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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000836
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We have found 76 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.075s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062759.1
n.a. PREDICTED: uridine 5'-monophosphate synthase-like [Glycine max] gi|356548887|ref|XP_003542830.1| chr0 21146844 21151064 -
3 domain predictions
1 GO term
Lj0g3v0169929.1
n.a. PREDICTED: uracil phosphoribosyltransferase-like [Cicer arietinum] gi|502146848|ref|XP_004506634.1| chr0 81281146 81287155 +
2 domain predictions
1 GO term
Lj0g3v0169929.3
n.a. PREDICTED: uracil phosphoribosyltransferase-like [Cicer arietinum] gi|502146848|ref|XP_004506634.1| chr0 81282023 81287155 +
2 domain predictions
1 GO term
Lj0g3v0231859.1
n.a. hypoxanthine phosphoribosyltransferase [Arachis hypogaea] gi|194466195|gb|ACF74328.1| chr0 120290516 120291046 +
3 domain predictions
1 GO term
Lj0g3v0244049.1
n.a. Amidophosphoribosyltransferase [Medicago truncatula] gi|357473601|ref|XP_003607085.1| chr0 126647344 126649762 -
3 domain predictions
1 GO term
Lj0g3v0298579.1
n.a. PREDICTED: uridine kinase-like protein 4-like [Cicer arietinum] gi|502129034|ref|XP_004500159.1| chr0 155143159 155145632 +
2 domain predictions
1 GO term
Lj0g3v0327969.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr0 171440048 171440679 -
2 domain predictions
1 GO term
Lj0g3v0341109.1
n.a. PREDICTED: adenine phosphoribosyltransferase 2-like [Cicer arietinum] gi|502132410|ref|XP_004501346.1| chr0 178709291 178712937 -
3 domain predictions
1 GO term
Lj1g3v1720200.1
n.a. PREDICTED: adenine phosphoribosyltransferase 1, chloroplastic-like isoform X5 [Cicer arietinum] gi|502132789|ref|XP_004501529.1| chr1 20271203 20274484 +
3 domain predictions
1 GO term
Lj1g3v1720200.2
n.a. PREDICTED: adenine phosphoribosyltransferase 1, chloroplastic-like isoform X5 [Cicer arietinum] gi|502132789|ref|XP_004501529.1| chr1 20271203 20274484 +
3 domain predictions
1 GO term
Lj1g3v3834320.1
n.a. PREDICTED: uridine kinase-like protein 1, chloroplastic-like [Glycine max] gi|356558725|ref|XP_003547653.1| chr1 43699832 43706563 -
2 domain predictions
1 GO term
Lj1g3v3834320.2
n.a. PREDICTED: uridine kinase-like protein 1, chloroplastic-like [Glycine max] gi|356558725|ref|XP_003547653.1| chr1 43699832 43706563 -
2 domain predictions
1 GO term
Lj2g3v1415430.1
n.a. PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial-like [Glycine max] gi|356497736|ref|XP_003517715.1| chr2 22452976 22457710 -
3 domain predictions
1 GO term
Lj2g3v2002270.1
n.a. PREDICTED: adenine phosphoribosyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502160202|ref|XP_004511667.1| chr2 30227983 30232795 -
3 domain predictions
1 GO term
Lj2g3v3319240.1
n.a. PREDICTED: uridine kinase-like protein 4-like [Glycine max] gi|356552443|ref|XP_003544577.1| chr2 42042180 42052839 +
2 domain predictions
1 GO term
Lj2g3v3319240.2
n.a. PREDICTED: uridine kinase-like protein 4-like [Glycine max] gi|356552443|ref|XP_003544577.1| chr2 42042180 42054671 +
2 domain predictions
1 GO term
Lj2g3v3319240.3
n.a. PREDICTED: uridine kinase-like protein 4-like [Glycine max] gi|356552443|ref|XP_003544577.1| chr2 42042180 42052839 +
2 domain predictions
1 GO term
Lj3g3v0619310.1
n.a. PREDICTED: ribose-phosphate pyrophosphokinase 5, chloroplastic-like [Glycine max] gi|356504490|ref|XP_003521029.1| chr3 6839932 6844014 -
2 domain predictions
1 GO term
Lj3g3v2317920.1
n.a. PREDICTED: ribose-phosphate pyrophosphokinase 5, chloroplastic-like [Glycine max] gi|356504490|ref|XP_003521029.1| chr3 28606007 28612229 +
2 domain predictions
1 GO term
Lj3g3v2317920.2
n.a. RecName: Full=Ribose-phosphate pyrophosphokinase 1; AltName: Full=Phosphoribosyl pyrophosphate synthase 1gi|4902849|emb|CAB43599.1| phosphoribosyl pyrophosphate synthase [Spinacia oleracea] gi|62286954|sp|Q9XG98.1|KPRS1_SPIOL chr3 28607518 28612229 +
2 domain predictions
1 GO term
Lj4g3v0210320.1
n.a. PREDICTED: histidine kinase 3-like [Glycine max] gi|356512385|ref|XP_003524900.1| chr4 2650313 2652097 -
2 domain predictions
1 GO term
Lj4g3v1151870.1
n.a. Ribose-phosphate pyrophosphokinase [Medicago truncatula] gi|357476731|ref|XP_003608651.1| chr4 17196851 17200402 +
2 domain predictions
1 GO term
Lj4g3v1388350.2
n.a. PREDICTED: uridine kinase-like protein 2, chloroplastic-like [Cicer arietinum] gi|502176210|ref|XP_004515823.1| chr4 21339075 21344031 -
2 domain predictions
1 GO term
Lj4g3v1388350.3
n.a. PREDICTED: uridine kinase-like protein 2, chloroplastic-like [Cicer arietinum] gi|502176210|ref|XP_004515823.1| chr4 21339075 21344031 -
2 domain predictions
1 GO term
Lj5g3v0412360.1
n.a. PREDICTED: uridine kinase-like protein 4-like [Glycine max] gi|356527242|ref|XP_003532221.1| chr5 4137361 4143326 +
2 domain predictions
1 GO term
Lj5g3v0412360.2
n.a. PREDICTED: uridine kinase-like protein 4-like [Glycine max] gi|356527242|ref|XP_003532221.1| chr5 4137361 4143783 +
2 domain predictions
1 GO term
Lj6g3v0920980.1
n.a. Ribose-phosphate pyrophosphokinase [Medicago truncatula] gi|357491519|ref|XP_003616047.1| chr6 9520090 9523394 +
3 domain predictions
1 GO term
LotjaGi1g1v0013000.2
n.a. Uridine kinase; TAIR: AT4G26510.1 uridine kinase-like 4; Swiss-Prot: sp|O65583|UKL4_ARATH Uridine kinase-like protein 4; TrEMBL-Plants: tr|A0A0B2QUU5|A0A0B2QUU5_GLYSO Fructose-bisphosphate aldolase; Found in the gene: LotjaGi1g1v0013000 LjG1.1_chr1 1661643 1666511 -
2 domain predictions
1 GO term
LotjaGi1g1v0013000.3
n.a. Uridine kinase; TAIR: AT4G26510.1 uridine kinase-like 4; Swiss-Prot: sp|O65583|UKL4_ARATH Uridine kinase-like protein 4; TrEMBL-Plants: tr|A0A0B2QUU5|A0A0B2QUU5_GLYSO Fructose-bisphosphate aldolase; Found in the gene: LotjaGi1g1v0013000 LjG1.1_chr1 1661643 1667145 -
2 domain predictions
1 GO term
LotjaGi1g1v0360900.1
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT1G27450.1 adenine phosphoribosyl transferase 1; Swiss-Prot: sp|P31166|APT1_ARATH Adenine phosphoribosyltransferase 1, chloroplastic; TrEMBL-Plants: tr|A0A075EAV1|A0A075EAV1_ASTME Adenine phosphoribosyl transferase; Found in the gene: LotjaGi1g1v0360900 LjG1.1_chr1 83580747 83584598 +
3 domain predictions
1 GO term
LotjaGi1g1v0360900.2
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT1G27450.1 adenine phosphoribosyl transferase 1; Swiss-Prot: sp|P31166|APT1_ARATH Adenine phosphoribosyltransferase 1, chloroplastic; TrEMBL-Plants: tr|A0A075EAV1|A0A075EAV1_ASTME Adenine phosphoribosyl transferase; Found in the gene: LotjaGi1g1v0360900 LjG1.1_chr1 83580747 83584598 +
3 domain predictions
1 GO term
LotjaGi1g1v0360900.3
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT1G27450.1 adenine phosphoribosyl transferase 1; Swiss-Prot: sp|P31166|APT1_ARATH Adenine phosphoribosyltransferase 1, chloroplastic; TrEMBL-Plants: tr|I3SH66|I3SH66_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0360900 LjG1.1_chr1 83580812 83584469 +
3 domain predictions
1 GO term
LotjaGi1g1v0382400.1
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT5G11160.1 adenine phosphoribosyltransferase 5; Swiss-Prot: sp|Q9LFP0|APT5_ARATH Adenine phosphoribosyltransferase 5; TrEMBL-Plants: tr|I3S3L6|I3S3L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0382400 LjG1.1_chr1 86580359 86584166 -
3 domain predictions
1 GO term
LotjaGi1g1v0382400.2
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT5G11160.1 adenine phosphoribosyltransferase 5; Swiss-Prot: sp|Q9LFP0|APT5_ARATH Adenine phosphoribosyltransferase 5; TrEMBL-Plants: tr|I3S3L6|I3S3L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0382400 LjG1.1_chr1 86581219 86583895 -
3 domain predictions
1 GO term
LotjaGi1g1v0382400.3
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT5G11160.1 adenine phosphoribosyltransferase 5; Swiss-Prot: sp|Q9LFP0|APT5_ARATH Adenine phosphoribosyltransferase 5; TrEMBL-Plants: tr|I3S3L6|I3S3L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0382400 LjG1.1_chr1 86582194 86583895 -
3 domain predictions
1 GO term
LotjaGi1g1v0562400.1
n.a. Amidophosphoribosyltransferase; TAIR: AT2G16570.1 GLN phosphoribosyl pyrophosphate amidotransferase 1; Swiss-Prot: sp|P52418|PUR1_SOYBN Amidophosphoribosyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0L9V6R9|A0A0L9V6R9_PHAAN Amidophosphoribosyltransferase; Found in the gene: LotjaGi1g1v0562400 LjG1.1_chr1 109447034 109449850 +
3 domain predictions
1 GO term
LotjaGi1g1v0562400.2
n.a. Amidophosphoribosyltransferase; TAIR: AT2G16570.1 GLN phosphoribosyl pyrophosphate amidotransferase 1; Swiss-Prot: sp|P52418|PUR1_SOYBN Amidophosphoribosyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0L9V6R9|A0A0L9V6R9_PHAAN Amidophosphoribosyltransferase; Found in the gene: LotjaGi1g1v0562400 LjG1.1_chr1 109447181 109449265 +
3 domain predictions
1 GO term
LotjaGi1g1v0622900.1
n.a. Uridine kinase; TAIR: AT5G40870.1 uridine kinase/uracil phosphoribosyltransferase 1; Swiss-Prot: sp|Q9FKS0|UKL1_ARATH Uridine kinase-like protein 1, chloroplastic; TrEMBL-Plants: tr|I1MLJ3|I1MLJ3_SOYBN Uridine kinase; Found in the gene: LotjaGi1g1v0622900 LjG1.1_chr1 117006876 117012928 -
2 domain predictions
1 GO term
LotjaGi1g1v0622900.2
n.a. Uridine kinase; TAIR: AT5G40870.1 uridine kinase/uracil phosphoribosyltransferase 1; Swiss-Prot: sp|Q9FKS0|UKL1_ARATH Uridine kinase-like protein 1, chloroplastic; TrEMBL-Plants: tr|A0A0S3RWI8|A0A0S3RWI8_PHAAN Uridine kinase; Found in the gene: LotjaGi1g1v0622900 LjG1.1_chr1 117007433 117012669 -
2 domain predictions
1 GO term
LotjaGi2g1v0075500.1
n.a. Uridine kinase; TAIR: AT3G27440.1 uridine kinase-like 5; Swiss-Prot: sp|Q9LTY6|UKL5_ARATH Uridine kinase-like protein 5; TrEMBL-Plants: tr|A0A1J7HJ27|A0A1J7HJ27_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0075500 LjG1.1_chr2 19759037 19770794 -
2 domain predictions
1 GO term
LotjaGi2g1v0075500.2
n.a. uridine kinase/uracil phosphoribosyltransferase 1; TAIR: AT3G27440.1 uridine kinase-like 5; Swiss-Prot: sp|Q9LTY6|UKL5_ARATH Uridine kinase-like protein 5; TrEMBL-Plants: tr|A0A1J7HJ27|A0A1J7HJ27_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0075500 LjG1.1_chr2 19759442 19763992 -
2 domain predictions
1 GO term
LotjaGi2g1v0324200.1
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT1G10700.1 phosphoribosyl pyrophosphate (PRPP) synthase 3; Swiss-Prot: sp|Q9XGA0|KPRS3_SPIOL Ribose-phosphate pyrophosphokinase 3, mitochondrial; TrEMBL-Plants: tr|I1JC62|I1JC62_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0324200 LjG1.1_chr2 79914554 79921272 -
3 domain predictions
1 GO term
LotjaGi2g1v0425300.1
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|V7CJ62|V7CJ62_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92304021 92309475 -
3 domain predictions
1 GO term
LotjaGi2g1v0425300.2
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|A0A0S3T6I9|A0A0S3T6I9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305211 92309228 -
3 domain predictions
1 GO term
LotjaGi2g1v0425300.3
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|A0A0S3T6I9|A0A0S3T6I9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305211 92309228 -
3 domain predictions
1 GO term
LotjaGi2g1v0425300.4
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|K7KN25|K7KN25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305352 92309228 -
3 domain predictions
1 GO term
LotjaGi2g1v0425300.5
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|A0A0S3T6I9|A0A0S3T6I9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305352 92309228 -
3 domain predictions
1 GO term
LotjaGi2g1v0425300.6
n.a. Adenine phosphoribosyltransferase-like protein; TAIR: AT4G22570.1 adenine phosphoribosyl transferase 3; Swiss-Prot: sp|Q9SUW2|APT3_ARATH Adenine phosphoribosyltransferase 3; TrEMBL-Plants: tr|A0A0S3T6I9|A0A0S3T6I9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0425300 LjG1.1_chr2 92305809 92309228 -
3 domain predictions
1 GO term
LotjaGi3g1v0073600.1
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G44530.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|I1JMH4|I1JMH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0073600 LjG1.1_chr3 8096210 8103926 -
2 domain predictions
1 GO term
LotjaGi3g1v0073600.2
n.a. Ribose-phosphate pyrophosphokinase; TAIR: AT2G44530.1 Phosphoribosyltransferase family protein; Swiss-Prot: sp|O64888|KPRS5_ARATH Ribose-phosphate pyrophosphokinase 5, chloroplastic; TrEMBL-Plants: tr|I1JMH3|I1JMH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0073600 LjG1.1_chr3 8096210 8103926 -
2 domain predictions
1 GO term