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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0076600 |
| Transcript ID | LotjaGi3g1v0076600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G54200.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44; TrEMBL-Plants: tr|A0A072VAE7|A0A072VAE7_MEDTR Transducin/WD-like repeat-protein; Found in the gene: LotjaGi3g1v0076600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8383939..8389156) extracted from Lotus japonicus Gifu genome v1.2.
CTATTCCCGACCACCGCCGTGAACCATGAGCAGAGCCACCGTTGGGGACGACGGCGAAGAAGAAACTGAGTGCTTCTACG AATCCCACGACCGCTTGCTCTCTCTTTCTTCCTCTTGCTCTTGCTCCAACTCCAACTCTGATAACGAAGAACAAGATAAC ACCACCACCGCCACCGCCACCGCCACCAATTGTAATTACAATTTCGCCCTCAACAGTTACGACGTATGGATCTCTCAACC CTCCTCCGTCGAAGAACGCCGCTCCCGCCTCCTCCAAAACATGGGCCTCTCCTCCGACCCTTCCCTCTCCCGCCGCTCCA ACCTCAATTCCATCTTCCGATCCAAATCCGACGGTGGCGCCACCGCCAACAATATCAACAACCTGTCTTCTTCTTCTTCT TCTTCTTCTTCTTTTCATTCTGCTACCTCATCCTCCTCTGTGAATAATGGTATCAGGGGGAACGGCGGCGGCGGTGGTGG TGGCTCCCCGGGGAAGCCGCCGTCCGGGAAGAATTGCCGGAGGAGTCGGTCGTCGTCGGATTCTGGTGATGCGGCGGAGA AAGGGTGGGAGCGGGCTTGTACGATAAGAGATCTTGACAACGGGAAGGAGTTTGTGGTGAAGGAGGTGACGGAGGATGGG GTGTTGGATGAGGTGAAGGAGGTTGGGACTGGGAGGCAGCTTACTATGGAGGAGTTTGAGATGACGGTGGGGCACTCGCC GATCGTGCAGGAGTTGATGCGGCGGCAGAATGTGGAGGAGAATAAGGACGGTGTTGATTCCGGTGGAGGGAGTTCTAATG GTGGTGGAAGTGGTAGTGGTCATGGTCATGGTAATGGTGGCGGTCATGGTAATGGGAGTAAGGTGAAGAAGAAAGGAGGG GGTTGGTTGAAGAGTATTAAGAGCGTTGCGAGCTCGATGGCGGGGCATAAGGAGAGGAGGAGCAGCGATGAGAGGGATAC GTCGTCGGAGAAAGGCGGGAGGAGGTCGAGCTCCGCCACGGATGACAGCCAGGATGGTACATTTCATGGACCGGAGAGGT TGAGGGTGAGGCAGTATGGGAAATCATGTAAGGAGGTAACTGCATTGTACAAGAGCCAAGAGATTCAGGCTCACACTGGA TCCATTTGGAGCATCAAGTTCAGTTTGGATGGGAAGTACCTTGCTAGTGCTGGTGAGGATTGTGTGATCCATGTTTGGCA GGTTGTGGAATCTGAGAGGAAAGGGGAGCTGCTGCTCATGGAGAAACCGGAGGATGTGAGTGTCAATATGCTGTTTCTTG TCAACGGGTCGCCGGAGCCGGCTGCGGCCCTGCTGTCTCCTGGGTTGGACATCAACCCTGAGAGGAAGAGGAAGGGGAGG TCATCAGTTAGTAGAAAGTCAATGAGCTTGGACCAGTTGGTTGTTCCGGAGAACGTGTTTGGACTCACTGAAAAACCCAT TTGCTCCTTTCAGGGCCATCTCCATGATGTGCTTGATCTGTCTTGGTCCAAGTCTCAGGTTAGATTCTCTCTTTTAAATG GGTCTTCTTGTGCTGTTATTCCGTCCGGTGTGATCAATCCCTGGTATATTTATAAAGTTGGCACCAGCTGATCTTATGTT GGATATAAGTTGTTGTTACGGGTAGTTCCTACTAAATGATGGATGAATGTGGTTTTACTGAGCAGTTTGAGTAAGTTTTT CTACTTTGTTTCTATAGCAACTAATGCAATATTCATGATATAATTGGTTGGAACGAGATAGTTTTCGGGTGGCTGAATAG GCACAAAGAAAAAACATTGGTTTCGAATTGCAGTAAAATATATTTCGTGTTAAGAATATCCATTTCTCATTTGTAGTCTA CGCTACGACTAATGTTATTTCAGGGTGATGCTGGGAGCCTGGGACTATTTTGTTTATTGTTTTCTGGTTATTATGTTGTG GAAAATATTTATGCAAAGTGGACAAGCTACTAGGCTGTTGCTGGTTTTGGTTACTTTAAGGTTGAGTTATTGTAGTCTTA AAATGTGTTATAGGAACTAGTAAAAAAAATCTGTTTGAGTGTGAAGGTTTCTGGATCTTTTCTTTTTTCCTACTCCCTGT CTGATCCAAATTTGTGTTTATGAATTTTTTGTGATAGGCCTAAAATTGTTTATTTTTCCTACAGAGTTAATTTGTTATTC TAGGCCTTCCTTCCTTCTTGGAAGGAAGACATTAAAAAAATGATGAGTTTAAGGAGTTAACATACAGACAACAGGATGGC AGTATGTTTTAAGATTTATGGTTATATCCAATTTATGGTTAAATACTCTATGGTTATTTCCAATTTTTCCAGCAATTACT ATAGTGAACGTTGATAAAGAGATAGTTTTGCTGGGCTCTAAGGAAAAGGGAACTAAAGTTTACTACTTGAAAGGCAGACA TAATGTTTTCAGGTCTGTAACTTATTAGGAGTTAGGATGCTTGTTTTTAGTTTTTACTTAGGAGTTAGGAGCACTAATTA GATGACTTGTTGATGTCTTTATGATGAAAGGTTGAGAGATTATCTTGTTATCAGCTTACTTTCAGGTCAATTTATCATTA TTCCCTATGTAAATTTTAGCAGTGCTTGCTAAACCTGAAAAAATAGATAGTTTTTGAACTGATTTTTTAGTTTACTAAAC TTTCCCTATTGTCTGCATAGGAGTAGAAGCATGCCTAAGCATATTTTAACATCTCTACTATATACATTCCTTATAAATAG GGCAACGCTGGTGGGCTTTATTGAGCACGCTTCAGAGTGACTAAATATGAAGAATGAATTGTCATTATCCATATTTTTGC AAGCTCAGATCACTTTGAAAAGCTTTGGGAGGGTTTTTTTTTTTCTTTCTGAGGGGAGGGGGGCCTTTTTATTCATCCAA AATTTTATTGATTAATGTCTTTGCGTGATATTTAAAACTATGTGATTAAAGCAGTGCATGTGTTTTTATTTTGAAGCATC CTTTGTAATATTTTTAGTCCCTTTTTTGTACAGCACTTGCTTTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTT GTCTAGCAAGACTTGTTTGAAAATATTTTCACACAGTGACTATGGTGAGTAAATGCAACTATAACATCTTTGCTCTCTCT TAATCTCGTAGCATGTTTGGATCAACTTCTATTTTATCATAACCAATTCTAGCACACTCCTATCAACAACAACAAAAAAA TCAATTCTAGCACACACAAGCTTCTCCCTAGAATTGATTTTGGCTTTAGAATCAATTGTAGAAAGATTTCTAAACATGCA CTAAATCATATATAGGCCACTGCTTTGGACACAAAATATTCTTTTGTTAAATATGACTAAATGGCAGAGCACCCATTCTT TTATGTTATTAAAATTTATTTATTCTGCCTCTTCCCAACTAAAAATTGAATCAGATTCCATATCAATCATGTTCCTCCAA TCTAGCCCATCTTTGAGGATGGGCATTATGGAACGCAGGAACCGTTTTATGAAAATACTTGTCTTTGCTGCACATAGGAA TAATTATACAAGACTTTTTTTATATCCAATAGGATGGTTAACTTTAGAATGAAGTCCCTTTTAGTTCTTTGCTAATTATA CCCTTTGCTTCAATCTACTTTTTTTCTGGCACAGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGCTACTTCATTAG TGGATCTTTAGATGCTAAGGTTCGCATTTGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTGCATGAGATGG TCACTGCTGCTTGTTATACACCTGATGGTCAGGTTGGTACAAGATTAATGTGCTTTGAATTCAACACTTGAAGTTCGATT TTTAAGTGTAAACTCAGTTAAATTTGCGATGCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGCCACTTATATGATA CGTCCGGTACTGTTCTAGTCTTTTTCCCCTAATAACTGTGTTTATCCATCTACAATCCATTCTGATGATTGTGGGGTCAC TGATTATCATAATGTTTTTATATTTTGTTCAGAAAATAAATTGCAACTGAAAAGCCAGATCAATCTGCAGAACAAGAAGA AGAAATCCCATCACAAAAAAATTACCGGTTTCCAGGTAATATAAGGATTTACTCCAGTTCTATTTTATATTTATGTGTGC CCATCTAAAAGGAGGGTATTTGACCAATTGACCATAAATGATTTGCTTTGACTAAGTCACAATGCTTATGCTTGTCTTCC TTATTGAATTTTATGAACAGTTTGCCCCAGGAAGTTCGTCAGAAGTACTTATCACATCTGCTGATTCACGAATTCGGGTT GTTGATGGTGTTGATCTGGTTCACAAGTTTAAAGGTATGTAATACTAATTATATATCAAGTAATTTAGTTAAAAGATAAT ATAGCAAGTTTATTTGGTCAAAGCAATCCTCACTACTTTTTTCCATGTTTTATCGGAGTGTGGGGAGTGTTCTCCTAATG CTGAAAAAAAGATATATTGTAAATTTATGTGGACGAATAAAAATAAAGATGTGGTCTTGTTAGCTCTGCAACTTTGCTCA AATGGAAACAGGTTTCAGTATATTTTCTTGCTGATGAAACTGATGCAAATTTTGTGCAGGCTTTCGAAATGCAACTAGCC AGATTTCAGCCTCCCTCACAGCTAATGGTAAATACATCGTCGCAGCGAGTGAGGATTCCCATGTATACATCTGGAAAAAT GAAGCTGATTGCAGGCCTAACAGGAGTAAAGGCGTCACTGTCACAAGCTCATACGAACATTTTCACTGTAAAGATGTGTC GGTGGCCATTCCCTGGCCTGGAATGGGTGATGCATGGGACATGCATGATACATTCTCAGCAGAACAGCCTGAGCTCGATA GCAATGCTGACGAAGTTGTATCAACCAATCATCCTCCTACCCCTGTAGAGGAAAACTTCGGTACCGAGGGTTCACGATCT GCTTCAGGTTACCATAATAGTCCACGCCACGCAACCATCGCAAGCGCGACGAACAGTTACTTTTTCGATAGAATTTCTGC AACATGGCCTGAAGAAAAACTTGTTCTAGCTGCGAGAAATCGAAGCCCTCGTGTCAGCGTGGATTTCTCTAACGGGGTAA GTCAAAAAATGTCAGCGTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGCGAAATCAGAACTTTTCAGAATTTTGGA TTACCACTTCGAATATAA
CDS sequence (LotjaGi3g1v0076600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGAGCCACCGTTGGGGACGACGGCGAAGAAGAAACTGAGTGCTTCTACGAATCCCACGACCGCTTGCTCTCTCT TTCTTCCTCTTGCTCTTGCTCCAACTCCAACTCTGATAACGAAGAACAAGATAACACCACCACCGCCACCGCCACCGCCA CCAATTGTAATTACAATTTCGCCCTCAACAGTTACGACGTATGGATCTCTCAACCCTCCTCCGTCGAAGAACGCCGCTCC CGCCTCCTCCAAAACATGGGCCTCTCCTCCGACCCTTCCCTCTCCCGCCGCTCCAACCTCAATTCCATCTTCCGATCCAA ATCCGACGGTGGCGCCACCGCCAACAATATCAACAACCTGTCGGATTCTGGTGATGCGGCGGAGAAAGGGTGGGAGCGGG CTTGTACGATAAGAGATCTTGACAACGGGAAGGAGTTTGTGGTGAAGGAGGTGACGGAGGATGGGGTGTTGGATGAGGTG AAGGAGGTTGGGACTGGGAGGCAGCTTACTATGGAGGAGTTTGAGATGACGGTGGGGCACTCGCCGATCGTGCAGGAGTT GATGCGGCGGCAGAATGTGGAGGAGAGTAATGGTGGCGGTCATGGTAATGGGAGTAAGGTGAAGAAGAAAGGAGGGGGTT GGTTGAAGAGTATTAAGAGCGTTGCGAGCTCGATGGCGGGGCATAAGGAGAGGAGGAGCAGCGATGAGAGGGATACGTCG TCGGAGAAAGGCGGGAGGAGGTCGAGCTCCGCCACGGATGACAGCCAGGATGGTACATTTCATGGACCGGAGAGGTTGAG GGTGAGGCAGTATGGGAAATCATGTAAGGAGGTAACTGCATTGTACAAGAGCCAAGAGATTCAGGCTCACACTGGATCCA TTTGGAGCATCAAGTTCAGTTTGGATGGGAAGTACCTTGCTAGTGCTGGTGAGGATTGTGTGATCCATGTTTGGCAGGTT GTGGAATCTGAGAGGAAAGGGGAGCTGCTGCTCATGGAGAAACCGGAGGATGTGAGTGTCAATATGCTGTTTCTTGTCAA CGGGTCGCCGGAGCCGGCTGCGGCCCTGCTGTCTCCTGGGTTGGACATCAACCCTGAGAGGAAGAGGAAGGGGAGGTCAT CAGTTAGTAGAAAGTCAATGAGCTTGGACCAGTTGGTTGTTCCGGAGAACGTGTTTGGACTCACTGAAAAACCCATTTGC TCCTTTCAGGGCCATCTCCATGATGTGCTTGATCTGTCTTGGTCCAAGTCTCAGCACTTGCTTTCATCTTCAATGGACAA AACAGTGCGGCTGTGGCATTTGTCTAGCAAGACTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGT TTAATCCTGTTGATGATAGCTACTTCATTAGTGGATCTTTAGATGCTAAGGTTCGCATTTGGAGCATTCCTGATCGACAA GTTGTTGATTGGATTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGTTC ATACAAGGGTAGCTGCCACTTATATGATACGTCCGAAAATAAATTGCAACTGAAAAGCCAGATCAATCTGCAGAACAAGA AGAAGAAATCCCATCACAAAAAAATTACCGGTTTCCAGTTTGCCCCAGGAAGTTCGTCAGAAGTACTTATCACATCTGCT GATTCACGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCACAAGTTTAAAGGCTTTCGAAATGCAACTAGCCAGATTTC AGCCTCCCTCACAGCTAATGGTAAATACATCGTCGCAGCGAGTGAGGATTCCCATGTATACATCTGGAAAAATGAAGCTG ATTGCAGGCCTAACAGGAGTAAAGGCGTCACTGTCACAAGCTCATACGAACATTTTCACTGTAAAGATGTGTCGGTGGCC ATTCCCTGGCCTGGAATGGGTGATGCATGGGACATGCATGATACATTCTCAGCAGAACAGCCTGAGCTCGATAGCAATGC TGACGAAGTTGTATCAACCAATCATCCTCCTACCCCTGTAGAGGAAAACTTCGGTACCGAGGGTTCACGATCTGCTTCAG GTTACCATAATAGTCCACGCCACGCAACCATCGCAAGCGCGACGAACAGTTACTTTTTCGATAGAATTTCTGCAACATGG CCTGAAGAAAAACTTGTTCTAGCTGCGAGAAATCGAAGCCCTCGTGTCAGCGTGGATTTCTCTAACGGGGTAAGTCAAAA AATGTCAGCGTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGCGAAATCAGAACTTTTCAGAATTTTGGATTACCAC TTCGAATATAA
Protein sequence (LotjaGi3g1v0076600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRATVGDDGEEETECFYESHDRLLSLSSSCSCSNSNSDNEEQDNTTTATATATNCNYNFALNSYDVWISQPSSVEERRS RLLQNMGLSSDPSLSRRSNLNSIFRSKSDGGATANNINNLSDSGDAAEKGWERACTIRDLDNGKEFVVKEVTEDGVLDEV KEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEESNGGGHGNGSKVKKKGGGWLKSIKSVASSMAGHKERRSSDERDTS SEKGGRRSSSATDDSQDGTFHGPERLRVRQYGKSCKEVTALYKSQEIQAHTGSIWSIKFSLDGKYLASAGEDCVIHVWQV VESERKGELLLMEKPEDVSVNMLFLVNGSPEPAAALLSPGLDINPERKRKGRSSVSRKSMSLDQLVVPENVFGLTEKPIC SFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDSYFISGSLDAKVRIWSIPDRQ VVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYDTSENKLQLKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSA DSRIRVVDGVDLVHKFKGFRNATSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKGVTVTSSYEHFHCKDVSVA IPWPGMGDAWDMHDTFSAEQPELDSNADEVVSTNHPPTPVEENFGTEGSRSASGYHNSPRHATIASATNSYFFDRISATW PEEKLVLAARNRSPRVSVDFSNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 108 | 101 | 0.0 | ||
| PANTHER | 8 | 108 | 101 | 0.0 | – | |
| MobiDBLite | 105 | 125 | 21 | - | – | |
| MobiDBLite | 105 | 123 | 19 | - | – | |
| PANTHER | 132 | 776 | 645 | 0.0 | ||
| PANTHER | 132 | 776 | 645 | 0.0 | – | |
| MobiDBLite | 222 | 266 | 45 | - | – | |
| MobiDBLite | 225 | 250 | 26 | - | – | |
| Gene3D | 243 | 339 | 97 | 3.9E-10 | ||
| SMART | 280 | 319 | 40 | 9.4E-8 | ||
| SUPERFAMILY | 282 | 612 | 331 | 5.13E-55 | ||
| Pfam | 286 | 318 | 33 | 4.4E-5 | ||
| ProSiteProfiles | 287 | 328 | 42 | 12.948 | ||
| ProSiteProfiles | 287 | 328 | 42 | 12.077 | ||
| PRINTS | 306 | 320 | 15 | 2.8E-5 | ||
| Gene3D | 376 | 636 | 261 | 3.1E-50 | ||
| SMART | 395 | 433 | 39 | 2.0E-8 | ||
| Pfam | 397 | 432 | 36 | 5.1E-6 | ||
| ProSiteProfiles | 402 | 442 | 41 | 12.614 | ||
| ProSiteProfiles | 402 | 619 | 218 | 16.717 | ||
| PRINTS | 420 | 434 | 15 | 2.8E-5 | ||
| SMART | 436 | 475 | 40 | 4.1E-9 | ||
| Pfam | 438 | 475 | 38 | 7.9E-4 | ||
| ProSiteProfiles | 442 | 476 | 35 | 12.58 | ||
| PRINTS | 462 | 476 | 15 | 2.8E-5 | ||
| SMART | 478 | 516 | 39 | 0.81 | ||
| SMART | 529 | 568 | 40 | 7.8 | ||
| SMART | 569 | 610 | 42 | 0.47 | ||
| Pfam | 573 | 610 | 38 | 0.16 | ||
| MobiDBLite | 668 | 697 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0076600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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