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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0416200 |
Transcript ID | LotjaGi2g1v0416200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tobamovirus multiplication protein 2A; TAIR: AT1G32400.1 tobamovirus multiplication 2A; Swiss-Prot: sp|Q9C5W7|TOM2A_ARATH Tobamovirus multiplication protein 2A; TrEMBL-Plants: tr|A0A1J7FXI4|A0A1J7FXI4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91393686..91397949) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTGTAGGGGGTTTTGGGAGTGCCTTTTGAAGCTTTTTAACTTCATAATGACCTTGATTGGTCTCACCATGGTGGG ATATGGGATCTATCTGCTGGTTGAATTCATCAAAGCTTCAGGTAGTGATGATGACACACCGGCGGTTTCTCCGGCTAGCG ATGATCAAGCCCTAATTCAACTTGGTCGACCGATGCTTTTGGCGGTGTCTCTATCTGAGAGCATTTTTGATAAGTTGCCC AAGGCTTGGTATGCTCACTGCACCTTTCATATTGTTGCACATTCATATTGTTAATTTTGGATGAAGTGATAAAATCCAAT TTATATTGTTTTTGTACTGTCTAATCCTAATTGCATGTTTCATATCTGGCAGGTTTATTTACTTATTTATTGGTATTGGA GTAGTTCTCTTTGTTATTTCTTGTTTTGGTTGTATTGGAGCGGGGATGCGGAATGGATGCTGCTTGTGCTGTGTATCCTT ATAGAATGAATGTCTTATGCTATGCTATGACTAAAAGTATTTCATGGTCTCATAAATTTCCACTAACTTTCACTTGAGAC TGAGATCTGATATTTGATGTGTATTTTCATAAATGGAATATACAGTATTTATATACATGTTTAACTAGTCAATCCCTTAA GTTTTGGGATTACAATATTAGCTAAATAGGGAAACATTGGAGACTTTGATAATGTGATGCACAGCAAAATATGCAGAATC TGCACCCAATCACTTTAATAGAACAGAATAATATCTCAACACTCCCCTTTAAGCTAAAGCGTATAGATATGCGTCCAACT TAGATAGAACATATGTATGAGATATCCTCAGACCTGTAAAGACTTAGTGAAGATATCAGCAAGCAAATTCTTGGAGAAAA CAAAAGAAGTTTGATTATGCCAAAAAATTATGTTCTATGATGGAATGACAATAGAATTCTACATGCTTTGCTCTCTTATG AAATACTGGATTGAGGGAAAGGTGCTAAGTGACTAGTTATCACACATGAACTCTCTGAGACCAATCTTGCAGTAATGTAA TTGTTGTAGTAATTGCTTAAACCACAGGGGCTCACAAGTTGTGTGAACCACAGCCCAATACTTAACTTTTGTACTTGACC AGACAAAAACACTTTGCCATTTACTCTTTCATGACATAAGATTTTCACCCATTCAAACAAAATAACCCAAATTGAACCAT CTATGGTATCACTTGCCCAATCGGCATTTGAGGATCCAACTATCTCTGTGTGACCTTGGTATGTGCCTTTCTTGGCAACC CGTTGATGTAGGATTTGAATACTGCTTGCCAATGACTATCACAAGGGGAATTGAGGAATGGACTTATAATACTGATCGAA AAAGATATATAAGTCGAGTCATTGTGAGATAATTTAATTTTCTCATTAATCTTTGATATCTTCTTGTGTCAGGATAGGGC TGCCCTCATTGGGCTTAAGCTTCATATCAGGGTCCATGGGGGTGTCATCTGGCCTGCATTCTTGACGACCTATCTTCTCA AACATGTCAAGAGCATACTTCCTCTATGAACAACTCTGCTTGACTTTGACTGCACCCCCTCAATCTTAAGAAAATAATGC AAAGGGCACAAGTCCTTAGTCTAAAAGTGATGAAAGAAGTGTTTTTTAAAGACTTTTATACCCTCTTGATCATCACCACT CCAGTGATCACAGTTTCATCCACTTAAGTTTCTAGATATATTTATTTGATGATGAGCATTTAAAGAAAACAATGAATATA TTAACACAATAATATCTTAACAGATACGAAGTATGAGTTGAAGCTTATCTTCCACTTTCCTGTTGTTTGTAGCAGTATGT GTGTGCATATATACATGCATTAATCTGTCATAGTCTTAATGGTAATATTATGAGTTTCCTTAAGTCAACAAAGTATTCGA TTCTTGTGGCGTTGTTGATCTTAGTCGAGCTGGGATGTGCAGCCTTTATATTCTTTGACAAAAGCTGGAAAGAAGTAAGT AAAATTGTTTATGGTAATTTATGATCTGAAATTAAATAAGATATATTGCCATCTTACATTTATATATATAATTTTTTTGT TTTCAGGTAGTTCCATCAGACAAAACTGGAGATTTTGATACGATATATGAATTTCTGAGAGAGAATTGGAATATTGTGAA ATGGGTTGCTCTTGGGATTGTTGTCTTTGAGGTAAAAAAAAAGTTGTATGATTGGCTTTTAAAAGAAAGCAAATTTGTTT TGCAGACTCGCGTGTATCCTTGTGCATGTACCCACTGCAGGTCCTAAGATTATCATTGGGCCAGTAAAAGATTGTTTGAG CTTTTGATAAGAAGATTACACTGGTTTTCTTCGCTGAGAGATACATCTGAGAGACTAGCAAGACAAGGGAAATAAATTGA TTCATCATCTTGTTAATCTCATGAGTCACTCATCAGTCATCAACGACAACGATGATAGGATTTTAGTCCCCCCACCCTGG ATTTAAGCAATAGCTCCAGCCCAGGAGCCAACTTTTTCAATGATATTTCTTTTTTGATGACTGATTAGAAAGTGTTATAG GGATATACACGGCGAGTCGTGGACCTTATTTATTGTACGAAATAACAGTTCTGATATTAATAGGTGTCAAGGAATATAAA GAAAAAGCTGGAAGAGACGAAGGAAGAGGGAGTAGTAAAGAGAGAAGTTTAAAAATTGCTAATTCAGCAATAAGCTACTA TGAAATTCAGGAATTTTGGAAACAAATTAATGCCCTATAAGAAGCCTCGCCTTATCTGTTGGTATAATATAATATTCCGC TAATTCTGAAATGTACTTAGAGTACTGTATTGAAATGTCTTCACCTAACTTGCTCACCTACCACTAGAAGGAGAATGCTT TAAAAATGTAGCGATGTAATGTAACATGCCCATTGTTATGTTTGTTGAACATAAAATTTGGTGAATTCTTATCATATATT GTTATGTTTGCAGGTCCTTCTTTTCTTGTTAGCCCTTATTGTTAGGGCCTCAAATAGACCAGCAGATTATGATAGTGATG AAGAGTTCATCAATCCAAGGCAGCAAGCTCGGCAGCCATTGCTCAACCGACCAGCAGGTCCAGCAACAGGCCCCCCAGCT TCTGGGACACTTGATCAGCGCCCAAGCAGAAATGATGCATGGAGTACAAGGATGAGGGAGAAGGTTTAAACTTGTTTTCT TCAGTTAACTTTGTCTTATTTTTGTGATGCAATTTTTTTTACGCTTTGTCTGAACTTTTATGTGTGCCAATTGAAACATT TTGAAAACCAAATGAACTGCAAAATAAATGCTTTTGGGGCTGTGAAAGTAGCTCTATCGTTCGTGCTCCTCACCTGAGGA TCACTCGCTTGATTAGCTCATTTCCCTCCGCGGGTTTTCCCTGCAGGGCAGAGACACACGAGAGTACTTGAGGATTGCAC TACCATACTTGTGTGTTGATGTGCTCGAGCCCTCATAGCCTTATGGTTTACTAGGCATTTTCCCCTACAAATATGTGTGT GTATGGCTTTGACGTTTTCCTTCCTAAGTTAAAGTTCTGTCTTTTTCCTGTCATATTTGATCGCCGTTGAGTGCCAAGAA AAGGATGATCTTTATGCAGTCGTCTAGTTTTTTACCACTGTCCCAACCATCCATCCACATATGTGTATGTGTGTGTGTGT CTGGACTCTGGGTCTCTTTCTGTGTGTAATAGTAGTTTCTTTCGGTCTAAGTTTGTTGTGCATTTTAATTTTTATTGAGT TTCCTGATATAACCACAAAAGCCCTTTTACATTTGGTAGAGTTAGCTACATGAATCAAATGACACCACAATTTCCTATCA TGAATCACTGTAATCAAGTGTTTTTTTGATGAAGTTACATTTTTTAAGAACATTGCATTATTGAAATAGCATTGTTCAAA TAATTTTGTGGGAGATTTTATGAAGTTTTCAATCAAGATTGTTACATTGACTTCATGTCTCAAGTGAATGGCCAAACCTG AATTATATCTAATGTTTTCCCGATCGCAAAGCAGGATATCCTTTTCACTTAAAACACTTTTTATTGGTTTTGTTAGTTGT AGCTTTTGTTGTTACTGTTGTATTATGTGTGGTTTGTTTTACTGTCTAACACTATACTGCATTTCTGCTTATTCAGTATG GGCTTGATACTTCAGAATTTACATACAACCCATCCGAGTCACAAAGGTTCCAGCAAGTAAATGCACCTCCAACTGAAGAA AGGAGTCGCTGTACCATCATGTAA
CDS sequence (LotjaGi2g1v0416200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTGTAGGGGGTTTTGGGAGTGCCTTTTGAAGCTTTTTAACTTCATAATGACCTTGATTGGTCTCACCATGGTGGG ATATGGGATCTATCTGCTGGTTGAATTCATCAAAGCTTCAGGTAGTGATGATGACACACCGGCGGTTTCTCCGGCTAGCG ATGATCAAGCCCTAATTCAACTTGGTCGACCGATGCTTTTGGCGGTGTCTCTATCTGAGAGCATTTTTGATAAGTTGCCC AAGGCTTGGTTTATTTACTTATTTATTGGTATTGGAGTAGTTCTCTTTGTTATTTCTTGTTTTGGTTGTATTGGAGCGGG GATGCGGAATGGATGCTGCTTGTGCTGTTATTCGATTCTTGTGGCGTTGTTGATCTTAGTCGAGCTGGGATGTGCAGCCT TTATATTCTTTGACAAAAGCTGGAAAGAAGTAGTTCCATCAGACAAAACTGGAGATTTTGATACGATATATGAATTTCTG AGAGAGAATTGGAATATTGTGAAATGGGTTGCTCTTGGGATTGTTGTCTTTGAGGTCCTTCTTTTCTTGTTAGCCCTTAT TGTTAGGGCCTCAAATAGACCAGCAGATTATGATAGTGATGAAGAGTTCATCAATCCAAGGCAGCAAGCTCGGCAGCCAT TGCTCAACCGACCAGCAGGTCCAGCAACAGGCCCCCCAGCTTCTGGGACACTTGATCAGCGCCCAAGCAGAAATGATGCA TGGAGTACAAGGATGAGGGAGAAGTATGGGCTTGATACTTCAGAATTTACATACAACCCATCCGAGTCACAAAGGTTCCA GCAAGTAAATGCACCTCCAACTGAAGAAAGGAGTCGCTGTACCATCATGTAA
Protein sequence (LotjaGi2g1v0416200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MACRGFWECLLKLFNFIMTLIGLTMVGYGIYLLVEFIKASGSDDDTPAVSPASDDQALIQLGRPMLLAVSLSESIFDKLP KAWFIYLFIGIGVVLFVISCFGCIGAGMRNGCCLCCYSILVALLILVELGCAAFIFFDKSWKEVVPSDKTGDFDTIYEFL RENWNIVKWVALGIVVFEVLLFLLALIVRASNRPADYDSDEEFINPRQQARQPLLNRPAGPATGPPASGTLDQRPSRNDA WSTRMREKYGLDTSEFTYNPSESQRFQQVNAPPTEERSRCTIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
PANTHER | 2 | 283 | 282 | 3.6E-141 | – | |
PANTHER | 2 | 283 | 282 | 3.6E-141 | – | |
Pfam | 9 | 141 | 133 | 1.1E-13 | ||
PRINTS | 9 | 32 | 24 | 1.7E-5 | ||
Phobius | 12 | 34 | 23 | - | – | |
TMHMM | 13 | 35 | 23 | - | – | |
Phobius | 35 | 82 | 48 | - | – | |
Phobius | 83 | 107 | 25 | - | – | |
TMHMM | 85 | 107 | 23 | - | – | |
Phobius | 108 | 113 | 6 | - | – | |
TMHMM | 114 | 136 | 23 | - | – | |
Phobius | 114 | 137 | 24 | - | – | |
Phobius | 138 | 165 | 28 | - | – | |
TMHMM | 166 | 188 | 23 | - | – | |
Phobius | 166 | 188 | 23 | - | – | |
PRINTS | 166 | 192 | 27 | 1.7E-5 | ||
Phobius | 189 | 283 | 95 | - | – | |
MobiDBLite | 214 | 239 | 26 | - | – | |
MobiDBLite | 255 | 283 | 29 | - | – | |
MobiDBLite | 255 | 275 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0416200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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