAGCCAAACTCCCCTGCCTGCAAAGCGGTTGTTGATCAATTGCT TAAGATAATTGAGAAGGCAGATTCAGATCTCCTCATTCCTTGTGTCAGTGCTATTGGGAATTTGGCAAGGACTTTTCGTG CCACGGAGACGAGGATGATCGGTCCCTTGGTGCGGCTTCTTGATGAAAGAGAGGCAGAGGTATACAGGGAGGCGTCCATC GCCCTCACGAAATTCGCCTGCACTGAGAACTACCTTCACCTTGATCACTCCAAGGCGATTATAACCGCAGGCGGGGCTAA ACACTTGATTCAGCTTGTGTATTTCGGAGAACAGATGGTTCAGATTCCTGCATTAGTTCTGCTCTCCTACATTGCGCTGC ACGTCCCGGACAGCGAAGAGCTTGCTCAGGATGAGGTGTTGGGAGTGCTTGAATGGGCATCAAAGCAATCTTCCATGACA CATGATGAAACCCTTGAGGCTTTGCTGCAAGAATCCAAGAGTAGATTGGAGCTTTACCAGTCCAGAGGCTCAAGATTCCA TAAATTACACCAATAG 

Protein sequence (LotjaGi2g1v0380900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADLVKQILAKPIQLADQVTKAADEASFFKQECFELKSKTEKLAALLRQAARASSDLYERPTRRIIEETEQVLDKALSLV IKCRANGLMKRVFTIVPAAAFRKTSSHLENSIGDVSWLLRVSAPADDRGDEYLGLPPIAANEPILCLIWEQIAILYTGSP EDRSDAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIKEGKMEGQENAARVIGLLGRDPESVEVMIHAGVCSVFAKVLKE APMKVQAVVAWAVSELAANYPKCQDLFAQHNIIRLLVGHLAFETVEEHSKYAIVSMKPTSIHAVVMANTNNPKKGNENAD GDNKQAQGLNRSLHHPLGERPRNLHRVITSTMAMHNVTKQGPNQENEANQNQNSLANGIGNDGKQGNQPLHHNQNQTNHQ RNYSHSGINMKGRDNEDPETKASMKEMAARALWHLAKGNVPICRSITESRALLCFAVLLEKGEEKVQYNSAMAVMEITAV AEKDADLRKSAFKPNSPACKAVVDQLLKIIEKADSDLLIPCVSAIGNLARTFRATETRMIGPLVRLLDEREAEVYREASI ALTKFACTENYLHLDHSKAIITAGGAKHLIQLVYFGEQMVQIPALVLLSYIALHVPDSEELAQDEVLGVLEWASKQSSMT HDETLEALLQESKSRLELYQSRGSRFHKLHQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 665 665 0.0
PANTHER 1 665 665 0.0
Coils 36 56 21 -
Gene3D 148 309 162 1.8E-21
SUPERFAMILY 153 639 487 3.17E-43
SMART 177 217 41 20.0
SMART 218 258 41 0.38
MobiDBLite 309 341 33 -
MobiDBLite 309 330 22 -
MobiDBLite 360 409 50 -
MobiDBLite 360 418 59 -
Gene3D 412 655 244 8.8E-22
SMART 439 479 41 86.0
SMART 495 530 36 7.2
SMART 573 613 41 5.7

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0380900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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