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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0073600 |
| Transcript ID | LotjaGi3g1v0073600.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribose-phosphate pyrophosphokinase; TAIR: AT2G44530.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|A0A072TKF0|A0A072TKF0_MEDTR Ribose-phosphate pyrophosphokinase; Found in the gene: LotjaGi3g1v0073600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8096998..8101525) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAAATATTGGTGAAAACATATCATCTGAAAATGAAATCCGAAAAATAAGCAAAACAGCATATTTTCCATTTCATTTT CATTTCTCTTTTTTTTATACAAAGAGGAAATAATGTTTTGGTCCTTATGGAAAGCATATTGTACTTTTTGAACATACTTT GATTGTTAAGTGTTGACTAATATCTGAAATCTTATATTATGCACCAAGTAGCCTTTAATTATTTACTGAAATGTCTGATT AACTTTTACTTAAATAGGAAATTGCATGCTACATGGGACTGGAGCTTGGAAAAATAAAGATAAAACGTTTTGCTGATGGT GAGATATACGTTCAGCTGCAAGAAAGTGTCAGAGGTTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCCAATGA AAATCTTATGGAGCTGCTAATAATGATCGATGCCTGCAGGAGAGCTTCAGCCAAAAATATTACAGCAGTCATTCCCTATT TTGGATATGCTAGAGCTGATAGAAAGGTCTGCTTGTCAGTTTGATTACATATTCATTATATTTTTGTTACTTGTGATTGT GATGACATTTTATGCTTCTTCAAATTCCACCATATTTTTCTTGTGTTACATGCGTATTGTGATTTTGCTACTATTTTGCA CATATGTGGCCCATATGGATACAATTATCTGCAAACCAGTGCCATTTTCCCCGAAAACATAGGATGCAGTTAAGATTGAG AAGATAGAACATATTACATAACAATATTTAAGAGAGATTTGAATATGTAAAACTTATTACATGCTACATAATCATCTGTG AAGCTATTTATCCCTTGAATATGACACATTGTCTTAATTATTGCATTTGGTAGCATCTGCACTGATAACCACCTCCCTTG GCATTATTTTCTTTGACTCTTTCTGTCAATCACGAACTCTCCCAAAAGCTTAACTTATTTGGTGAAGACTTATACATAAC ACTTTCCTTTGATAGTTGATGAGAAATTACGCAAAATATACACTTGTGACTGTATCTTCCAGAACCACAATAAGGGAAAA AGTTTACAAAATACATTCCAATGAGTATCAGTATGACAGTGTAAGACATACATGTAATAAGGATGTACAAGCAACTCTTG CTTTGGATATCTGCGTATCATAGTTTGGATATAAAGATGATGGATGATATTGAAGTCATTAACAACATAAATTTTTAGCC CTAAAAGTTGCTACCTAATGTTACTTGCACATTGCTACATAAAAGTTATTTCACAGCCAATGTTGATGATATTAACTGAA AATATCTGACATTCTAGTTTAGTTTAGATTAAATATGATCTGCAACTACTCTTGCAGACTCAAGGGCGTGAATCCATTGC TGCCAAGCTTGTAGCAAATTTGATTACTGAAGCAGGTGCAAATCGTGTTCTTGCTTGTGACCTCCATTCTGGGCAGTCCA TGGGCTACTTTGATATTCCAGTTGATCATGTGTATGGACAGGTAACGGAAAACAGTACTTGGGTGTGTCACTAGTGTAAA CTAGCGTGGAAAATTAAAAAGCATATGTGTTCTATTAAACATAAACAAACATGTGATATGTTATCTATTTGTAATAATTT ACTGCAAAAGAGTGTGTTGTTAGCATTTCTCGTAAATAAGTGTTGATCTTGATGCTATTTGATGATGATTGTGATTAGTG GTGGTAATGAGAATTGTCTGGCTTCTTCTGCAATATCATGTCTACAAGATATTCATTAAAGTCTAAACTTGGATGTCTCT TGAAAAGACGGATTTGTTAATTATACGGTTAACAAATTGATATTCTCAAAGGATTTTGGTAATCTGCCCCTATAGATATG ATGGGTGTGAGAGCATTTTCATAAATTTATTATTTTTGTAATCTCCATGGTCGAGATGTCTAGTCCTGGGTGTGAGGGGT GTGTTAGGGTCACGTTGACTAGAGATATGGCTGAAAAGTCTTTGTAAAGGTTACGACAATACAAGGTTTTGGACTTTTGG GGTAGAGTTAGGCCTAGCCTAAATTCTCTATATACGATAATATATGATTTAGCATTACAAATGGTACCTGCCATTTTCTG TAACAATATTTGAGATCTCCTAATGATTTATACAGTTTGCGTTGAATTATATTTTTATGAATTTTGCAGAAGTTCTTACA TTGAAACTGTCAGTGTAATTTGGTTCAGTGATTAATCATTTACTCTTTTTTTGTCACTACCAGCCTGTTATACTTGATTA CCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCACCAGATGTTGGTGGTGTTGCTAGAGCACGTGCTT TCGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGTCATGGGCATAATGTTGCTGAGGTATGATCT CTGCTCTTCTTAAGTTTGAGTTTAGATATCCTGATTTAGATTAGTTGCCAGCAGGGTTAGGGATGGTTCAACCTAATTTG ATTACCATAATGGTTCTGCAGTATAAAATGTATAATCCAAATTGGTAACAAGGATTGCTCATTGTTTATATGGAACTCTG ATTTGGGTGTTAAAACTAGTCTAGAAGGATAGCTCATTGTTTATATGGTTGGTCTGGTAACTCTGATTTGGGTGTTCAAA CTAGTCTAAACTACTAACAGGGATAGCCCATTGTTTATATGGTTGGTCAGGTAACTCTGATTTGGGAGTTAAAACTAGTC TATGACCACTGAGGGGTGACCATTGAGCACAGTTGTTCCCTTAATATAAAGCATTTTATATTTATAGTCATAAATGAAGC ACCTTTTGCTATCTGATTGGGTGAATCTCACATTTCAGGTGATGAATTTGATAGGTGATGTGAAGGGAAAGGTAGCAGTT ATGGTAGATGACATGATTGATACTGCTGGTGAGTTCATGTGTAAAACTCTTAATGTGCTAGTGCAATAATGGTAGTTTGT CTCTGACCCTATATTCAGTTAGATTAGTGCCTCAACCTCAAAACTCGCATGTTATGTCTCTCTCTCTCTCTCTCTCAATT GGTTTCAATTTTTTTTCTTGGTAAATAGTACAGCATTTCTGCTTAATCATACACGAAGTGATGATATATGGTGTAGAAAA ACTGGCAAACTGTATGATTATAGGTTAAAAAGGAATCTTTATTTACTTCAACAAAGAGACAGTTTTATGTTTAAGAAGTA AAGTTGTTGGTCTCTTTTGCTTGGTCTTCAATCACTTCTGATAAAAAAAAAATATACTTTACATACATATCTTTCTTATT GGTGCTATTTTTGAGTTCTTAACTCCTTAACTGTCAAAGTTACTTACAACAGAACAGTGTATAATATTTGATTTTTTGTT AATATGCAAATCTAAATTAATTAGGTCCTCATCCTCTGATAATTAGAACTTATGATAGAATTGGACCAGAAACTGAGAGG AAAGAAATGTCCTCTTATGGAAAAAGACTGAAAATGGGTATACAAGGTGCTGGCATTCAAGAGGCTAGTACTCTCCCACA ACTTAATTACTTTCCAGATAACGTCCCTAACAACTTCCTCATTCTTCTTATAGGAATGCTAACTAACAATTGTTTCAACA ACCTAACTAACAGTTAGAATGGCCTATTAATTCAGGCCCAAACTAACAACTAAGTGAAATAATCAAGTGATATTTAAAAG TCTATGCCCAAACTCTTGTACATGATGAGGAGGAGAAAATTAAGTGAAATAATCAAGTGATATTTAAAAGTAAATAATCA ATCTGTAAAATAATCTAACTCAATGCATGACATAACATTATGGCTAGACTGACGCATGACTAGACACCACCTAGTTGGAA AAAGGCTTGGTTGTTATTTTGTTTCTGTATTACTAGCTAAGTGGGGGAACATAGCACTTGAAAAAAAAATCAATGTCCTA ATTAATTGACTTTTTATAGGAACTATTAGCAAAGGTGCAGCTCTATTGCATCAAGAAGGTGCTAGAGAAGTCTATGCATG CACTACTCATGCTGTTTTCAGGTATACATTGGGCTTTAAATTCTGTAATAATTTATTTCAACTTTGGTTTGCACTGAGGC ACTTTAACCACGTCAATTATGGTGAATCTGCTACTGAAGCCAATTGCAATCAGATTTTTCTCTGTGAAGTTTTAATTCAG CTCTCTGTTCATTATTTTAGCATATTTAAGGGAAAAGAAATCAGTAGGCAGTAGGCACTAGTTCTTGCTGTATGAACTAT TGTTTTGAGAATGAACACATTTTCTTCCTACATTCTGATCCGGTTGCAATGATGGTTAATACATATTTGTCTTACTCATG ACTTGTGCATCATTCTTGCCTTTGCAGTCCTCCTGCTATAGAGAGGTTGTCAAGCGGTTTGTTTCAAGAAGTTATCATTA CAAATACAATTCCAGTGGCGGAACAGAACTATTTCCCCCAACTAACTGTCCTATCAGTGGCCAACCTTCTGGGAGAGACT ATATGGCGTGTTCATGATGACTGCTCAGTGAGTAGCATATTTCAGTAA
CDS sequence (LotjaGi3g1v0073600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCCGAAATTGCATGCTACATGGGACTGGAGCTTGGAAAAATAAAGATAAAACGTTTTGCTGATGGTGAGATATA CGTTCAGCTGCAAGAAAGTGTCAGAGGTTGTGATGTGTTTCTTGTGCAGCCCACATGTCCTCCTGCCAATGAAAATCTTA TGGAGCTGCTAATAATGATCGATGCCTGCAGGAGAGCTTCAGCCAAAAATATTACAGCAGTCATTCCCTATTTTGGATAT GCTAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCCAAGCTTGTAGCAAATTTGATTACTGAAGCAGGTGC AAATCGTGTTCTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTACTTTGATATTCCAGTTGATCATGTGTATGGAC AGCCTGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCACCAGATGTTGGTGGT GTTGCTAGAGCACGTGCTTTCGCCAAAAAATTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGTCATGGGCATAA TGTTGCTGAGGTGATGAATTTGATAGGTGATGTGAAGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTG GAACTATTAGCAAAGGTGCAGCTCTATTGCATCAAGAAGGTGCTAGAGAAGTCTATGCATGCACTACTCATGCTGTTTTC AGTCCTCCTGCTATAGAGAGGTTGTCAAGCGGTTTGTTTCAAGAAGTTATCATTACAAATACAATTCCAGTGGCGGAACA GAACTATTTCCCCCAACTAACTGTCCTATCAGTGGCCAACCTTCTGGGAGAGACTATATGGCGTGTTCATGATGACTGCT CAGTGAGTAGCATATTTCAGTAA
Protein sequence (LotjaGi3g1v0073600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSEIACYMGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGY ARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGG VARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTISKGAALLHQEGAREVYACTTHAVF SPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETIWRVHDDCSVSSIFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 300 | 300 | 44.838 | ||
| SMART | 1 | 106 | 106 | 5.5E-67 | – | |
| TIGRFAM | 2 | 300 | 299 | 9.3E-119 | ||
| Pfam | 3 | 106 | 104 | 6.6E-45 | ||
| Gene3D | 3 | 287 | 285 | 2.3E-118 | ||
| PANTHER | 3 | 299 | 297 | 4.9E-208 | – | |
| PANTHER | 3 | 299 | 297 | 4.9E-208 | ||
| SUPERFAMILY | 55 | 291 | 237 | 9.28E-62 | ||
| ProSitePatterns | 114 | 129 | 16 | - | ||
| Gene3D | 133 | 276 | 144 | 2.3E-118 | ||
| CDD | 149 | 261 | 113 | 7.94633E-24 | ||
| Pfam | 192 | 299 | 108 | 2.5E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Ribose phosphate diphosphokinase activity | Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | Ribonucleoside monophosphate biosynthetic process | The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. | ||
| Biological process | Nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). | ||
| Biological process | Cellular biosynthetic process | The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. |
Expression pattern of LotjaGi3g1v0073600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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