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LotjaGi3g1v0058700.5

Overview

Field Value
Gene ID LotjaGi3g1v0058700
Transcript ID LotjaGi3g1v0058700.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description HIT zinc finger protein; TAIR: AT5G63830.1 HIT-type Zinc finger family protein; Swiss-Prot: sp|Q2TBW5|ZNHI2_BOVIN Zinc finger HIT domain-containing protein 2; TrEMBL-Plants: tr|A0A151S736|A0A151S736_CAJCA Zinc finger HIT domain-containing protein 2; Found in the gene: LotjaGi3g1v0058700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:6177682..6182588) extracted from Lotus japonicus Gifu genome v1.2.

AAAATAGATTAGTCTGTATAAGTTAAAAAAAAAGTAGCAAGCCCAGCCAACGTCTCAGGCTCAGCCGCAAGGTACTTACT TACTTTCCGTCACTGGCACTGCAATCTATTTCTATCAAACGACGACGAGACGCATAAATAATCTCTCTTCTTTGTATCAG ACAGACAGACAGACATGGTGAGTAGTTTCTTTCTCTTTCTCCATTCATCACCTTTCTTTCACTGTGATTAATGAATGCAT CATTCATTCTTCTGCAAAATAAATAATCTCAGTTTTTGATTTGGGGTTTTCTGATTGATTTATTTAGGCGGGGCCATAGC TTATGAAACACAAATAGCTTATTGAATTTAAGCGCTTATGGTATAAGCTCTTATACAACAAGAATAAACGCTTAATTAAA CTGTTTTCCCACCCGTTTGGAAGAACTTATTTGAGCTTATCTGATAGTATAAGCGCTTGTGTATGTGTTTGGGAGAGCTT ATGCAAACTGTTTTGAGCTTATGGTAAGCCATAAGCTGTTTTGAGCTTATTTTCATAAGCTATCTTGAGATAGCTTATGA AAAAGAGCTTATGCTTGTATATAGCTTATTTTCAATTTATTTCAATAAATTTTTAAAAATAGCTTATGTCATACCATAAG CGCGCGCTTAATTAAGCTCTTTTCCCAAACGGGTTTATGGTTAGATGTTGATTTTGTGATCTCCACCCCATAACTTGCTG TTGTTATATCTCTGGTTCTGTAACATTGTCTCATTGAATTGGAACTTGAGGTTAGTAGTTTTCCTGAGTTGGAGCTTAAA AAAAAGAACCTACATTGAAGTTGAGTTGAGCCATGTGTTGAGGAAAGCGTGATCAGCTTAGCTTGGCTCATAGCTCATTT CTACTATGTTATGGCCCTATCTATAACTGTAACACCATGCAGGCAGACATTGGATGACCATATTTCCTAAAATATGAACA GTATAAAAAACTTTACAAGTGTATCTGGTCTGTCATTTTTTTTTCTTCCTCCGAAGTAACATAACTTAAATCAGCCTAAT TACTTACTTTCCAGAATTCTGTAAATGTTATGTGTGTGATTGTTTGAGAAGATAATGCACGATAGGATGTGTCTAATTTT GACTTGATTTATTACATGACCTTTTAATGTGTGAGAACTGAGAATTATGCGGATCGAACATACTAATGTAATCTGATTAA GTATTTTGTGAATATTTTTAGGTGATGAATGAGAACCCTGAGAAGCTCTACCCAACATTTTGGAACTGAAACACTGATTC CTCAAGGCAAGAATCTCAGTTAAGTAACTAAAGGAGAGCGACTTGTTGGTCCCAGTGCGTGGATTATGGCTGATTCTGTT GTTACATCTGACAAATCTTCCACTTCCTTGTTGAACCATGCTCGAATCATCTGTCATGTGTATGTTCATCTATAACTTAT TAGTTTTTTTGTATGTATTGGATTCTTACTTTACTCAGATCAAGATTCAATTTTTATTTTTCGCCATTTTTGCTTTTTAT CCATTGACTTAATTTTCTAAATTCTTCTTTAGGAAGATAAAGAAACATAATTCGCTGTTTTCTTTGAGCTGCTCATATAG GTGTAATTTATGAGGAATCATGAGCTGATATCTGCTCATGTTTATCACTAAGCTTTCAGAGGTTAACCTTGATAGTCGAG TCATGCAGCATGTCATGTCATGTACGCAGGTTTCTAAACAACCGTAGTTTTGGGTTTTGACTGTTAACTAAAAACTGCAC TATTCTTTACTTAGTTTAGTAGTTGAAAATAAAACTTCACTTTGAGTACTAGTTCAAAGGAGTTCTGGTTACTCTTGAGG TAATGTGTGGGATTTACTAAGAGATCGATAGTTAAATTCAAGTAAAAACTTTTAAAATGCAACAGTAATATTATCTTTAT CATTGAACATGTGTATGCAGAGAAGTTTCAATTTTCAGTTCCAGTTTATAACATGTATTAACTAAGACAAGAGTCACTCA AGTTTTGGATCATTCACTTGCTTTGTGTCATATGTCATGTCAGCCTTGGCAGTGGAAATTAATTTGAGATTTTTTCCCAA AGGCTTATTTTTTTAGCTAGAGTACTAATCAAACTACTATCCTTTTTGTCTTCTCATACAATGGCAGATGCCAGAAGCAG TTCTCCGAATACACATGTCCTCGATGCAATTCACGGTACTGTTCCCTCCAATGTTATAAAGTAAGTAAAGTTACATTTAA GTTGATTGGAATTGATTATACAAGTTTGATTAATGTATTACAAGGCTCTATTTGTGGCACAACCATTTCAAGACCCAAAA ATCAATAGTATATAGTATACTACACAGTATACACTATATATGTTTTGGAGAGAACATTTATTGAATGAGCAAGTGTTCTT AGACTAGTTTATGTATTTGGGAATTTCCTTTGTTAACATTTAAAAGTTAGAGGATTAATGATGTTATTTTGGGTTACAAT TGCATTTTGTTTTTCTCTTCTCCTTAGTCTGCTTCCATAGCTATGTTTTTGTTGAACATTATGATTTTATGAAATGGTTG TTGCTCACATGCCTTTTCATGGACACTCCGGATCTTGATTCTTGTTTGTTTATAAACTGCTGTGATTTTGATCATTCCTT TTTTGTAATTTTGACAGTCTCATAGTCTTCGTTGTACTGAATCCTTCATGAAAGAAAATGTAGTTCAGGAGCTTCATCAA ATGCAGCCTGATGAACAAGCCAAACACAAAATGTTGGACATACTGAAGAGATTTCATTCAGAAGAGGAAATGGATAGCAT GGAAGAGGATGGTAAGTTATCTATAGTTTGTCTTTGCATCCATATGTTTCAATGTTTTTTTTACTGCAGTCCTTTTTGTT TGATATTTATCTTTGCATGTTAAATTATCTAGTTTCTGTATTTTCTTTGAAGCATATTCTTGACTTATTGTAATAATGTC ATAGACAACTGCCACCTAGCTTTGTCCCAAGAGGTGGAGATGGCTATATTGCTCAACCAATGCCATTTAGTTCTATCAAA AACCATAATCAATTTGTTCCTAGAAAAATTATGCGCCAGTCTTATAATTATAGACTCCTAGAGAAAAAAAACCCTCCCAA GGAATCTCACATGTTATTGTCATTCACATTTGACTAAATCTTAAAAAAATTCACTGTTGCGTAATGGACATGGATAAACT GTGAAGGTGAATTGAAATAATTCCTCCATGTCCTTTGTTTATATATTCTGTTTAGTGGAAAAGTCTGTTTGCTTTGCTAT TTGGTATAGGACTACTAACTGTCTGTGTGGGTAAGTTATCTTTTTAGAAGATGGCAACTTATAGCTGCTTATTGATGAAC GAATCTCTTTGATTTTGCTATTTCATATAGGACTGCTAATAGTTTGTGTAAATGAGATAATTCTTAGAAGATGGGAACTC ATAGTCGCTGATTGATGTACAGTCAATGAAGCATGAAATTAATGGGGATTTTAAAATTACTGAAGCTCAGCATGGCTAGT CAAGTAGTCATTTAGTGCATGAAGTTGTATAATAAGTTGCCACGGTAGAAGTGCATCTTTTTTGGTAATTATTTTAGAAG AGTTGCTAAAGTTGTCATTTCCATCATGATCTGTCAACTGAAATTATCCAATTCTTTTCTTAGCTTCTGCAGATTCAAAT TTATCAGAGGAGACAATGGAGAAAATTTTATCCGGTATGTTCCTATTAAATGCTTATTCTTTTATTGCTAGCATATTCTA ACTGCACTGGCTCAGAATTGCCAGTAAAACAAGTTAATGTCTATCTCCAGTTGGGTAAAGACTGATTTGATTTTTATCTT CCTACAGGACAAGCAATCAGTTTTGATGATTTGTCACTTGAAGAGAAGAAACGTTTTTATAGAGCAATTGCTTGTGGGGA ATTGAGCAAGATGATCAAACCATGGGAACCATGGTGGACAACGCCTTCAGCCAGAAAAATCCGTCTTAGTCAGGAAGGAA CTCAACTCGTTCAACCGCTATCAGAGCAGGAATCGCAAGATGAAGTTGAAAGTGATGAATCCAGTGACATTCCTCCTGGC CCTGAAACCCCTCTCCCTCCTCTAAACAAGCTTAGCTCCAAGGAGCCATCACCACTTTTAACTGTTCACCTAGTTGATAT TCTATATAGCTACTGCTTCACTCTTCGCGTCTACAATGGAGATTGGAGGTCAGATCCCCTAGGGTCAGTTATGGTTGTGT TGAGTGTGTCCTCAGTGTTGGGTCGTTGCGACCAGCCCGAAACTGTGATGGAAGCCCTCTCTCATTGCTTGGAGCAGACA TGCTCTCCAGCTTACAGACACATGGGAGGGTTGCAATTTGGTTTGGGTCTTGTTGATGATGTGATTAGTCTTCTTGCATT GGGAAGTTCTGCTCTGGTGTGTGCCCTTTGCGATATGCGTCGGTTGGTTCAAGAAGGTGGAAAGGAGAACAAATCAGAAA GAAGGCCAAGAAGGTTGAGGAAGGATGAGATTAGAAGTGCTATTAAGATGGCAGAGAGAAAGATATATTTCATTATGTGT TGGGTTCATGAGCAGCCAGAGGAAGCTTGGTCTTCTTTGGCAGCCATTGTGGGAGCAGAAAAGGTATCAGCTGTGGAATT TCATGGGAGTAATAAGGCTGAAAGATTGTTGAACAATAAAGCAGAAACCAAAAGCAAATGTTTAATAGAGGAGATTTAAC TGCCCTGTTGACCCAATTTGTTTGCAAAGATGTTGTAAAATTATACCTCCTCCGTTCCTTATATATGTCACTTTAAGGTT TTGACACATGTATTAAAGAACAGTATTAATGTTATTGTTTCTGTAAAATTACTACTCCTATCTAACTTCTTAATACACCC TTTATTTATTTTTTATTAATTCTGACT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0058700.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGATTCTGTTGTTACATCTGACAAATCTTCCACTTCCTTGTTGAACCATGCTCGAATCATCTGTCATGTATGCCA GAAGCAGTTCTCCGAATACACATGTCCTCGATGCAATTCACGGTACTGTTCCCTCCAATGTTATAAATCTCATAGTCTTC GTTGTACTGAATCCTTCATGAAAGAAAATGTAGTTCAGGAGCTTCATCAAATGCAGCCTGATGAACAAGCCAAACACAAA ATGTTGGACATACTGAAGAGATTTCATTCAGAAGAGGAAATGGATAGCATGGAAGAGGATGCTTCTGCAGATTCAAATTT ATCAGAGGAGACAATGGAGAAAATTTTATCCGGACAAGCAATCAGTTTTGATGATTTGTCACTTGAAGAGAAGAAACGTT TTTATAGAGCAATTGCTTGTGGGGAATTGAGCAAGATGATCAAACCATGGGAACCATGGTGGACAACGCCTTCAGCCAGA AAAATCCGTCTTAGTCAGGAAGGAACTCAACTCGTTCAACCGCTATCAGAGCAGGAATCGCAAGATGAAGTTGAAAGTGA TGAATCCAGTGACATTCCTCCTGGCCCTGAAACCCCTCTCCCTCCTCTAAACAAGCTTAGCTCCAAGGAGCCATCACCAC TTTTAACTGTTCACCTAGTTGATATTCTATATAGCTACTGCTTCACTCTTCGCGTCTACAATGGAGATTGGAGGTCAGAT CCCCTAGGGTCAGTTATGGTTGTGTTGAGTGTGTCCTCAGTGTTGGGTCGTTGCGACCAGCCCGAAACTGTGATGGAAGC CCTCTCTCATTGCTTGGAGCAGACATGCTCTCCAGCTTACAGACACATGGGAGGGTTGCAATTTGGTTTGGGTCTTGTTG ATGATGTGATTAGTCTTCTTGCATTGGGAAGTTCTGCTCTGGTGTGTGCCCTTTGCGATATGCGTCGGTTGGTTCAAGAA GGTGGAAAGGAGAACAAATCAGAAAGAAGGCCAAGAAGGTTGAGGAAGGATGAGATTAGAAGTGCTATTAAGATGGCAGA GAGAAAGATATATTTCATTATGTGTTGGGTTCATGAGCAGCCAGAGGAAGCTTGGTCTTCTTTGGCAGCCATTGTGGGAG CAGAAAAGGTATCAGCTGTGGAATTTCATGGGAGTAATAAGGCTGAAAGATTGTTGAACAATAAAGCAGAAACCAAAAGC AAATGTTTAATAGAGGAGATTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0058700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADSVVTSDKSSTSLLNHARIICHVCQKQFSEYTCPRCNSRYCSLQCYKSHSLRCTESFMKENVVQELHQMQPDEQAKHK MLDILKRFHSEEEMDSMEEDASADSNLSEETMEKILSGQAISFDDLSLEEKKRFYRAIACGELSKMIKPWEPWWTTPSAR KIRLSQEGTQLVQPLSEQESQDEVESDESSDIPPGPETPLPPLNKLSSKEPSPLLTVHLVDILYSYCFTLRVYNGDWRSD PLGSVMVVLSVSSVLGRCDQPETVMEALSHCLEQTCSPAYRHMGGLQFGLGLVDDVISLLALGSSALVCALCDMRRLVQE GGKENKSERRPRRLRKDEIRSAIKMAERKIYFIMCWVHEQPEEAWSSLAAIVGAEKVSAVEFHGSNKAERLLNNKAETKS KCLIEEI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.60.190
7 65 59 2.5E-18 –
PANTHER
PTHR15555
11 379 369 1.3E-119
IPR039646
SUPERFAMILY
SSF144232
19 57 39 3.92E-10 –
Pfam
PF04438
20 49 30 9.8E-11
IPR007529
ProSiteProfiles
PS51083
23 55 33 10.59
IPR007529
MobiDBLite
mobidb-lite
168 207 40 - –
Pfam
PF04925
205 320 116 8.5E-8
IPR007009

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0058700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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