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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0440900 |
Transcript ID | LotjaGi2g1v0440900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphatase 2C family protein; TAIR: AT2G29380.1 highly ABA-induced PP2C protein 3; Swiss-Prot: sp|Q5SN75|P2C08_ORYSJ Probable protein phosphatase 2C 8; TrEMBL-Plants: tr|A0A0S3T614|A0A0S3T614_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0440900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93737030..93739301) extracted from Lotus japonicus Gifu genome v1.2.
GCAACAACAAACTTCATTACTTCTCACATGAGGATTGAAATTGAACACACAACTTTTTTGTCCTTACTAAGTCAGTCAAT AACATGTTGGTGAATGACTTAAAGTGATGTGTGAAAGACAACAAAAATCGATGAAGTGGAGGGCGTCAGGCAGGCGTGAA CGCCTGACGTATCTTTTAACAAAGTTTCCCAGGCCACGCCTTCCCCTCCTGAATCCAGTATTTTCCGGATAGGCTGCCAC GTATTGAAATCACAAACCAGAGCTCTCCACGTTTTCCTCATATAAATCCAAAATGGAAACAGAGCTGTACGCTTCAGATT TAACTCTTCAACATCGGGGACTACCCTGCTTCGTGTCATCGTCTCACGTATACAAAACCAAAGTTAGACACAAAGACTTT CCTCTTCAAACAGGAAACAATAACTCATCAAAGAAAATACAAAGCAAAAGACATTGAAGCTGAACAGAGCGTGCTGTATG GTATGGTGAAGGAAGCCATAACAATATGTTGTGAAAAAGCTGATCGTGTAACACAAAACTACTGTATACGAATAGTATAC CATGGAGGAGGGTGATACTGATCATATTATTACTACTACTACCAAAACCAAAACCAAAGAAATTGAACGACGCTTCAATA ATTACAGAAGGAAGAGAAAGCGACCTTGTAAGGTCGCTTCAATCCCCACAAGCGTCCAACACAAGTTCACCGACAACAAA AACACCGCCACCGCATCACATGGTTTCATTTCCGTGATCGGCCGCCGGAGAGCGATGGAGGACGCTGTCAGGGTGGTTCC TCGTTTCGTCACGGCCGAGCACAGCCCGTCGGGATATGATTTCTTTGCTGTTTACGATGGTCATGGAGGGACGGTGGTGG CCAACGCTTGCCGTGAGAGGATGCACTTGTTGCTGGCGGAGGAGGTGAAGCAGGGGTTGGCGAGCGGGGATCAGGGGTTT GATTGGTTCAGAGCCATGTATTCGTGTTTCATGAGGATGGACAACGAGATCGGTGGTGGTGGAGGGGATGATGACGTGAC CGTGGGTGAAGGGAACACGGCGGGTTCTACGGCAGCGGTGGTGGTTGTCGGGAAGGAGGAGATCGTGGTGGCGAATTGTG GGGACTCAAGGGCGGTGTTGTGCCGTGGCGGTTTAGCTATTCAACTTTCACGTGATCACAAGGTGAGATGAGAGTCACAT TTTATTTACTACTAAAGAAAGGGTCTTAAAAAAAAAGACTCTAGTTAAAGTTTGAGTTATCCTAATTCGTAGAAATGAAC CAATAATCTAATAATTGTTCAATTTATTTCAAATATCATTGATTCACCTAAAATTATGATGATTTAACTCAAACTTTTGC TTAGGGTTATTTAGACAATTCGTATAACGGGGTTTGTTTGTTGTTTGCTTGATTGAATCAGCCTGATCTTCCGGATGAAA AAGAGAGGATTGAAGCGGCAGGGGGAAGAGTGATTGGTTGGAACGGGAATCGCGTTTTAGGAGTACTTGCAACTTCCAGA TCCATAGGTAAATGCCTCACTTCAAGCTTTATGTACGTAATTATATTGCATGGTGTTTGTGTAAATACTTAAGTGACAAT AATGTAAACTGTGAAGCAAGCAATACTTGAAAGATCAAAACTGGAAATGTATGCTGATGCAGGTGATCACTGCATGAAAC CTTTTGTGATATCAAAACCAGAGATCAATGTGGACGCAAGAACAGAGTTAGATGAGTTTCTAGTGGTGGCGACTGACGGT CTATGGGATGTAGTGACCAACGAGTATGTATGTGAAGTGGTAAGAAGTTGCCTAAGAGGGCAAATGAGGAGGAATATGAT AAAACATGAATCAACTAGAAGTGATCATGCAGCAGAGGCGGCAACGTTGTTGGCGGAGTTGGCAATGGCTAGGGGAAGCA AAGACAACATCAGTATCATAGTTATACAGCTCCAGAGCCATTAATTCAACCGCCTAGTTTTATTTATTTACATTTCCTCC TACTGTTTAATCTGATTCTCTCTTTTAATTTTTCACCTCTAATTTCTCTATCGACCCAAGCCAAGCTGTCTTTTGTTAAA ATTTACTAATTTATATTAGGCTCTCTTCAGAGTTTTAAAAGAAAGGAACACACTTAAATTGAAAAATGTTGGGTTGACAT TTCATTTTCACCTTCAACTTAGATAAATAATAAGGGAAAAGAGAGAAATGAGTAATATTTGTTATATGATTAGAAATGCA GTGAAATATGAACAAAAATGCAAAGTGGAAAA
CDS sequence (LotjaGi2g1v0440900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGGTGATACTGATCATATTATTACTACTACTACCAAAACCAAAACCAAAGAAATTGAACGACGCTTCAATAA TTACAGAAGGAAGAGAAAGCGACCTTGTAAGGTCGCTTCAATCCCCACAAGCGTCCAACACAAGTTCACCGACAACAAAA ACACCGCCACCGCATCACATGGTTTCATTTCCGTGATCGGCCGCCGGAGAGCGATGGAGGACGCTGTCAGGGTGGTTCCT CGTTTCGTCACGGCCGAGCACAGCCCGTCGGGATATGATTTCTTTGCTGTTTACGATGGTCATGGAGGGACGGTGGTGGC CAACGCTTGCCGTGAGAGGATGCACTTGTTGCTGGCGGAGGAGGTGAAGCAGGGGTTGGCGAGCGGGGATCAGGGGTTTG ATTGGTTCAGAGCCATGTATTCGTGTTTCATGAGGATGGACAACGAGATCGGTGGTGGTGGAGGGGATGATGACGTGACC GTGGGTGAAGGGAACACGGCGGGTTCTACGGCAGCGGTGGTGGTTGTCGGGAAGGAGGAGATCGTGGTGGCGAATTGTGG GGACTCAAGGGCGGTGTTGTGCCGTGGCGGTTTAGCTATTCAACTTTCACGTGATCACAAGCCTGATCTTCCGGATGAAA AAGAGAGGATTGAAGCGGCAGGGGGAAGAGTGATTGGTTGGAACGGGAATCGCGTTTTAGGAGTACTTGCAACTTCCAGA TCCATAGGTGATCACTGCATGAAACCTTTTGTGATATCAAAACCAGAGATCAATGTGGACGCAAGAACAGAGTTAGATGA GTTTCTAGTGGTGGCGACTGACGGTCTATGGGATGTAGTGACCAACGAGTATGTATGTGAAGTGGTAAGAAGTTGCCTAA GAGGGCAAATGAGGAGGAATATGATAAAACATGAATCAACTAGAAGTGATCATGCAGCAGAGGCGGCAACGTTGTTGGCG GAGTTGGCAATGGCTAGGGGAAGCAAAGACAACATCAGTATCATAGTTATACAGCTCCAGAGCCATTAA
Protein sequence (LotjaGi2g1v0440900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEGDTDHIITTTTKTKTKEIERRFNNYRRKRKRPCKVASIPTSVQHKFTDNKNTATASHGFISVIGRRRAMEDAVRVVP RFVTAEHSPSGYDFFAVYDGHGGTVVANACRERMHLLLAEEVKQGLASGDQGFDWFRAMYSCFMRMDNEIGGGGGDDDVT VGEGNTAGSTAAVVVVGKEEIVVANCGDSRAVLCRGGLAIQLSRDHKPDLPDEKERIEAAGGRVIGWNGNRVLGVLATSR SIGDHCMKPFVISKPEINVDARTELDEFLVVATDGLWDVVTNEYVCEVVRSCLRGQMRRNMIKHESTRSDHAAEAATLLA ELAMARGSKDNISIIVIQLQSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 26 | 339 | 314 | 8.7E-122 | – | |
PANTHER | 26 | 339 | 314 | 8.7E-122 | ||
SUPERFAMILY | 43 | 340 | 298 | 2.75E-74 | ||
Gene3D | 47 | 342 | 296 | 2.7E-93 | ||
SMART | 48 | 337 | 290 | 6.0E-87 | ||
CDD | 59 | 339 | 281 | 2.07353E-81 | ||
ProSiteProfiles | 59 | 339 | 281 | 52.805 | ||
Pfam | 60 | 332 | 273 | 1.4E-61 | ||
SMART | 74 | 339 | 266 | 0.0083 | ||
ProSitePatterns | 94 | 102 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi2g1v0440900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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