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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000222
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 148 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.466s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0086639.1
n.a. PREDICTED: probable protein phosphatase 2C 25-like [Glycine max] gi|356569519|ref|XP_003552947.1| chr0 34995953 34998021 -
2 domain predictions
1 GO term
Lj0g3v0123379.1
n.a. PREDICTED: probable protein phosphatase 2C 76-like isoform X1 [Cicer arietinum] gi|502136263|ref|XP_004502624.1| chr0 55348290 55354582 -
2 domain predictions
1 GO term
Lj0g3v0209759.1
n.a. PREDICTED: protein phosphatase 2C 16-like [Glycine max] gi|356563938|ref|XP_003550214.1| chr0 105234861 105236957 -
2 domain predictions
1 GO term
Lj0g3v0209759.2
n.a. PREDICTED: protein phosphatase 2C 16-like isoform X1 [Cicer arietinum] gi|502125207|ref|XP_004498842.1| chr0 105234861 105236979 -
2 domain predictions
1 GO term
Lj0g3v0286019.1
n.a. PREDICTED: protein phosphatase 2C 37-like [Cicer arietinum] gi|502137755|ref|XP_004503174.1| chr0 148543842 148545799 -
2 domain predictions
1 GO term
Lj0g3v0302609.1
n.a. PREDICTED: probable protein phosphatase 2C 60-like isoform X1 [Cicer arietinum] gi|502106250|ref|XP_004492898.1| chr0 157427994 157437583 +
2 domain predictions
1 GO term
Lj0g3v0341549.1
n.a. PREDICTED: probable protein phosphatase 2C 39-like [Cicer arietinum] gi|502088118|ref|XP_004488738.1| chr0 179003173 179006276 -
2 domain predictions
1 GO term
Lj0g3v0351549.1
n.a. PREDICTED: protein phosphatase 2C 37-like [Cicer arietinum] gi|502097062|ref|XP_004490902.1| chr0 184850052 184851837 +
2 domain predictions
1 GO term
Lj1g3v0052630.1
n.a. kinase-associated protein phosphatase [Lotus japonicus] gi|169409938|gb|ACA57835.1| chr1 600045 606408 +
2 domain predictions
1 GO term
Lj1g3v0052640.1
n.a. kinase-associated protein phosphatase [Lotus japonicus] gi|169409938|gb|ACA57835.1| chr1 600249 606636 +
2 domain predictions
1 GO term
Lj1g3v0715590.1
n.a. PREDICTED: probable protein phosphatase 2C 60-like [Glycine max] gi|356502653|ref|XP_003520132.1| chr1 9406230 9414488 +
2 domain predictions
1 GO term
Lj1g3v0948720.1
n.a. nodule-enhanced protein phosphatase type 2C [Lotus japonicus] gi|4336434|gb|AAD17804.1| chr1 11986701 11989386 -
2 domain predictions
1 GO term
Lj1g3v0948730.1
n.a. n.a. chr1 11986705 11990139 -
2 domain predictions
1 GO term
Lj1g3v0987690.1
n.a. PREDICTED: protein phosphatase 2C 57-like [Glycine max] gi|356516081|ref|XP_003526725.1| chr1 12630695 12635200 +
2 domain predictions
1 GO term
Lj1g3v1787570.1
n.a. PREDICTED: protein phosphatase 2C 16-like [Glycine max] gi|356514681|ref|XP_003526032.1| chr1 21189412 21193392 +
2 domain predictions
1 GO term
Lj1g3v1810050.1
n.a. PREDICTED: probable protein phosphatase 2C 59-like [Glycine max] gi|356507156|ref|XP_003522336.1| chr1 21862726 21866841 -
2 domain predictions
1 GO term
Lj1g3v1812220.1
n.a. PREDICTED: probable protein phosphatase 2C 60-like [Glycine max] gi|356514901|ref|XP_003526140.1| chr1 21946070 21951675 +
2 domain predictions
1 GO term
Lj1g3v4578770.1
n.a. PREDICTED: probable protein phosphatase 2C 38-like isoform X1 [Cicer arietinum] gi|502110964|ref|XP_004493923.1| chr1 54296406 54299650 +
2 domain predictions
1 GO term
Lj2g3v0835890.1
n.a. PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein-like [Glycine max] gi|356495224|ref|XP_003516479.1| chr2 13002709 13012942 -
2 domain predictions
1 GO term
Lj2g3v1589630.1
n.a. PREDICTED: probable protein phosphatase 2C 47-like [Glycine max] gi|356495303|ref|XP_003516518.1| chr2 25275890 25279922 +
2 domain predictions
1 GO term
Lj2g3v1932950.1
n.a. PREDICTED: probable protein phosphatase 2C 63-like [Glycine max] gi|356540647|ref|XP_003538798.1| chr2 28456173 28458741 -
2 domain predictions
1 GO term
Lj2g3v2292680.1
n.a. Protein phosphatase 2C [Medicago truncatula] gi|357490877|ref|XP_003615726.1| chr2 33364133 33366255 +
2 domain predictions
1 GO term
Lj3g3v0420600.1
n.a. PREDICTED: protein phosphatase 2C 16-like [Glycine max] gi|356514681|ref|XP_003526032.1| chr3 3605755 3610205 -
2 domain predictions
1 GO term
Lj3g3v2063820.1
n.a. PREDICTED: probable protein phosphatase 2C 60-like isoform 1 [Glycine max] gi|356523193|ref|XP_003530226.1| chr3 26562265 26569438 +
2 domain predictions
1 GO term
Lj4g3v0286220.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 28-like [Cicer arietinum] gi|502142364|ref|XP_004504921.1| chr4 3484774 3486393 -
2 domain predictions
1 GO term
Lj4g3v1971920.1
n.a. PREDICTED: probable protein phosphatase 2C 27-like [Cicer arietinum] gi|502151361|ref|XP_004508403.1| chr4 27381630 27385290 +
2 domain predictions
1 GO term
Lj4g3v2172980.1
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502150464|ref|XP_004507966.1| chr4 30014309 30017859 +
2 domain predictions
1 GO term
Lj4g3v2172980.2
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502150464|ref|XP_004507966.1| chr4 30015396 30017859 +
2 domain predictions
1 GO term
Lj4g3v2172980.3
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502150464|ref|XP_004507966.1| chr4 30015430 30017147 +
2 domain predictions
1 GO term
Lj4g3v2251410.1
n.a. PREDICTED: probable protein phosphatase 2C 13-like [Cicer arietinum] gi|502150748|ref|XP_004508104.1| chr4 31171737 31173949 +
2 domain predictions
1 GO term
Lj4g3v2265160.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr4 31491064 31495674 +
2 domain predictions
1 GO term
Lj4g3v2265170.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr4 31491210 31494389 +
2 domain predictions
1 GO term
Lj4g3v3044980.2
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502138645|ref|XP_004503481.1| chr4 40687455 40692320 -
2 domain predictions
1 GO term
Lj5g3v0473720.2
n.a. PREDICTED: probable protein phosphatase 2C 59-like [Glycine max] gi|356552431|ref|XP_003544571.1| chr5 4778949 4784645 -
2 domain predictions
1 GO term
Lj5g3v0510720.1
n.a. Protein phosphatase [Medicago truncatula] gi|357437191|ref|XP_003588871.1| chr5 5240726 5248807 -
2 domain predictions
1 GO term
Lj5g3v0615580.1
n.a. PREDICTED: probable protein phosphatase 2C 38-like [Glycine max] gi|356548190|ref|XP_003542486.1| chr5 7785671 7788942 +
2 domain predictions
1 GO term
Lj5g3v0921300.1
n.a. PREDICTED: probable protein phosphatase 2C 43-like [Glycine max] gi|356530695|ref|XP_003533916.1| chr5 13783563 13787577 +
2 domain predictions
1 GO term
Lj5g3v1550020.1
n.a. PREDICTED: probable protein phosphatase 2C 49-like [Cicer arietinum] gi|502117614|ref|XP_004495879.1| chr5 22755271 22757734 -
2 domain predictions
1 GO term
Lj5g3v2111960.1
n.a. PREDICTED: probable protein phosphatase 2C 63-like isoform 1 [Glycine max] gi|356536129|ref|XP_003536592.1| chr5 30209571 30211898 +
2 domain predictions
1 GO term
Lj5g3v2245910.1
n.a. PREDICTED: probable protein phosphatase 2C 64-like [Glycine max] gi|356536388|ref|XP_003536720.1| chr5 32547182 32551589 +
2 domain predictions
1 GO term
Lj5g3v2288670.1
n.a. PREDICTED: probable protein phosphatase 2C 11-like isoform X1 [Cicer arietinum] gi|502121442|ref|XP_004497321.1| chr5 33334782 33338844 +
2 domain predictions
1 GO term
Lj6g3v1090120.1
n.a. PREDICTED: probable protein phosphatase 2C 27-like [Cicer arietinum] gi|502151361|ref|XP_004508403.1| chr6 13234417 13237751 -
2 domain predictions
1 GO term
Lj6g3v1211810.1
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502165170|ref|XP_004513451.1| chr6 15043730 15046934 -
2 domain predictions
1 GO term
Lj6g3v1573440.1
n.a. rfls10 protein [Glycine max] gi|345651734|gb|AEO14877.1| chr6 17870421 17872927 -
2 domain predictions
1 GO term
Lj6g3v1573450.1
n.a. rfls10 protein [Glycine max] gi|345651734|gb|AEO14877.1| chr6 17870747 17872927 -
2 domain predictions
1 GO term
Lj6g3v1901390.1
n.a. PREDICTED: probable protein phosphatase 2C 35-like isoform 2 [Glycine max] gi|356549035|ref|XP_003542904.1| chr6 21295071 21299138 +
2 domain predictions
1 GO term
Lj6g3v1915670.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr6 21444067 21448677 -
2 domain predictions
1 GO term
Lj6g3v1915690.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr6 21445352 21448531 -
2 domain predictions
1 GO term
LotjaGi1g1v0087200.1
n.a. Protein phosphatase 2C-like protein; TAIR: AT1G07430.1 highly ABA-induced PP2C protein 2; Swiss-Prot: sp|Q9LNW3|P2C03_ARATH Protein phosphatase 2C 3; TrEMBL-Plants: tr|A0A0R4J5P1|A0A0R4J5P1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0087200 LjG1.1_chr1 12608971 12611618 -
2 domain predictions
1 GO term
LotjaGi1g1v0118100.1
n.a. Protein phosphatase 2C; TAIR: AT2G30020.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|O80871|P2C25_ARATH Probable protein phosphatase 2C 25; TrEMBL-Plants: tr|A0A151RT57|A0A151RT57_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0118100 LjG1.1_chr1 18589306 18592035 -
2 domain predictions
1 GO term