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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0020800 |
| Transcript ID | LotjaGi3g1v0020800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Avr9/Cf-9 rapidly elicited protein; TAIR: AT3G16330.1 Avr9/Cf-9 rapidly elicited protein; Swiss-Prot: sp|P0CP93|CWC27_CRYNB Peptidyl-prolyl isomerase CWC27; TrEMBL-Plants: tr|I1MCU2|I1MCU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0020800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2144344..2146290) extracted from Lotus japonicus Gifu genome v1.2.
GTAAACATAAAACACAAATATGTTGAACATCTAAAGTATGGAATTGGCCCTTCAATGTGCGGCTAGCTTGAGGTTGGTTT CAACCTAACCACACTCTTTACTTTTTTTTTACAGGCAACCACACTCTTTACTTACTTTACTTCCTCTCCTCTCCATTCCT AAAGTAGAGCCTCCCCCAATAATGCTCTCATTAAAATAATAGTAAAACAAAGCAACTCATTACCTCCACAATTTTCTTCT TCTCTTCTTTTCACCCATCTCCTGCTACCACTATATATACACCCCCATCACACCATCCCTCTTGCCATTCAAACCATTTC CTCTTCTCTCTCAATTCAAAATATCTCTCTCTCTCTCTCAAATCATTCAAACAAAAACATCTTTCTTATTTCTAAAAGAA AACTAAAGAAAAACAAGAAGTAGAAATGGAAATGGAAAGTAATGCACCAGCAGTAGCTAAAAGAGTGTGGAGTATGGTAC GTGTGGTTTACTTCATGTTGAGAAAAGGCATCTTAAAAGGCAAGCTCATGATGGATCTCAAAAATATCATGCTCAGACGC CGCGGCAAGCTCGCCGGCAAAGCCATTGCCAACCTCATGTTCCACCACAACCACGGCGGCGCCACCACCACCTCACACCC TCAATTCTCTGCCTCCAGGGAGTATGAGTTCAGCTGCAGCAACACCCCCAACTACAACTTCTTCTCCACCGGGAAGCGCA ACCGCCACAGCAACCATCACAACAACCACTTCTTCACCAGCGCTCACGTGCCGCCCAGGCAGGATGACGAGGCGGTGACT GCAAACGCCGTGAAGGCGGTGCTGGAGATGCTGAACAGTGATACAGAGGTGTTCTATTCCCCTGCTCTTCCCGGGAAGGT GAGGCAGTTGAGGGTGACAGACTCGCCGTTTCCGCTGCGAGAGGCGGAGGATGAAAAGGACAACCAGGTGGACAAGGCGG CGGAAGAGTTCATAAAGAGGTTTTATAAGGATTTGAGGAAGCAAGATTGAATTGATTTGAATTTTGGATTGAATAGAACC TACTACCATCAACTATGTAAATCATTAATAGCGCAGATTTTTTCCCCTTTCTGCCATAATGTTTCACCTATATAATTGAA TATTGATATGAGTTCATGCCGTGGTAAATGACTTTTTAAAATATCACCAAAGTACATAAGTGTGTGTTTGGATGCAAAGG CTCTCAAAGGGACCTAGTCTGGCTGACTCGAGCTGGCTTGCTCACCACATGCTATAAGAAAAGAAAGGTGCTTGGTATGA TACCACAATACTTAGTTGGGGTATGATTCATAAGATGATGTGTACCAATTAAATAAATCCATAGTGTAATTAATTAAGCA CTTTTTCTTTTTGTTTTTCTGTTATTATTAATTTTATCATTTACAAAGTAGTCCTCACTTAATGTATTAATTGAGAATAA ATCTCCTCCTCTTCCTTCCCCAAAACACTGAATTCCGTCAGTGGCGCAGGAGGTTCAGGTCAAATCTGCAAAGGCTATGA GCGGAGGAGGAGGCGTCGCCGCCCTCAGTAGTAGTCACAGCGATGTCGGTATTGGCGGCGTTGACGCTGCTGTGGTTATT GTTGCTGCTCTTGTCATTTCGTAGTGGCACCGCTTGCGACCGTCAAGGGTCTGGCCAGTAGGGAAGCTCTTGTGACAGAT TGAACACTTGTGCATCTTCCCGCTGTTGCTGATGACCGTGACAGTGGAGGTCGAGACGTTGTCGTTGACGGCGGTGGCGG GATGAGTTTCCGATGAGGATTTGCAGTGGCTGGCTTTGTGGCCGTCGAGTGCTTGGTAAGGTGGGAAGGCTTTGTTGCAC ACGCTGCACTTGTGAGTGAGTTTCAGCGGTTGTGATTGTGGTTTGGCTGTGATTATGACTGTGAATTGGATGATGATTCT GCACACAAGGTGTTTGTGTTATTGTCT
CDS sequence (LotjaGi3g1v0020800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGGAAAGTAATGCACCAGCAGTAGCTAAAAGAGTGTGGAGTATGGTACGTGTGGTTTACTTCATGTTGAGAAA AGGCATCTTAAAAGGCAAGCTCATGATGGATCTCAAAAATATCATGCTCAGACGCCGCGGCAAGCTCGCCGGCAAAGCCA TTGCCAACCTCATGTTCCACCACAACCACGGCGGCGCCACCACCACCTCACACCCTCAATTCTCTGCCTCCAGGGAGTAT GAGTTCAGCTGCAGCAACACCCCCAACTACAACTTCTTCTCCACCGGGAAGCGCAACCGCCACAGCAACCATCACAACAA CCACTTCTTCACCAGCGCTCACGTGCCGCCCAGGCAGGATGACGAGGCGGTGACTGCAAACGCCGTGAAGGCGGTGCTGG AGATGCTGAACAGTGATACAGAGGTGTTCTATTCCCCTGCTCTTCCCGGGAAGGTGAGGCAGTTGAGGGTGACAGACTCG CCGTTTCCGCTGCGAGAGGCGGAGGATGAAAAGGACAACCAGGTGGACAAGGCGGCGGAAGAGTTCATAAAGAGGTTTTA TAAGGATTTGAGGAAGCAAGATTGA
Protein sequence (LotjaGi3g1v0020800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMESNAPAVAKRVWSMVRVVYFMLRKGILKGKLMMDLKNIMLRRRGKLAGKAIANLMFHHNHGGATTTSHPQFSASREY EFSCSNTPNYNFFSTGKRNRHSNHHNNHFFTSAHVPPRQDDEAVTANAVKAVLEMLNSDTEVFYSPALPGKVRQLRVTDS PFPLREAEDEKDNQVDKAAEEFIKRFYKDLRKQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 193 | 188 | 1.2E-71 | – | |
| PANTHER | 6 | 193 | 188 | 1.2E-71 | – | |
| Pfam | 172 | 193 | 22 | 2.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0020800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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