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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0380900 |
| Transcript ID | LotjaGi2g1v0380900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Armadillo repeat only; TAIR: AT5G66200.1 armadillo repeat only 2; Swiss-Prot: sp|Q59MN0|VAC8_CANAL Vacuolar protein 8; TrEMBL-Plants: tr|B7FF14|B7FF14_MEDTR ARO1-like protein 1; Found in the gene: LotjaGi2g1v0380900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87742973..87744988) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGACTTAGTGAAACAAATCCTTGCTAAACCGATCCAGCTGGCCGACCAAGTAACCAAAGCCGCCGATGAAGCCAG CTTCTTCAAGCAGGAATGCTTCGAGCTCAAGTCCAAGACAGAAAAACTCGCCGCGCTGCTCCGGCAGGCGGCCAGAGCCA GCTCCGACCTCTACGAACGCCCTACCCGGCGGATCATTGAGGAAACAGAGCAAGTTCTTGACAAGGCACTGTCATTGGTC ATCAAGTGCCGTGCTAATGGCCTCATGAAGCGCGTCTTCACCATCGTCCCCGCCGCCGCCTTCCGGAAGACTTCCTCCCA TCTCGAGAATTCCATCGGAGATGTCTCCTGGCTCCTCCGTGTCTCCGCCCCTGCTGACGACCGAGGAGATGAGTATCTTG GACTTCCTCCCATCGCTGCCAACGAGCCTATCTTGTGTCTCATATGGGAGCAGATCGCTATACTTTACACCGGCTCGCCG GAGGATCGCTCCGACGCGGCAGCCTCGCTGGTTTCCCTCGCTCGCGGCAGCGACCGGTACGGGAAGCTTATCATAGAAGA AGGTGGAGTTGGTCCACTGTTGAAGCTCATCAAGGAAGGGAAGATGGAAGGTCAGGAAAACGCAGCAAGAGTAATCGGCC TCCTTGGCCGTGACCCTGAAAGCGTGGAGGTAATGATCCACGCCGGAGTTTGCTCCGTCTTCGCGAAGGTTCTTAAAGAA GCTCCGATGAAGGTTCAGGCCGTTGTGGCCTGGGCGGTGTCGGAGCTTGCTGCTAACTACCCAAAATGTCAGGACCTTTT TGCTCAGCACAATATTATAAGGTTGCTGGTTGGCCATCTTGCTTTTGAGACGGTGGAGGAGCATAGCAAGTATGCTATTG TTAGCATGAAACCTACTTCGATCCACGCGGTGGTGATGGCGAATACAAACAATCCCAAGAAGGGAAATGAGAATGCAGAT GGAGATAACAAGCAAGCACAGGGTCTGAATCGGTCACTACATCATCCCTTGGGTGAAAGGCCAAGAAATTTGCATAGGGT GATCACTAGTACAATGGCTATGCATAATGTTACCAAGCAAGGGCCTAATCAGGAAAATGAAGCAAACCAAAATCAGAACT CTTTAGCCAATGGAATTGGTAATGATGGGAAGCAAGGAAATCAACCCCTCCATCATAATCAGAATCAGACTAATCATCAG CGTAACTATTCGCATTCGGGGATTAACATGAAGGGAAGGGATAATGAAGACCCTGAGACAAAGGCTAGCATGAAGGAAAT GGCAGCAAGGGCACTCTGGCACTTGGCTAAGGGTAATGTCCCGATTTGTCGTAGCATCACGGAATCGAGAGCTTTGTTGT GCTTTGCTGTTCTCCTTGAGAAAGGAGAGGAGAAGGTGCAGTACAATTCGGCCATGGCGGTGATGGAGATCACTGCTGTG GCTGAGAAAGATGCTGATTTGAGAAAGTCTGCATTCAAGCCAAACTCCCCTGCCTGCAAAGCGGTTGTTGATCAATTGCT TAAGATAATTGAGAAGGCAGATTCAGATCTCCTCATTCCTTGTGTCAGTGCTATTGGGAATTTGGCAAGGACTTTTCGTG CCACGGAGACGAGGATGATCGGTCCCTTGGTGCGGCTTCTTGATGAAAGAGAGGCAGAGGTATACAGGGAGGCGTCCATC GCCCTCACGAAATTCGCCTGCACTGAGAACTACCTTCACCTTGATCACTCCAAGGCGATTATAACCGCAGGCGGGGCTAA ACACTTGATTCAGCTTGTGTATTTCGGAGAACAGATGGTTCAGATTCCTGCATTAGTTCTGCTCTCCTACATTGCGCTGC ACGTCCCGGACAGCGAAGAGCTTGCTCAGGATGAGGTGTTGGGAGTGCTTGAATGGGCATCAAAGCAATCTTCCATGACA CATGATGAAACCCTTGAGGCTTTGCTGCAAGAATCCAAGAGTAGATTGGAGCTTTACCAGTCCAGAGGCTCAAGATTCCA TAAATTACACCAATAG
CDS sequence (LotjaGi2g1v0380900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGACTTAGTGAAACAAATCCTTGCTAAACCGATCCAGCTGGCCGACCAAGTAACCAAAGCCGCCGATGAAGCCAG CTTCTTCAAGCAGGAATGCTTCGAGCTCAAGTCCAAGACAGAAAAACTCGCCGCGCTGCTCCGGCAGGCGGCCAGAGCCA GCTCCGACCTCTACGAACGCCCTACCCGGCGGATCATTGAGGAAACAGAGCAAGTTCTTGACAAGGCACTGTCATTGGTC ATCAAGTGCCGTGCTAATGGCCTCATGAAGCGCGTCTTCACCATCGTCCCCGCCGCCGCCTTCCGGAAGACTTCCTCCCA TCTCGAGAATTCCATCGGAGATGTCTCCTGGCTCCTCCGTGTCTCCGCCCCTGCTGACGACCGAGGAGATGAGTATCTTG GACTTCCTCCCATCGCTGCCAACGAGCCTATCTTGTGTCTCATATGGGAGCAGATCGCTATACTTTACACCGGCTCGCCG GAGGATCGCTCCGACGCGGCAGCCTCGCTGGTTTCCCTCGCTCGCGGCAGCGACCGGTACGGGAAGCTTATCATAGAAGA AGGTGGAGTTGGTCCACTGTTGAAGCTCATCAAGGAAGGGAAGATGGAAGGTCAGGAAAACGCAGCAAGAGTAATCGGCC TCCTTGGCCGTGACCCTGAAAGCGTGGAGGTAATGATCCACGCCGGAGTTTGCTCCGTCTTCGCGAAGGTTCTTAAAGAA GCTCCGATGAAGGTTCAGGCCGTTGTGGCCTGGGCGGTGTCGGAGCTTGCTGCTAACTACCCAAAATGTCAGGACCTTTT TGCTCAGCACAATATTATAAGGTTGCTGGTTGGCCATCTTGCTTTTGAGACGGTGGAGGAGCATAGCAAGTATGCTATTG TTAGCATGAAACCTACTTCGATCCACGCGGTGGTGATGGCGAATACAAACAATCCCAAGAAGGGAAATGAGAATGCAGAT GGAGATAACAAGCAAGCACAGGGTCTGAATCGGTCACTACATCATCCCTTGGGTGAAAGGCCAAGAAATTTGCATAGGGT GATCACTAGTACAATGGCTATGCATAATGTTACCAAGCAAGGGCCTAATCAGGAAAATGAAGCAAACCAAAATCAGAACT CTTTAGCCAATGGAATTGGTAATGATGGGAAGCAAGGAAATCAACCCCTCCATCATAATCAGAATCAGACTAATCATCAG CGTAACTATTCGCATTCGGGGATTAACATGAAGGGAAGGGATAATGAAGACCCTGAGACAAAGGCTAGCATGAAGGAAAT GGCAGCAAGGGCACTCTGGCACTTGGCTAAGGGTAATGTCCCGATTTGTCGTAGCATCACGGAATCGAGAGCTTTGTTGT GCTTTGCTGTTCTCCTTGAGAAAGGAGAGGAGAAGGTGCAGTACAATTCGGCCATGGCGGTGATGGAGATCACTGCTGTG GCTGAGAAAGATGCTGATTTGAGAAAGTCTGCATTCAAGCCAAACTCCCCTGCCTGCAAAGCGGTTGTTGATCAATTGCT TAAGATAATTGAGAAGGCAGATTCAGATCTCCTCATTCCTTGTGTCAGTGCTATTGGGAATTTGGCAAGGACTTTTCGTG CCACGGAGACGAGGATGATCGGTCCCTTGGTGCGGCTTCTTGATGAAAGAGAGGCAGAGGTATACAGGGAGGCGTCCATC GCCCTCACGAAATTCGCCTGCACTGAGAACTACCTTCACCTTGATCACTCCAAGGCGATTATAACCGCAGGCGGGGCTAA ACACTTGATTCAGCTTGTGTATTTCGGAGAACAGATGGTTCAGATTCCTGCATTAGTTCTGCTCTCCTACATTGCGCTGC ACGTCCCGGACAGCGAAGAGCTTGCTCAGGATGAGGTGTTGGGAGTGCTTGAATGGGCATCAAAGCAATCTTCCATGACA CATGATGAAACCCTTGAGGCTTTGCTGCAAGAATCCAAGAGTAGATTGGAGCTTTACCAGTCCAGAGGCTCAAGATTCCA TAAATTACACCAATAG
Protein sequence (LotjaGi2g1v0380900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADLVKQILAKPIQLADQVTKAADEASFFKQECFELKSKTEKLAALLRQAARASSDLYERPTRRIIEETEQVLDKALSLV IKCRANGLMKRVFTIVPAAAFRKTSSHLENSIGDVSWLLRVSAPADDRGDEYLGLPPIAANEPILCLIWEQIAILYTGSP EDRSDAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIKEGKMEGQENAARVIGLLGRDPESVEVMIHAGVCSVFAKVLKE APMKVQAVVAWAVSELAANYPKCQDLFAQHNIIRLLVGHLAFETVEEHSKYAIVSMKPTSIHAVVMANTNNPKKGNENAD GDNKQAQGLNRSLHHPLGERPRNLHRVITSTMAMHNVTKQGPNQENEANQNQNSLANGIGNDGKQGNQPLHHNQNQTNHQ RNYSHSGINMKGRDNEDPETKASMKEMAARALWHLAKGNVPICRSITESRALLCFAVLLEKGEEKVQYNSAMAVMEITAV AEKDADLRKSAFKPNSPACKAVVDQLLKIIEKADSDLLIPCVSAIGNLARTFRATETRMIGPLVRLLDEREAEVYREASI ALTKFACTENYLHLDHSKAIITAGGAKHLIQLVYFGEQMVQIPALVLLSYIALHVPDSEELAQDEVLGVLEWASKQSSMT HDETLEALLQESKSRLELYQSRGSRFHKLHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 665 | 665 | 0.0 | – | |
| PANTHER | 1 | 665 | 665 | 0.0 | – | |
| Coils | 36 | 56 | 21 | - | – | |
| Gene3D | 148 | 309 | 162 | 1.8E-21 | ||
| SUPERFAMILY | 153 | 639 | 487 | 3.17E-43 | ||
| SMART | 177 | 217 | 41 | 20.0 | ||
| SMART | 218 | 258 | 41 | 0.38 | ||
| MobiDBLite | 309 | 341 | 33 | - | – | |
| MobiDBLite | 309 | 330 | 22 | - | – | |
| MobiDBLite | 360 | 409 | 50 | - | – | |
| MobiDBLite | 360 | 418 | 59 | - | – | |
| Gene3D | 412 | 655 | 244 | 8.8E-22 | ||
| SMART | 439 | 479 | 41 | 86.0 | ||
| SMART | 495 | 530 | 36 | 7.2 | ||
| SMART | 573 | 613 | 41 | 5.7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0380900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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