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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0050500 |
Transcript ID | LotjaGi3g1v0050500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Aspartic proteinase; TAIR: AT1G11910.1 aspartic proteinase A1; Swiss-Prot: sp|Q42456|ASPR1_ORYSJ Aspartic proteinase oryzasin-1; TrEMBL-Plants: tr|A0A072V2S8|A0A072V2S8_MEDTR Fungal proteinase A, aspartic proteinase superfamily protein; Found in the gene: LotjaGi3g1v0050500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5260707..5263879) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTTCAAGTATTTGCTGGTTGTGGTTTGTCTTGGGGCTTTGGTTAGATCATTGGCTTTTACAACTTCTGATGATGG CTTAATGAGGGTTAGTCTTAAAAGAAGGAGTTTAGATATTCAAAGTCTTAATTCTGCAAGGATCAAGGAAGCTGTTCATC ATAGAGGTGTAGGTAGTGTTAATAAGAATAATTTAGTAACAGATGTAGTGTATCTAAAGAATTATCTTGATGCACAATAT TTTGGGGAAATTGGTATTGGCTCACCTCCACAAAGCTTCAAAGTTGTGTTTGACACTGGAAGCTCAAACCTTTGGGTCCC TTCTTCCAAATGCATCTTGTCTGTAAGTTACCCTATGCTCTAATGCAATTTAGTACTCCTTTAATTTTGTTTTCTTTGAT CGTGCTTGTTTCTAAAACGAGTTTTTACTTTGTGCAGATTGCTTGCCATATTCATTCCAAGTATAGGTCGAAGCTGTCTA GCACTTATACGAAAATAGGTAATTCTGGATTAGCTTGAAATTTCATCTGAAGTTCTTCCGTTTGGCTTTACATGTACAAA CTGAATATTGTTTTGGGAAGCTTCTTTTGTTGTGGTTGTTATGACGCTTAAGCTCGAAGTTTCTGTTTGGGAATTGATCA GGAACACCTTGCAAAATCCCTTTCAGCCGTGGACACATCCCTGGCTTCTTCAGCCAAGATAATGTAAAAGTTGGGAATAT CATAGTCAAAGATCAGGTCAACATTTTGACTCTTAATTCTTTTTAATCAGCATTTTGATTGGTTGATTTATTAAGTTTCA TTCCCATCCTCCAGGAATTTGCTGAGATCACAAAGGAAAAATCTTTGGAATTCTTAGCAATACATTTTGATGGCATACTT GGACTTGGATTCCAGGATATATCAGTTGGACAAGTCACACCAGTGTGGTAATCCATTTCAGTTTATAAATCTTGCTATCT TAAAAATGCTCAGGGCTTTGATTATCTATGGTGGTGATGGGGTAGAGGAAAAATCATACTTCCACCTTTATTGCCTAAGT TTTTGAAGCCTCAAATAAAGTTACTAGTTCTGGGAATACAGGTACAATATGATAGAACAAGGGCACATGGCTCAAAAAAT ATTCTCTCTTTGGCTAAACCAAGATCCAATGTCAAAGATAGGGGGTGAGATTGTCTTTGGTGGTATTGACTGGAGGCACT TTAGGGGTGACCATACTTATGTTCCAGTTTCTCAAAAAGGTTACTGGCAGGTATATTATAGTTACAACTATGTTGTCTTC TTTGTTGCTCTTATCATCAACCATGTCAGCTTTGAATTTTGATGTTTGCATATTCAGATTGAGGTGGGAGATATTCAACT TGCAAAAAATTCAACAGGTTCTCATGCATTTCTATTATATTTTCATGTTTAATATGTATGTCTTGTATTTTTATTGTTTC TTATACAGTTAGAGTGAATTCTATCTAAGTAGAGACTAAAATTGTTGAAGATTCCATAATATTAAGAAGTTACACATTAG TACCTTATCCAGAGAAGCCATTCGAATTTCTACAGCCTTTGATTGTTGATTTTTCATTGAAACTGTCCTCTTATCTCCTT TTTCACAATGTCAATATGTTTTGACTCCCAACTTGCAACCCGGAAATTCTTGGTATTGCACTTCTTTCATTTCTACAAAC CAGACTTACAACACTAGATTTGTATTTACAGGGTTATGTCAGGGTGGCTGTTCTGCCATTGTTGACTCAGGGACATCTTT CATTGCTGGTCCAACAGTATGATAATCTGAAACATCATACTTCTCTATCTTGGTGCTTACATTTTTTTTATCCCTTATAC TTCGGTGTCTTTTTCTTACTAGTTCTTGTTTGCAGAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGATAT GTGAGTTATGAATGTAAAAACATCATCCATAACCATGGCGATTCCATATGGGAATTCTTAACTTCTGGGGTTTGTTCTCT ATCCTTTTCCCTTTACAATCACAGTGACTATCCAAACCTCTACTAGAATTTTAACCATCCTTTACATACCTTTTATGTCT TCAGTTAAAACCTGAAATTATATGCGGTGACATTGGACTATGCTCGCGTAATGGATCACATATAACGAAGTACAATGATT TTTCATTTTCCTCCTGCTGATTCTTTTGATACAGATTCTCTTTTTCAGTCCTCTTAACAAAAATCCAACTTTTGTTACAG TGATGTTATTGAAACAGTGTTGCATAATGAAAGTAGAGGTGACTCAAGAACCAGGGAGAGCCCCTTGTGTACTTTCTGTG ATATGATTGTCCTTTGGATTCAAATTCAGCTTAAGCAAAGGAATACAAAAGAAAAAGCATTGAAATATGTGGATGAGGTA ATTGTTGTACAAGATATCACATCTCAAAATTATGACATGTTTGAATACACAGTGGAAAACCAGGGTGAAACCAAAATCAT AGTGGAGAACCACAAAATCTATGGGAAGTTGCTTTTGTCCACCGTGATTTTGGCTCACTAAAATTTTTCACCTTATATAC TAAGATGGACTTGTGCTTCTTATTTCGGGTTGAGCATTTAATAACTCTACTTTTCCAATTAAGGACTCACAAGCTTTTCC TTTGTTATTCTTTTCCCCTTTTCTGTAAAAGCTGTGTGAGAAGCTTCCCAATCCTGTGGGACAATCATTCATAAACTGCA ATAGCATTGAAGCTATGCCACAAATTACATTCATGATTGGGAACAAATCATTTACTCTCTCTCCAGAACAGGTCTTAGTT CTATGATCAATTGCTGTAATCCTCATTTGCTATATCAACATGACTTCTTTGTTGTAATCTTTATTCATCTTTGGATAACT ATTACTTATAAGTTCAGAGTGATAATATTCCTTTTTTGTTCTCAGTATGTCCTAAGAATCGAAGAAGGCTGCTCAACTGT TTGCTATGGTGGTTTTGTTGCTTTAGATGTGCCTCCTCCACAGGGTCCCCTCTGGTAATAAATTAATTAATTGCAAATTA TTATTTGAATTCTTTATGAAGTATATGACAGTTGAAGTATGGTTGCAGGGTTCTTGGAGATATATTTTTGGGGGCATACC ATACAGTTTTTGACTATGGCAATCTCCGTATAGGATTTGCTGAAGCTGCATAA
CDS sequence (LotjaGi3g1v0050500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCAAGTATTTGCTGGTTGTGGTTTGTCTTGGGGCTTTGGTTAGATCATTGGCTTTTACAACTTCTGATGATGG CTTAATGAGGGTTAGTCTTAAAAGAAGGAGTTTAGATATTCAAAGTCTTAATTCTGCAAGGATCAAGGAAGCTGTTCATC ATAGAGGTGTAGGTAGTGTTAATAAGAATAATTTAGTAACAGATGTAGTGTATCTAAAGAATTATCTTGATGCACAATAT TTTGGGGAAATTGGTATTGGCTCACCTCCACAAAGCTTCAAAGTTGTGTTTGACACTGGAAGCTCAAACCTTTGGGTCCC TTCTTCCAAATGCATCTTGTCTATTGCTTGCCATATTCATTCCAAGTATAGGTCGAAGCTGTCTAGCACTTATACGAAAA TAGGAACACCTTGCAAAATCCCTTTCAGCCGTGGACACATCCCTGGCTTCTTCAGCCAAGATAATGTAAAAGTTGGGAAT ATCATAGTCAAAGATCAGGAATTTGCTGAGATCACAAAGGAAAAATCTTTGGAATTCTTAGCAATACATTTTGATGGCAT ACTTGGACTTGGATTCCAGGATATATCAGTTGGACAAGTCACACCAGTGTGGTACAATATGATAGAACAAGGGCACATGG CTCAAAAAATATTCTCTCTTTGGCTAAACCAAGATCCAATGTCAAAGATAGGGGGTGAGATTGTCTTTGGTGGTATTGAC TGGAGGCACTTTAGGGGTGACCATACTTATGTTCCAGTTTCTCAAAAAGGTTACTGGCAGATTGAGGTGGGAGATATTCA ACTTGCAAAAAATTCAACAGGGTTATGTCAGGGTGGCTGTTCTGCCATTGTTGACTCAGGGACATCTTTCATTGCTGGTC CAACAAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGATATGTGAGTTATGAATGTAAAAACATCATCCAT AACCATGGCGATTCCATATGGGAATTCTTAACTTCTGGGTTAAAACCTGAAATTATATGCGGTGACATTGGACTATGCTC GCGTAATGGATCACATATAACGAATGATGTTATTGAAACAGTGTTGCATAATGAAAGTAGAGGTGACTCAAGAACCAGGG AGAGCCCCTTGTGTACTTTCTGTGATATGATTGTCCTTTGGATTCAAATTCAGCTTAAGCAAAGGAATACAAAAGAAAAA GCATTGAAATATGTGGATGAGCTGTGTGAGAAGCTTCCCAATCCTGTGGGACAATCATTCATAAACTGCAATAGCATTGA AGCTATGCCACAAATTACATTCATGATTGGGAACAAATCATTTACTCTCTCTCCAGAACAGTATGTCCTAAGAATCGAAG AAGGCTGCTCAACTGTTTGCTATGGTGGTTTTGTTGCTTTAGATGTGCCTCCTCCACAGGGTCCCCTCTGGGTTCTTGGA GATATATTTTTGGGGGCATACCATACAGTTTTTGACTATGGCAATCTCCGTATAGGATTTGCTGAAGCTGCATAA
Protein sequence (LotjaGi3g1v0050500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFKYLLVVVCLGALVRSLAFTTSDDGLMRVSLKRRSLDIQSLNSARIKEAVHHRGVGSVNKNNLVTDVVYLKNYLDAQY FGEIGIGSPPQSFKVVFDTGSSNLWVPSSKCILSIACHIHSKYRSKLSSTYTKIGTPCKIPFSRGHIPGFFSQDNVKVGN IIVKDQEFAEITKEKSLEFLAIHFDGILGLGFQDISVGQVTPVWYNMIEQGHMAQKIFSLWLNQDPMSKIGGEIVFGGID WRHFRGDHTYVPVSQKGYWQIEVGDIQLAKNSTGLCQGGCSAIVDSGTSFIAGPTSVVTQINHAIGAEGYVSYECKNIIH NHGDSIWEFLTSGLKPEIICGDIGLCSRNGSHITNDVIETVLHNESRGDSRTRESPLCTFCDMIVLWIQIQLKQRNTKEK ALKYVDELCEKLPNPVGQSFINCNSIEAMPQITFMIGNKSFTLSPEQYVLRIEEGCSTVCYGGFVALDVPPPQGPLWVLG DIFLGAYHTVFDYGNLRIGFAEAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 501 | 501 | 2.5E-165 | ||
PANTHER | 1 | 501 | 501 | 2.5E-165 | – | |
SignalP_EUK | 1 | 20 | 20 | - | – | |
Phobius | 1 | 5 | 5 | - | – | |
SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
Phobius | 1 | 20 | 20 | - | – | |
Phobius | 6 | 16 | 11 | - | – | |
SUPERFAMILY | 9 | 503 | 495 | 3.87E-108 | ||
Phobius | 17 | 20 | 4 | - | – | |
Phobius | 21 | 504 | 484 | - | – | |
Gene3D | 28 | 238 | 211 | 7.1E-61 | ||
Pfam | 79 | 503 | 425 | 1.7E-116 | ||
ProSiteProfiles | 80 | 501 | 422 | 68.162 | ||
PRINTS | 86 | 106 | 21 | 4.7E-27 | ||
ProSitePatterns | 95 | 106 | 12 | - | ||
PRINTS | 232 | 245 | 14 | 4.7E-27 | ||
PRINTS | 282 | 293 | 12 | 4.7E-27 | ||
ProSitePatterns | 282 | 293 | 12 | - | ||
Gene3D | 309 | 413 | 105 | 1.6E-26 | – | |
ProSiteProfiles | 310 | 350 | 41 | 10.984 | ||
SUPERFAMILY | 311 | 413 | 103 | 3.36E-22 | ||
Pfam | 314 | 346 | 33 | 9.6E-10 | ||
ProSiteProfiles | 374 | 460 | 87 | 11.015 | ||
Pfam | 376 | 413 | 38 | 2.7E-8 | ||
PRINTS | 477 | 492 | 16 | 4.7E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
Expression pattern of LotjaGi3g1v0050500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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