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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0384200 |
| Transcript ID | LotjaGi2g1v0384200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane and coiled-coil domain-containing protein 4; TAIR: AT4G36210.3 transmembrane/coiled-coil protein (DUF726); Swiss-Prot: sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3; TrEMBL-Plants: tr|A0A151TIT5|A0A151TIT5_CAJCA Putative membrane protein F35D11.3; Found in the gene: LotjaGi2g1v0384200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88058490..88065174) extracted from Lotus japonicus Gifu genome v1.2.
AGAATATGCTAAACTTTTGGTCTAATTGTATGTGAGTGCGATTATGAATTCAAGATGTCTGGATATGTGGATAAGAATGC CTTATTCGCCACGTGACGTCAAGTGCAAATTCAAGAAGCGTATTCAAGTATAGTTCTTCGAATTCCATTTGAAAACTAAA GTCTAATGTTTTAAACTGACAAGATGGTTAAATTAATCTCTGTTAGTCTAGTGAATTTTTTATTTTGTAGTTTTCCCTTT CCGTTATGTCTCTTAATATTTGTCACCCTCCCTAAAAGAGATCGCTAAGTTGTGTTGCTGATTTTTATTTTTTATCCTTA CCTTTTCATTGAAAATAATGCACAATGTCCTTAATTTTCTTTCAAAAATCCATAGACAACTTAGATAACCTTTAATCCAT AAGGTTGGACAAACAAGATTTATTCTTCAATATTTAATTTATCATCTATATTTAGTAGAGAAACATCAGTTATTAATTCT AATATTTCATTACGTGACATGTTTTATGTATTCATTTTAATGTCAATGACATGCTATGAATAACTCTTTCTCTCTTAGTA GTATGAGTTAATTTAACTTTTTTCCTAAACGGCAAGATAATAACTTATGCATACATACAAGTCAATACTCATAGCGATAG ATGGATAATGTTGGAATAAATGATGTAACCCTTTTTAAAAAATTGATACTTAAACATATAAAGTATAAACCGTTACTAAC ATCTAACATATACTTAATTTTTTTTTTCTCTATCTCAATTTTTGATATTATAAAATTGTTTTAGACCCAAAGTGCATATT TATTAAACTTATTTTTTCTTTTATTCATTTCTCACTTCAATTATTTATTGTATGATTCTTATGTGTGAATATATCATTTT TCCAACATCTTATATTATGGTAAGTTGAATTTGGAGAGAGTTTGGATATTCAATTCCGAGAACACGTCAGAGAAAGAAAC CGCGGTTTGAACTCCGATCGATGTGATCCTGATGATGGCGGCGACGTCGTATCTGACGCCGACGCAGCGCTACGCTGCCG GAGCATTGTTCAGCCTGTCTCTGCACCAAGCCCACCTTCACCAAACCCACCCGCTTGGCCTTTCAACCCACGATGAATTC CCTTCTCCCTCCACATCTTCTTCTACTCCCTTTTCCGTTTCCGAGGATCCCAACCTCTGGGTCCACCGCACTTCCGGTTT GCTCCGCCCTGTTTTCATGTATGCTTTCAATTTCAATCAAATCATGAATGTTCATCGCACCTTATTGATTTTCATGTATG AGTGTTGATTTGTGTGTTTCTGAGCAGGTTTCTGGAAATTGAACCTGGAGCATGGTCTGGACTTGAGGAAACTGCTGGCT CTACTTCAGCTTCCCGTCACGTTGGACCGGTATGTCTCCTCATTTCTAGCTTATACATGCTTGCTCATAAAGTAATGATG CATTCATGGTTAATTGGTTATGCTTTTTAATCTTTTGTTAATGTAAGTTAAATTTGATTATGTATGTGAATGTGACAGTA CTTGAGACTATTATCAGAAGAATTTGATATTGATGAAGATGGTGATTGTCAAAGGGCAGATCAAGAACTTGCTTTGTCAG AAGCTGTTGATGCTATGGTGCTTAGCCTGGAAAAAAATGCACAGGCTTCCAGGGCGAAACGAGAGAAGTTTCGCGAATAT GAGAATCAATGTCGTGAAAAGGTTTCGACTGCTGATGTTCAATCAGACTCTGAGGAGGTAGACATTCATTTGGAAATTCA GAAGGAGACCGATAGCCCTTTGACTCCTTTCTTTGAATGTGAAGACGTACACGAGGGATCTGTTAATCATGACATTGATG AGAGTCCAATTGAGGAGGTGATGAAGCTCAGCTATCAGAGGAAAGTGGCAGTTCTATATCAACTTCTTTCTGCTTGTCTT TCGGACTTAGGTGAAAAAAACGTTAAATATAATCGGAGAATAAAAGGCTATGATGCTCGACATCGTGTGGCTCTACGGTT GCTGGCAACTTGGCTTGATATCAAGTGGGAAAAAATGGTTTGTAAAGTGACTCTTGTAGTTATTGACTTTATTTTACTGG CCAACAACTTTTTTTAAGTTGAGTTGATCATGAAAAATAAGTGTAAGGGTTTTATACTATTTACTATGTACTGAAAAGAC ATGTAATCAATTAATCCTTGCTTTGGTGAGCACTGCCTATACATCATCTTGATTTCTAAGTTATGTATTGACCCTAATTC TAGGAAGCTATATGTTATAAGCTTTGTGTGAATTTTCTTCATTAACAGCTTATACTTACTGGTTCCATATCTTCTAGTGA TTACTGATTAAAATAAAACTTCACTTTGCAGGAGGCCATTGAGACTATACTAGCTAGTTCTGCAATGGCTTTCATTAAAG AGCAAGAATCAAATAAAGATGAAACTGAATCAAAAGAAAGCAAGTGGGCTAAATGGAAGCGAGGTGGCATTATTGGTGCT GCAGCGTTAACTGGGGGAACCTTGATGGCTATTACCGGTGGTATGATACATTAACATATTTTCTTTGTTCTGGAATACAA ATGTTAATTGAATGACTTTTCTTGTGGATTTGACTCTTTCCATCTGTGAGCATTAAACAGGATTAGCTGCCCCAGCAATT GCTGCAGGACTTGGTGCTTTGGCTCCAACGTTGGGTACTTTGATCCCTGTAATTGGAGCAAGTGGATTTGCAGCAGCTGC TAGTGCTGCAGGAACTGTTGCTGGTTCTGTTGCTGTTGCTGCCTCCTTTGGAGGTATATATTTGCCTATATGCAATTATA TTTTAATTTTACAAGGATTTTAAGTGTCTATTTATGAATTTCCGGTGTTGTTTAAGGAATAAGGATACTATCAGGAAATT CAGGATAACCAATCTTTATGCACGTGCTTATGTGTCTTAGAGGTGTATTTTGTTCAATTTGAGATTTTTGTATTTGTCTT CAATATGGTGGTTTTTGTGCTCAAATTACACCTTTTTGCTGCTTCTGCTATTATTGACCAGCATTTGGCATGCTTACAGT AATTGCTCAAATGAGATAAATTAGGTACTGGGTCAGCATATAAGAAATAGTTGATTCATAAGAAAACGGTTGTTACAGCC AGGTATTCGAGAGATCCTGTTCTTTCCCAGACTAGATTTCCAAAACAAAAGATAGCCTTCTCTAAACTTCTTCCTCCTTA TTTATAGCCTCTCATCTTTAACTATCTGCCTAAACTAACTCTCTAACTTAGGAACTCTTTGAATTACCTTTTCAGAAGAC AATTTATAAAGGGCATGTGAGATCTTTTCAAAAACAACACAAAACTAGGGCTTCTGGAGGAGTTATGCATCCCCATTAAT ACCCTTATAACCTAATTTCCTACACTGGAAAACAATACATTTAAGATTGGCTTACTACTTTGTGTTACTACTAGTGATGT GTGTATGTATGCCTTTGTTTTACCAGCTGCTGGAGCTGGACTTACTGGAACCAAAATGGCTAGGAGAACTGGGGGTGTTG ACGAATTTGAGTTCAAAGCTATAGGTGAAAACCATAACCAAGGCGTAAGTTTTTATTGATTTCCCATTCTGGTGACATTT CTTACTTGATTCAGTTTTGACCTCTGTGCACGTGAGCACATGCATGTGTGAACTTTGTCTAACCTTTATTGTATTACTTA ATACTACTATTGCGTTAGTTTATTGTTTCAAATTGGATTTTGCTCACAGAGGCTTGGGGTTGAGATTTTGGTGTCTGGCT TTGTCTTTGAGGAGGAGGATTTTATAAGGCCATGGGAAGGACAGAATGACAACTTGGAGAGGTACACATCTTTGCCATTT TCCATCTCCTAAAATGGTTCTTTCATTAATCATTTTTTAGAAAAAAAGTAGTTGGTACTGTTAAGATCCCACATCAACTA GGTACATGACCAAAGTACTCCTTGTAATACGTGGTTGAGGCACACAGTCAATTCTTATTTCTAATATGGTGTTGAAACCT ATCCCAGTCGTCATAATTTTAGCACTACAAATTTTATGCTAAAAATATCAATCCTATTCTGTTTTTAGTTCTAATAGATA CAATGGTAAATATTATTGTTGAATACAACTTTTATTAGCTGAGGACATGTCAATACAATATGTCAACATGTTTATGGAAA ATTACCTTATATTGAAATAATGAACTTTCCAACTGTTTTTGCTCATTTGTTAATTGCAATGTTGATGTTCTAATGATTGA TCCCAGCAAAACAAATGACATTTCATATGGCCTTGTCAAAAGTTAGGTATGCACTGCAGTGGGAGTCCAAGCATCTCATT GCCGTGAGCTCTGCAATTCAAGATTGGCTTACTTCAAGTACTTGATTTGGGTTTCATAAGTCTTTTTGATAGTATATTCA AGCAGAGTTGTGTATGATATAGATATTTCTGTGATTTGCACTAGGAATTGCCACAGAGCTGATGAAGCAAGGCGCAATGA TGACTGTCTTGCATGCACTTGTAACTGCATTTGCTTGGCCGGCTGCCTTACTTACAGTCACTGAATTCATAGACAGCTCA TGGACAATGGCTATTGACAGGTTTACTTTTATTTCTTGGTTTTAAGTGGAATAGAACTTTTACATGGTAAAAAGGAATGT CTACTACTTGCTCTTTGTTACTTAATTTAAGGGTTTCAATTGCTTTTGCTGGACAGTATTCAGTGGTGTAATTGGTTGTC GATGGATTATTGAAGGATTTAATAAACTTAAACTCTCGTTCAAGTTAACAACTGTATGAAACTAACTTTAAGCAATTTCA TTTTTTGGGGAACTTTCTTACCATATATCTTATGTGCTATTCCTACCATATAGGTATTTTAAGGCTTCATCGTATCCTAC CTTGTCAAAATGAACTCTTGATTTTTCCTATTTCTTGTTTGTTAAATGCCATGTCCTAGGCAAAACCATGTAGGGGATGA ACTCTGAGACATCATTATTATTTTTTTCGATAGTTTTTATCGTCTCAATGATAAAAAAATTACACAGTTTTCCATCCGTT CTTAGTTTACCATTAATTCTGCTTTTCTAAGTTTATTTTATTATTTAGGTCAGACAAGGCAGGAAAGTTGCTTGCTGAAG TTTTATTGGGAGGACTGCAGGGAAATAGGTATTTGGCTTATTTTGAAGTTTCTTTAAAGTATAAAATAGTGGAATATGCA ATATTTTTAATTTGTGAGTTTCAGACCCGTGACACTTGTAGGTTACTCACTTGGAGCAAGAGTTATTTTCAAGTGTCTTG AGTTTTTGGCTGAAACAGAATGCCACGGTAGGTATTTCCACTTCCATTTTGTTTTGTCTTTGATGTGATGGACTTAATTC ATTTGTTTCCTTGAGATTCTTTAATCTTATTAACCACCTGTCAGAGGGTAACTTCTCCCTCTTAAACTTTTTAACTCTAG TGATTGGTAATAAGATGATACCAGTTATTAATTTTTACGCGCTTCTTCTGTTTGTTGGCAGCTGAACTGGTAGAAAGAGT TGTTCTGCTTGGAGCACCCATTGCAATCAAGGATGAGAATTGGAAGGCTGCTAGAAAGGTGAAAGAGGATTTTATTTTTC TCTTGATAGCACCTTCTCAATCTCACCTGTATGATGGAAATATTGTTTTTATTACTTTTAATGAGATTCTGGTATCCTGT AGATGGTAGCAGGAAGATTTGTGAATGCATATTCAAGGAATGATTGGATGCTTGGAGTTGCTTTCCGTGCCAGGTACATG AAAATGTTGTGTTAGAATTTCTGTGGCTTGTGGATTCTTCAAGTTGATCCATAGGACATCACCTATAGACCAATTAATTC TTGCAAAGATTCACGTCAAAATTAAAGATGAAATGAGATTCACTTCAACATCACCTTAACAGAGCACTAAGCACTAGCAC TCTTCAGAATGATTACTTGTACCTTTTTAGTAGATTGTAAGTAAAAACTAATCTACATGCTGTGTGCAGTCTACTTACTC AAGGATTAGCTGGAATCCAGCCAATTGATATTCCTGGGATCCAAAATGTATGTGTTTTCTTCATAATCTTGGATCCACAA CTGTTTCTGCTTGTTACTTTTTTGTTCCGGTTATAAGTTGTTGCTATTATCTAGAACTTGTATAATAAGTGCTAGCATTC ATAATTCATTGAATTTGATTTTTAGCTAAAATGGTTCATTGGTTTTGCAGGTTGATGTAACAGGTCACATTGAAGGCCAC TCCTCTTATTTGTGGGCTACACAAAAGATCTTAGATGAACTTGAAATGGATACATATTATCCCGTTTATAACAGTATTCT TGTCATACAGTAAACCCTCCAACTTCTTCATTGTTTAATTATTATGAAGAACGTTCTAGTGTCTGTGTCACTGTCTATCA AGTGGATCGAGGTTCCCTCAATTTTCCAAAGAAATTTACAGTGATTTAGATTTTCGTTCATCAGAATCCTTGGATTGAAT TAATGCCTTGTATATGATAGCATCCAGCCACATCCGCCTCTTCTTCGGTTATACAGACTTTCCATCATCTGTTTTCCCTT CTTAGTCTTTTTAGTTTTATTCTGATTATTACATGTACGAATGTAAAGTGTAACAAAAAAAAAACTCTTTGCCTTCCTGT TGTAACAAAAAAAAAACTCTTTGGTACTTATTAGACTTAATTGCA
CDS sequence (LotjaGi2g1v0384200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCGGCGACGTCGTATCTGACGCCGACGCAGCGCTACGCTGCCGGAGCATTGTTCAGCCTGTCTCTGCACCAAGC CCACCTTCACCAAACCCACCCGCTTGGCCTTTCAACCCACGATGAATTCCCTTCTCCCTCCACATCTTCTTCTACTCCCT TTTCCGTTTCCGAGGATCCCAACCTCTGGGTCCACCGCACTTCCGGTTTGCTCCGCCCTGTTTTCATGTTTCTGGAAATT GAACCTGGAGCATGGTCTGGACTTGAGGAAACTGCTGGCTCTACTTCAGCTTCCCGTCACGTTGGACCGTACTTGAGACT ATTATCAGAAGAATTTGATATTGATGAAGATGGTGATTGTCAAAGGGCAGATCAAGAACTTGCTTTGTCAGAAGCTGTTG ATGCTATGGTGCTTAGCCTGGAAAAAAATGCACAGGCTTCCAGGGCGAAACGAGAGAAGTTTCGCGAATATGAGAATCAA TGTCGTGAAAAGGTTTCGACTGCTGATGTTCAATCAGACTCTGAGGAGGTAGACATTCATTTGGAAATTCAGAAGGAGAC CGATAGCCCTTTGACTCCTTTCTTTGAATGTGAAGACGTACACGAGGGATCTGTTAATCATGACATTGATGAGAGTCCAA TTGAGGAGGTGATGAAGCTCAGCTATCAGAGGAAAGTGGCAGTTCTATATCAACTTCTTTCTGCTTGTCTTTCGGACTTA GGTGAAAAAAACGTTAAATATAATCGGAGAATAAAAGGCTATGATGCTCGACATCGTGTGGCTCTACGGTTGCTGGCAAC TTGGCTTGATATCAAGTGGGAAAAAATGGAGGCCATTGAGACTATACTAGCTAGTTCTGCAATGGCTTTCATTAAAGAGC AAGAATCAAATAAAGATGAAACTGAATCAAAAGAAAGCAAGTGGGCTAAATGGAAGCGAGGTGGCATTATTGGTGCTGCA GCGTTAACTGGGGGAACCTTGATGGCTATTACCGGTGGATTAGCTGCCCCAGCAATTGCTGCAGGACTTGGTGCTTTGGC TCCAACGTTGGGTACTTTGATCCCTGTAATTGGAGCAAGTGGATTTGCAGCAGCTGCTAGTGCTGCAGGAACTGTTGCTG GTTCTGTTGCTGTTGCTGCCTCCTTTGGAGCTGCTGGAGCTGGACTTACTGGAACCAAAATGGCTAGGAGAACTGGGGGT GTTGACGAATTTGAGTTCAAAGCTATAGGTGAAAACCATAACCAAGGCAGGCTTGGGGTTGAGATTTTGGTGTCTGGCTT TGTCTTTGAGGAGGAGGATTTTATAAGGCCATGGGAAGGACAGAATGACAACTTGGAGAGGTATGCACTGCAGTGGGAGT CCAAGCATCTCATTGCCGTGAGCTCTGCAATTCAAGATTGGCTTACTTCAAGAATTGCCACAGAGCTGATGAAGCAAGGC GCAATGATGACTGTCTTGCATGCACTTGTAACTGCATTTGCTTGGCCGGCTGCCTTACTTACAGTCACTGAATTCATAGA CAGCTCATGGACAATGGCTATTGACAGGTCAGACAAGGCAGGAAAGTTGCTTGCTGAAGTTTTATTGGGAGGACTGCAGG GAAATAGACCCGTGACACTTGTAGGTTACTCACTTGGAGCAAGAGTTATTTTCAAGTGTCTTGAGTTTTTGGCTGAAACA GAATGCCACGCTGAACTGGTAGAAAGAGTTGTTCTGCTTGGAGCACCCATTGCAATCAAGGATGAGAATTGGAAGGCTGC TAGAAAGATGGTAGCAGGAAGATTTGTGAATGCATATTCAAGGAATGATTGGATGCTTGGAGTTGCTTTCCGTGCCAGTC TACTTACTCAAGGATTAGCTGGAATCCAGCCAATTGATATTCCTGGGATCCAAAATGTTGATGTAACAGGTCACATTGAA GGCCACTCCTCTTATTTGTGGGCTACACAAAAGATCTTAGATGAACTTGAAATGGATACATATTATCCCGTTTATAACAG TATTCTTGTCATACAGTAA
Protein sequence (LotjaGi2g1v0384200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMAATSYLTPTQRYAAGALFSLSLHQAHLHQTHPLGLSTHDEFPSPSTSSSTPFSVSEDPNLWVHRTSGLLRPVFMFLEI EPGAWSGLEETAGSTSASRHVGPYLRLLSEEFDIDEDGDCQRADQELALSEAVDAMVLSLEKNAQASRAKREKFREYENQ CREKVSTADVQSDSEEVDIHLEIQKETDSPLTPFFECEDVHEGSVNHDIDESPIEEVMKLSYQRKVAVLYQLLSACLSDL GEKNVKYNRRIKGYDARHRVALRLLATWLDIKWEKMEAIETILASSAMAFIKEQESNKDETESKESKWAKWKRGGIIGAA ALTGGTLMAITGGLAAPAIAAGLGALAPTLGTLIPVIGASGFAAAASAAGTVAGSVAVAASFGAAGAGLTGTKMARRTGG VDEFEFKAIGENHNQGRLGVEILVSGFVFEEEDFIRPWEGQNDNLERYALQWESKHLIAVSSAIQDWLTSRIATELMKQG AMMTVLHALVTAFAWPAALLTVTEFIDSSWTMAIDRSDKAGKLLAEVLLGGLQGNRPVTLVGYSLGARVIFKCLEFLAET ECHAELVERVVLLGAPIAIKDENWKAARKMVAGRFVNAYSRNDWMLGVAFRASLLTQGLAGIQPIDIPGIQNVDVTGHIE GHSSYLWATQKILDELEMDTYYPVYNSILVIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 315 | 315 | - | – | |
| PANTHER | 5 | 666 | 662 | 0.0 | ||
| PANTHER | 5 | 666 | 662 | 0.0 | – | |
| MobiDBLite | 35 | 58 | 24 | - | – | |
| MobiDBLite | 41 | 58 | 18 | - | – | |
| Pfam | 310 | 658 | 349 | 8.6E-98 | ||
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 316 | 341 | 26 | - | – | |
| Phobius | 342 | 360 | 19 | - | – | |
| TMHMM | 343 | 365 | 23 | - | – | |
| Phobius | 361 | 387 | 27 | - | – | |
| TMHMM | 369 | 391 | 23 | - | – | |
| Phobius | 388 | 480 | 93 | - | – | |
| Phobius | 481 | 502 | 22 | - | – | |
| TMHMM | 484 | 506 | 23 | - | – | |
| Phobius | 503 | 672 | 170 | - | – | |
| Gene3D | 503 | 624 | 122 | 3.1E-7 | ||
| SUPERFAMILY | 534 | 617 | 84 | 1.8E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0384200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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