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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0012400 |
| Transcript ID | LotjaGi3g1v0012400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G11420.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|Q3SG64|RLMH_THIDA Ribosomal RNA large subunit methyltransferase H; TrEMBL-Plants: tr|I1M5Q9|I1M5Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1335632..1338806) extracted from Lotus japonicus Gifu genome v1.2.
GGAATCTTGATGAAATGCATGGTTTTAGGATAGGATAGTTCCAGTGGCATTAATGTAGTTTTACACAAAATTCAGTGGCC TTTTCATGTAACGATTCAAATAAAACCGGGTGCTCACACGAACTTGGAACTCAACCATTACTCACATAAATCTCTCTCTT TCTCTCTTTCTCTCCCTCTATCTCTCAATTCTTCAAAATGCAGAAGCTCAAGCTGCTATTAGTGTTGTTCATCTCAGCAT GTCACACTGCTTTGTCCTTCATAGATGGTAAGTTATAATTAACTCCAATCACTTCTTTATTCTGCTTCAAAATCTTTCGA CTATCATATTTTTACTCAAAATCAATACCGACACATCGAGAGACACATTAGTTTCTTCTCAAAATTGATTTTCATTTTAA AAGGATTTGATATCGATGCAATGCTTTGATCCAATTCACTCACTGGAAGCCTTAGAACTGACCTTTCTTCCTTGTACTTC AATTTGGAACTTTGCATGTCCATGTGAAATGGTAGTAGTTTTGCTCTGCATCAGGTTGTAGTTTACCTCATTAGTGTCGG TATTTGACTCACTCTAATCTCTGATTTTCTTGTAGTGGTTAGATCTTAAGGCATTCTATTATTGTTCATATATTAAACTA ATTTTTCTACCATGGCAAAATTAACCCTCAGATTTACATTTTTTTTCAAATGTTCATTCTGCTTGAACTAGAATAGTTGT CCATAGTTAACCAATTCTTATAGTTCAACCATATTTTCTAAAAATCGTAGGAAAAGTCTGCTGTGTCATGTATGAGATAG CTTATCATATTTCTCATAGGAATAATTAATTTTGTCCACTTATTTTCACTTTTATCCCATTTTCAGCTCCTTTCTTACTT AGTTTTTCCATTTTTTTCATCAAATTATCAATTTACTGAAAATAAAAGCAACATATGGTGATACAAAAGCTGTAGTTTTG ATATTCAAACAAAGAAAAGAAAAATGTTATGCCCCAGTACTATAATATTTTCGCATAAAAATTTAATTTACGGATATATT ATTGTACATGATTTTTTAAATGTATCACTTTTATGTTCTTATATAGGTTACTAGAACTAAAGTGTAAATAGACAATATAA AACAGGATAAAAAATGCTGATTATTTCAATTTCCATTCATGCATAGTTCCTATATTTAAAAAATAGGGATCACAAGTACA TAATATTAATAGTTTTAAGGATTAGAAATAAATTAAAATCAAAACTAAAATTTATCAGTTTTATAGAAATAAAAGACATA TAGCTTGCACTAACATTGAGCAATCTCTTCACGTGGCTTAGTCAGTTTTTCATGTGCTCATAGCTTGCACTAACATGATA CTGATCACATACTCACATGGGAACAAGACCAAAAAGTGGTCTTGAGAAAGAAACTACAACTAGTTCATTTAAATTCGTAG AAAACAGAGTAATGAACTCAGCAAGTGCTTGCAAATTTTTTCAGGTCCATTGCCAAATGGTGGCTTCGAGAAAGGGCCAA AACCAGTCCAATTGAAAGGGTCAGTGGTGACCGGGAAGGATGCAATTCCGGATTGGACAACTTCAGGGTTCGTCGAATAC ATAAAGTCAGGGCAACAACAAGGCGACATGTTGCTAGTGGTGCCCGAGGGCAAATACGCGGTTAGACTTGGCAACGAAGC TTCCATTAAGCAGAAGGTTAGACCATATATATATATGTTATATTTTTAATATGTCATCGTCAACTTAAGCAGAGGTCTTA GATTCGATCATTAATATTTAATATTGTATTTTTAACAGGTGAAGTTGGCTAAGGGGTTGTTCTACTCGATCACGTTCAGC GCGGCCCGCACATGCGCGCAGGAGGAGAAGCTGAACGTGTCGGTGGTGCCAACCAATGAGAAGAAGGATTGGGGAATCAT CCCCATTCAAACAATGTATGGTAGCAATGGTTGGGAATCATTTGCTTGTGGGTTTAGAGCAGATTATCCAGAAGGAGAAA TTGTGATCCATAACCCTGGTGTTGAAGAGGATCCAGCTTGTGGCCCACTTATTGATTCTGTTGCCTTGAAGGTTTTGAAC CCACCCAGAAGAACCAGAGGTGAATTGAGTTCTTCTTTCTCTGGGCTCTTCTGACTATGATTTTGACTTCAATGTGATTT TCGAATGAGTTTCCAAATATGCACTTTTTTTTTATAGCTGAATTACCATTTTGGGACACACATAAAGTTGACTAAATTTG GTATTTTACATTGTTGATGCAGACAATTTGCTTAAAAATGGGAACTTTGAAGAAGGTCCTTATATGTCTCCTCGTGAGTC TTGGGGGGTTTTGATCCCACCCCACGCTGAGGACAGTCATGGTCCTTTACCAGGATGGATAGTTGAGTCTCTGAAGGCTG TGAAGTATGTTGATTCTGACCACTTTGCTGTGCCTGAGGGAAAAAGAGCAATTGAGCTTGTTGCAGGAAAAGAAAGTGCT ATTGCACAAGTTGTGATCACTTACATTGGCAAGGTTTATGACCTCACATTCTCTGTTGGTGATGCCAACAATGCATGTGA AGGTTCCATGGTGGTAGAAGCATTTGCTGGTCAAGACACTGTCCAAGTTCCTTATCAATCTAAGGGCAAAGGAGGGTCTG TTACAGGGAAACTAAGGTTTAAGGCTGTGACAGAACGAACTCGCATCAGGTTCCTAAGCACATTTTACACCATGAAGAAT GATAACTCTGGTTCTCTTTGTGGACCTGTTATTGATGATGTCAAATTGCTCAGTGTTCGCTATCCTAACAAACACCCTTG ATGAAGAGATTGTGTAGCTAAAGTCAGAATCAATTCTGTGAAGAAGCTTTGGCGAGCAGCTTTTGGGTTTCAAGATTGGT TTTGAGGGAAAAGAAGTTAATACGAACATGTTATAATGAAATCAAAATGTTGAGTAATTAATCTATTTAGTTAAGCATAT ATACTCTAGGGTAATTCATGTAAGAATAGGAAGTGTTGTTGAGTGAGCTTATGGAGTTTCATTCATGTATTTAATTTACA TTATAATATAAATCTGCTACACTTGTTTTCATGTTTTCCAATTGAGAGTTGTTTTGTTTCTCACTTATAATTTCAAATTT TCTATCAAGGATACTGCTCTGGTTCCTCCTCTTCAATGAGAGGGTTTTGCTAACC
CDS sequence (LotjaGi3g1v0012400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAGCTCAAGCTGCTATTAGTGTTGTTCATCTCAGCATGTCACACTGCTTTGTCCTTCATAGATGGTCCATTGCC AAATGGTGGCTTCGAGAAAGGGCCAAAACCAGTCCAATTGAAAGGGTCAGTGGTGACCGGGAAGGATGCAATTCCGGATT GGACAACTTCAGGGTTCGTCGAATACATAAAGTCAGGGCAACAACAAGGCGACATGTTGCTAGTGGTGCCCGAGGGCAAA TACGCGGTTAGACTTGGCAACGAAGCTTCCATTAAGCAGAAGGTGAAGTTGGCTAAGGGGTTGTTCTACTCGATCACGTT CAGCGCGGCCCGCACATGCGCGCAGGAGGAGAAGCTGAACGTGTCGGTGGTGCCAACCAATGAGAAGAAGGATTGGGGAA TCATCCCCATTCAAACAATGTATGGTAGCAATGGTTGGGAATCATTTGCTTGTGGGTTTAGAGCAGATTATCCAGAAGGA GAAATTGTGATCCATAACCCTGGTGTTGAAGAGGATCCAGCTTGTGGCCCACTTATTGATTCTGTTGCCTTGAAGGTTTT GAACCCACCCAGAAGAACCAGAGACAATTTGCTTAAAAATGGGAACTTTGAAGAAGGTCCTTATATGTCTCCTCGTGAGT CTTGGGGGGTTTTGATCCCACCCCACGCTGAGGACAGTCATGGTCCTTTACCAGGATGGATAGTTGAGTCTCTGAAGGCT GTGAAGTATGTTGATTCTGACCACTTTGCTGTGCCTGAGGGAAAAAGAGCAATTGAGCTTGTTGCAGGAAAAGAAAGTGC TATTGCACAAGTTGTGATCACTTACATTGGCAAGGTTTATGACCTCACATTCTCTGTTGGTGATGCCAACAATGCATGTG AAGGTTCCATGGTGGTAGAAGCATTTGCTGGTCAAGACACTGTCCAAGTTCCTTATCAATCTAAGGGCAAAGGAGGGTCT GTTACAGGGAAACTAAGGTTTAAGGCTGTGACAGAACGAACTCGCATCAGGTTCCTAAGCACATTTTACACCATGAAGAA TGATAACTCTGGTTCTCTTTGTGGACCTGTTATTGATGATGTCAAATTGCTCAGTGTTCGCTATCCTAACAAACACCCTT GA
Protein sequence (LotjaGi3g1v0012400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKLKLLLVLFISACHTALSFIDGPLPNGGFEKGPKPVQLKGSVVTGKDAIPDWTTSGFVEYIKSGQQQGDMLLVVPEGK YAVRLGNEASIKQKVKLAKGLFYSITFSAARTCAQEEKLNVSVVPTNEKKDWGIIPIQTMYGSNGWESFACGFRADYPEG EIVIHNPGVEEDPACGPLIDSVALKVLNPPRRTRDNLLKNGNFEEGPYMSPRESWGVLIPPHAEDSHGPLPGWIVESLKA VKYVDSDHFAVPEGKRAIELVAGKESAIAQVVITYIGKVYDLTFSVGDANNACEGSMVVEAFAGQDTVQVPYQSKGKGGS VTGKLRFKAVTERTRIRFLSTFYTMKNDNSGSLCGPVIDDVKLLSVRYPNKHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 5 | 371 | 367 | 3.9E-208 | – | |
| PANTHER | 5 | 371 | 367 | 3.9E-208 | – | |
| Phobius | 6 | 15 | 10 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 373 | 353 | - | – | |
| Pfam | 25 | 185 | 161 | 3.7E-63 | ||
| Gene3D | 192 | 364 | 173 | 8.4E-6 | ||
| Pfam | 196 | 363 | 168 | 1.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0012400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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