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IPR006946 is a DUF642 L-galactono-1,4-lactone-responsive gene 2-like domain.
<p>This entry represents a domain found twice in the protein DUF642 L-galactono-1,4-lactone-responsive gene 2 from Arabidopsis thaliana (DGR2) and similar proteins found in plants and bacteria. DGR2 is involved in the regulation of testa rupture during seed germination [[cite:PUB00101375]] and in the development of roots and rosettes [[cite:PUB00101376]]. This domain was previously known as DUF642.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Uncharacterized protein TCM_028364 [Theobroma cacao] gi|508779312|gb|EOY26568.1| | 12 | ||
| – | F17A17.37 protein [Theobroma cacao] gi|508704754|gb|EOX96650.1| | 13 | ||
| – | Uncharacterized protein TCM_028364 [Theobroma cacao] gi|508779312|gb|EOY26568.1| | 16 | ||
| – | F17A17.37 protein [Theobroma cacao] gi|508704754|gb|EOX96650.1| | 4 | ||
| – | F17A17.37 protein [Theobroma cacao] gi|508704754|gb|EOX96650.1| | 13 | ||
| – | AT5g25460/F18G18_200 [Arabidopsis thaliana] gi|15809822|gb|AAL06839.1| | 12 | ||
| – | Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Medicago truncatula] gi|357447333|ref|XP_003593942.1| | 17 | ||
| – | Transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G11420.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|Q9FZ29|MAN1_ARATH Mannan endo-1,4-beta-mannosidase 1; TrEMBL-Plants: tr|I1K8X9|I1K8X9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386800 | 13 | ||
| – | Transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G11420.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|P0AB10|YMBA_ECOLI Uncharacterized lipoprotein YmbA; TrEMBL-Plants: tr|I1K8X9|I1K8X9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386800 | 13 | ||
| – | Transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G11420.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|Q3SG64|RLMH_THIDA Ribosomal RNA large subunit methyltransferase H; TrEMBL-Plants: tr|I1M5Q9|I1M5Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012400 | 13 | ||
| – | Transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G25460.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|Q1C0D5|XYLG_YERPA Xylose import ATP-binding protein XylG; TrEMBL-Plants: tr|A0A0S3SFC0|A0A0S3SFC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012400 | 6 | ||
| – | Choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); TAIR: AT5G25460.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|P32167|YIIX_ECOLI Uncharacterized protein YiiX; TrEMBL-Plants: tr|A0A0S3SFC0|A0A0S3SFC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012400 | 4 | ||
| – | Imidazolonepropionase (Protein of unknown function, DUF642); TAIR: AT3G08030.1 DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642); Swiss-Prot: sp|Q08412|CUE5_YEAST Ubiquitin-binding protein CUE5; TrEMBL-Plants: tr|I3SFV6|I3SFV6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0120700 | 12 | ||
| – | Imidazolonepropionase (Protein of unknown function, DUF642); TAIR: AT3G08030.1 DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642); Swiss-Prot: sp|Q08412|CUE5_YEAST Ubiquitin-binding protein CUE5; TrEMBL-Plants: tr|I3SFV6|I3SFV6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0120700 | 4 | ||
| – | Imidazolonepropionase (Protein of unknown function, DUF642); TAIR: AT3G08030.1 DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642); Swiss-Prot: sp|Q08412|CUE5_YEAST Ubiquitin-binding protein CUE5; TrEMBL-Plants: tr|I3SFV6|I3SFV6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0120700 | 4 | ||
| – | Transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G11420.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|H9TB18|AOXD_CAVPO Aldehyde oxidase 4; TrEMBL-Plants: tr|A0A151SXQ9|A0A151SXQ9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0359600 | 15 | ||
| – | Choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); TAIR: AT5G11420.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|P15989|CO6A3_CHICK Collagen alpha-3(VI) chain; TrEMBL-Plants: tr|A0A151SXQ9|A0A151SXQ9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0359600 | 7 | ||
| – | Imidazolonepropionase (Protein of unknown function, DUF642); TAIR: AT3G08030.1 DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642); Swiss-Prot: sp|A9B0X2|FPG_HERA2 Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|I3SH19|I3SH19_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0549700 | 14 | ||
| – | Imidazolonepropionase (Protein of unknown function, DUF642); TAIR: AT3G08030.1 DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642); Swiss-Prot: sp|A9B0X2|FPG_HERA2 Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A0B2PVY8|A0A0B2PVY8_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0549700 | 6 | ||
| – | Imidazolonepropionase (Protein of unknown function, DUF642); TAIR: AT3G08030.1 DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642); Swiss-Prot: sp|A9B0X2|FPG_HERA2 Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|G7JTL9|G7JTL9_MEDTR DUF642 family protein; Found in the gene: LotjaGi3g1v0549700 | 6 | ||
| – | Transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G11420.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|P85063|ALLD3_ACTDE Allergen Act d 3 (Fragments); TrEMBL-Plants: tr|I1M9K9|I1M9K9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0061300 | 13 | ||
| – | Transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G25460.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|A7GSY1|END4_BACCN Probable endonuclease 4; TrEMBL-Plants: tr|G7I6D7|G7I6D7_MEDTR Plant/F18G18-200 protein; Found in the gene: LotjaGi5g1v0061300 | 6 | ||
| – | Transmembrane protein, putative (Protein of unknown function, DUF642); TAIR: AT5G11420.1 transmembrane protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|P85063|ALLD3_ACTDE Allergen Act d 3 (Fragments); TrEMBL-Plants: tr|G7I6D7|G7I6D7_MEDTR Plant/F18G18-200 protein; Found in the gene: LotjaGi5g1v0061300 | 6 | ||
| – | Choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); TAIR: AT1G29980.1 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|O94342|YHM9_SCHPO Probable metabolite transport protein C1271.09; TrEMBL-Plants: tr|I3T893|I3T893_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0308600 | 17 | ||
| – | Choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); TAIR: AT1G29980.2 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|O94342|YHM9_SCHPO Probable metabolite transport protein C1271.09; TrEMBL-Plants: tr|I3T893|I3T893_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0308600 | 7 | ||
| – | Choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); TAIR: AT1G29980.2 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|O94342|YHM9_SCHPO Probable metabolite transport protein C1271.09; TrEMBL-Plants: tr|I3T893|I3T893_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0308600 | 11 | ||
| – | Choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); TAIR: AT1G29980.2 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642); Swiss-Prot: sp|O94342|YHM9_SCHPO Probable metabolite transport protein C1271.09; TrEMBL-Plants: tr|I3T893|I3T893_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0308600 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| TRANSMEMBRANE | Phobius | 1 | 3.70 |